Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Andreas Tille
(forgot to change the subject to attract Git-Experts interest ...) On Thu, Nov 29, 2012 at 08:39:39AM +0100, Andreas Tille wrote: > Hi, > > there seems to be some problem with creating the source tarball from > libvistaio. > Any hint? > > On Thu, Nov 29, 2012 at 12:19:37AM +0100, Gert Wollny wr

Re: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-11-29 Thread Andreas Tille
Hi Erik, it seems I missed your ITP - otherwise I would have most probably pinged you whether you intent to do the packaging inside the Debian Med team. We try to inject medical and microbiological software into Debian and your ITP seems to fit perfectly into our biology task[1]. So I would sugg

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Gert Wollny
dh_clean gbp:info: Orig tarball 'libvistaio_1.2.14.orig.tar.xz' not found at '../tarballs/' fatal: Path 'libvistaio_1.2.14.orig.tar.xz.delta' does not exist in 'refs/heads/pristine-tar' pristine-tar: git show refs/heads/pristine-tar:libvistaio_1.2.14.orig.tar.xz.delta failed gbp:error: Coul

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Andreas Tille
On Thu, Nov 29, 2012 at 11:05:21AM +0100, Gert Wollny wrote: > dh_clean > gbp:info: Orig tarball 'libvistaio_1.2.14.orig.tar.xz' not found at > '../tarballs/' > fatal: Path 'libvistaio_1.2.14.orig.tar.xz.delta' does not exist in > 'refs/heads/pristine-tar' > pristine-t

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Andreas Tille
On Thu, Nov 29, 2012 at 11:23:13AM +0100, Andreas Tille wrote: > This is most probably the less time consuming solution. I admit I do > not really mind about the history of the initial packaging - so feel > free to commit the latest state of your work if this helps reducing the > effort. Having s

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Gert Wollny
Hello Andreas, On 11/29/12 11:23, Andreas Tille wrote: On Thu, Nov 29, 2012 at 11:05:21AM +0100, Gert Wollny wrote: This is most probably the less time consuming solution. I admit I do not really mind about the history of the initial packaging - so feel free to commit the latest state of your w

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Gert Wollny
On 11/29/12 13:14, Andreas Tille wrote: On Thu, Nov 29, 2012 at 11:23:13AM +0100, Andreas Tille wrote: This is most probably the less time consuming solution. I admit I do not really mind about the history of the initial packaging - so feel free to commit the latest state of your work if this h

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Andreas Tille
Hi Gert, On Thu, Nov 29, 2012 at 01:30:30PM +0100, Gert Wollny wrote: > Hello Andreas, > > On 11/29/12 11:23, Andreas Tille wrote: > >On Thu, Nov 29, 2012 at 11:05:21AM +0100, Gert Wollny wrote: > >This is most probably the less time consuming solution. I admit I do > >not really mind about the

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Andreas Tille
Hi Gert, On Thu, Nov 29, 2012 at 01:44:02PM +0100, Gert Wollny wrote: > > debcheckout git://git.debian.org/debian-med/libvistaio.git > --git-track '*' > declared git repository at git://git.debian.org/debian-med/libvistaio.git > git clone git://git.debian.org/debian-med/libvistaio.git libvistaio .

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Gert Wollny
Hello Andreas, On 11/29/12 13:46, Andreas Tille wrote: Fine. Regarding upstream tarball: I noticed that there is no debian/watch file. I have not checked how to download the upstream source but in any case having a watch file should something we should really gain for. Added and uploaded. us

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Gert Wollny
Hello Andreas, On 11/29/12 13:55, Andreas Tille wrote: The machine where I created the repro is a VM running the latest SID (updated yesterday) the other machine is some Ubuntu 12.04. Which means git-buildpackage version 0.6.0~got20121124 (sid) versus 0.5.32 (Ubuntu 12.04). Could this be the p

Re: Git help needed (Was: MIA - Software for medical image alaysis)

2012-11-29 Thread Andreas Tille
Hi Gert, On Thu, Nov 29, 2012 at 02:07:12PM +0100, Gert Wollny wrote: > On 11/29/12 13:46, Andreas Tille wrote: > >Fine. Regarding upstream tarball: I noticed that there is no > >debian/watch file. I have not checked how to download the upstream > >source but in any case having a watch file sho

Solved (Was: Git help needed (Was: MIA - Software for medical image alaysis))

2012-11-29 Thread Andreas Tille
Hi Gert, On Thu, Nov 29, 2012 at 02:57:09PM +0100, Gert Wollny wrote: > It is pristine-xz. The sid version (1.26) as a lot more lines > checking of the parameters in genxz than the Ubuntu 12.04 version > (1.20). Right! Using pristine-tar from unstable works now! > I did the dirty deed copying t

Re: Solved (Was: Git help needed (Was: MIA - Software for medical image alaysis))

2012-11-29 Thread Andreas Tille
Minor additional remark: While I'm a friend of separate doc packages in this case the size of the package is what I would consider "small" and thus I do not see any sense for a separate doc package just to carry the manpages. On the contrary - a good -dev package usually comes with manpages I wou

Re: Solved (Was: Git help needed (Was: MIA - Software for medical image alaysis))

2012-11-29 Thread Gert Wollny
Hello Andreas, On 11/29/12 16:11, Andreas Tille wrote: Minor additional remark: While I'm a friend of separate doc packages in this case the size of the package is what I would consider "small" and thus I do not see any sense for a separate doc package just to carry the manpages. On the contra

Re: Solved (Was: Git help needed (Was: MIA - Software for medical image alaysis))

2012-11-29 Thread Andreas Tille
On Thu, Nov 29, 2012 at 04:33:39PM +0100, Gert Wollny wrote: > Done. For the moment there is no other documentation, so I removed > the -doc package completely. Fine. > >>I: libvistaio-doc: spelling-error-in-manpage > >>usr/share/man/man3/VistaIOCombineBands.3.gz similiar similar > >>I: libvist

MIA - libmialm package upload

2012-11-29 Thread Gert Wollny
I've uploaded the libmialm package to git.debian.org/git/debian-med/libmialm.git Same as before, I checked normal building, building in pbuilder, and "lintian -I". The only error I get is the no-symbols-control-file. This version does not yet have much documentation. I'm working on the gtk-

Re: MIA - libmialm package upload

2012-11-29 Thread Andreas Tille
Hi Gert, thanks for your fast pace packaging effort! You might have noticed that I just uploaded libvistaio_1.2.14-1 after some last changes in debian/{copyright,rules} (git pull; git log). Congratulations to your first package. On Thu, Nov 29, 2012 at 05:17:16PM +0100, Gert Wollny wrote: > I'v

Re: MIA - libmialm package upload

2012-11-29 Thread Gert Wollny
Hello Andreas, I redid the repro, you can try now, if it doesn't work, leave it until I'm back. On 11/29/12 17:23, Andreas Tille wrote: thanks for your fast pace packaging effort! I actually enjoy doing it, but as I said before, expect a 12 day break from this moment on. You might have no