Re: Tophat 2.0.6 is ready for upload

2012-11-06 Thread Charles Plessy
Le Mon, Nov 05, 2012 at 10:03:40AM -0500, Carlos Borroto a écrit : > On Sun, Nov 4, 2012 at 8:36 PM, Charles Plessy wrote: > > > > I just realised that tophat never made it into Wheezy befor the freeze. > > Therefore, 2.0.6 is perfectly suitable for Sid. > > > > I lost track of who is DM or not.

New metapackages just uploaded

2012-11-06 Thread Andreas Tille
Hi, I just want to let you know that I created new metapackages and uploaded these to unstable. The rationale is that I do not expect any changes in the dependencies any more since we fixed all RC bugs affecting testing. Once the packages are accepted I'll file an unblock request to the release t

Re: Packaging Ray for Debian Med

2012-11-06 Thread Sébastien Boisvert
Hi Andreas, On 11/06/2012 02:18 AM, Andreas Tille wrote: Hi Sébastien, On Mon, Nov 05, 2012 at 06:59:27PM -0500, Sébastien Boisvert wrote: I want the ray-extra because ray contains the executable Ray whereas ray-extra has some R and python scripts which are not used in most Ray workflows. Thu

Re: Tophat 2.0.6 is ready for upload

2012-11-06 Thread Carlos Borroto
On Tue, Nov 6, 2012 at 3:57 AM, Charles Plessy wrote: > > Uploaded. > > Something I like to with my packages, is to commit the logs in the source > package's Git repository. But it would make quite a number of tags and > branches, so I wonder if you would like me to refrain to do so with tophat ?

Re: Packaging Ray for Debian Med

2012-11-06 Thread Andreas Tille
On Tue, Nov 06, 2012 at 09:17:59AM -0500, Sébastien Boisvert wrote: > >I guess now you need to fire up > > > > lintian -i ray_2.1.0-1_amd64.changes > > > > I don't get anything when I run this command. I am on Squeeze. For development I'd (strongly) suggest to do drop a file /etc/apt/prefe

Bug#692498: ITP: bamtools -- C++ API and toolkit for manipulating BAM (genome alignment) files

2012-11-06 Thread Michael Crusoe
X-Debbugs-Cc: debian-med@lists.debian.org X-Debbugs-Cc: debian-de...@lists.debian.org Package: wnpp Severity: wishlist Owner: debian-med@lists.debian.org * Package name: bamtools Version : 2.2 Upstream Author : Derek Barnett * URL : https://github.com/pezmaster31/bamto

Bug#692498: ITP: bamtools -- C++ API and toolkit for manipulating BAM (genome alignment) files

2012-11-06 Thread Michael Crusoe
And here's the package, https://github.com/mr-c/bamtools/tree/debian My packaging skills are a bit rusty, so your feedback would be appreciated. On Tue, Nov 6, 2012 at 1:28 PM, Michael Crusoe wrote: > X-Debbugs-Cc: debian-med@lists.debian.org > X-Debbugs-Cc: debian-de...@lists.debian.org > Pack

Re: Bug#692498: ITP: bamtools -- C++ API and toolkit for manipulating BAM (genome alignment) files

2012-11-06 Thread Michael Crusoe
And here's the package, https://github.com/mr-c/bamtools/tree/debian My packaging skills are a bit rusty, so your feedback would be appreciated. On Tue, Nov 6, 2012 at 1:28 PM, Michael Crusoe wrote: > X-Debbugs-Cc: debian-med@lists.debian.org > X-Debbugs-Cc: debian-de...@lists.debian.org > Pack