Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Alex Mestiashvili
On 05/25/2011 04:35 AM, Charles Plessy wrote: Dear Alex, As the Perl transition is over, I have updated libbam to serve its headers in /usr/include/samtools, and libbio-samtools-perl to search for them there. You can go ahead with a similar change in cufflinks any time you like. Have a nice da

Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Andreas Tille
Hi Alex, On Wed, May 25, 2011 at 04:33:37PM +0200, Alex Mestiashvili wrote: > Cufflinks in the git repository appears to be lintian clean . > The manual pages were missing , but each tool provides a help , so I > converted them with help2man and edited a bit for the better appearance . > > http:

Fwd: [fedora-medical] dcm4che-test package review

2011-05-25 Thread Sebastian Hilbert
FYI: Despite being RPM maybe it can be helpful when preparing Debian packages. Sebastian -- Weitergeleitete Nachricht -- Betreff: [fedora-medical] dcm4che-test package review Datum: Mittwoch, 25. Mai 2011, 18:23:48 Von: Ankur Sinha An: medical-...@lists.fedorahosted.org Hi

Re: Medical Icons.

2011-05-25 Thread Thomas Clark
Dear All, Wise words indeed. However, when younger I was amazed to learn that 'Seneca' was not a wise old Iroquois Indian Chief. The benefits of a secondary US Education. But time has convinced me that there are many 'Seneca' wise people. Cheers! to Hamzamu a real Doctor! to Regards! -Thomas

Re: [debian-med] Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Sebastian Hilbert
Am Dienstag, 24. Mai 2011, 08:59:59 schrieb Andreas Tille: > On Mon, May 23, 2011 at 08:48:04PM +0200, Sebastian Hilbert wrote: > > > Once alioth is back, please create a > > > debian-med/trunk/packages/gingko-cadx folder with it all. It is > > > definitely a most rewarding spare-time activity. The

Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Sebastian Hilbert
Am Dienstag, 24. Mai 2011, 10:07:53 schrieb Mathieu Malaterre: > On Tue, May 24, 2011 at 8:59 AM, Andreas Tille wrote: > >> I was under the impression that > >> Andreas and Mathieu have prepared everything and now it takes someone to > >> upload this. Did I miss something ? > > > > There is some

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Thorsten Alteholz
On Wed, 25 May 2011, Sebastian Hilbert wrote: Indeed an initial package is already there. I applied some patch, but lintian still complain about a rpath for mpi. Apparently rpath is needed to go pass a lintian error already... Could you please elaborate on what that means ? Is this something up

Re: [debian-med] Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Thorsten Alteholz
On Wed, 25 May 2011, Sebastian Hilbert wrote: I think the cmake issue has been taken care of after an hint from upstream. Yes, at least it compiled with only a small patch under sid. But this is a huge beast, it needed more than an hour to build on my small VM... Thorsten -- To UNSUBS

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Andreas Tille
Hi, On Wed, May 25, 2011 at 07:43:05PM +0200, Thorsten Alteholz wrote: > On Wed, 25 May 2011, Sebastian Hilbert wrote: >>> Indeed an initial package is already there. I applied some patch, but >>> lintian still complain about a rpath for mpi. Apparently rpath is >>> needed to go pass a lintian err

Re: [debian-med] Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Sebastian Hilbert
Am Mittwoch, 25. Mai 2011, 19:33:37 schrieb Thorsten Alteholz: > On Wed, 25 May 2011, Sebastian Hilbert wrote: > > I think the cmake issue has been taken care of after an hint from > > upstream. > > Yes, at least it compiled with only a small patch under sid. > But this is a huge beast, it needed

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Thorsten Alteholz
On Wed, 25 May 2011, Andreas Tille wrote: I'd say for a first shot on this package which might go to experimental this rpath issue might be ignorable. Are you sure that a package with such an error can be uploaded? Usually it is ugly to have upstream provided debian/ dirs and I always try to

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Andreas Tille
On Wed, May 25, 2011 at 10:18:40PM +0200, Thorsten Alteholz wrote: > On Wed, 25 May 2011, Andreas Tille wrote: >> I'd say for a first shot on this package which might go to experimental >> this rpath issue might be ignorable. > > Are you sure that a package with such an error can be uploaded? I ha

Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Charles Plessy
Le Wed, May 25, 2011 at 05:08:54PM +0200, Andreas Tille a écrit : > On Wed, May 25, 2011 at 04:33:37PM +0200, Alex Mestiashvili wrote: > > Cufflinks in the git repository appears to be lintian clean . > > The manual pages were missing , but each tool provides a help , so I > > converted them with

Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Alex Mestiashvili
On 05/26/2011 07:08 AM, Charles Plessy wrote: Le Wed, May 25, 2011 at 05:08:54PM +0200, Andreas Tille a écrit : On Wed, May 25, 2011 at 04:33:37PM +0200, Alex Mestiashvili wrote: Cufflinks in the git repository appears to be lintian clean . The manual pages were missing , but each too

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian6

2011-05-25 Thread Sebastian Hilbert
Am Mittwoch, 25. Mai 2011, 22:18:40 schrieb Thorsten Alteholz: > On Wed, 25 May 2011, Andreas Tille wrote: > > I'd say for a first shot on this package which might go to experimental > > this rpath issue might be ignorable. > > Are you sure that a package with such an error can be uploaded? > > >

Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Charles Plessy
Le Thu, May 26, 2011 at 08:08:20AM +0200, Alex Mestiashvili a écrit : > > Would it be possible just to roll back to latest commit done by you > , and start over from that point with my changes and the new > upstream 1.0.2 ? Yes, this is something that I was considering: recover your changes with