Just a hint on Blast+
This is a rewrite of Blast2 with performance improvements and supposed
eaiser to use.
But binaries and options were changed. There is a small fdscription we
made herte: http://drmotifs.genouest.org/2011/02/new-blast-web-form/
Le 2/2/11 10:08 PM, Andreas Tille a écrit :
Regarding biomaj, I have created a get-orig-source to download source
code and rearrange it to create the debian structure, to be used for
packaging.
We have an issue with our forge that is being fixed, so it cannot be
tested for the moment, but it should be ready in the next few days.
On our
Hi Olivier,
On Thu, Feb 03, 2011 at 09:29:19AM +0100, Olivier Sallou wrote:
> Just a hint on Blast+
>
> This is a rewrite of Blast2 with performance improvements and supposed
> eaiser to use.
> But binaries and options were changed. There is a small fdscription we
> made herte: http://drmotif
Some answers on BLAST+ and T-Coffee...
> > along with BLAST+
> > enables a key mode of operation in T-Coffee but currently the BLAST+ bit
> > only works with our bio-linux-blast+ package. I'm continuing to work on
> > this.
>
> Did you actually found out what BLAST+ is (I remember you were wonde
Hi,
the tm-align package would be ready for upload if somebody would care
for a manpage to TMscore. I have not found any good docs which would
enable me writing it. The help2man workaround results in a poor manpage
without a good usage guideline. Any volunteers?
Remark: I was told by Tim Booth
I can do this after the upload of rq on the weekend,
if noone else wants to be any quicker this means.
Best,
Steffen
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On 02/02/11 12:46, Andreas Tille wrote:
On Wed, Feb 02, 2011 at 11:53:17AM +, Tony Travis wrote:
A very significant outcome of the meeting is that Bio-Linux will make
much greater use of Debian-Med in future.
[...]
Hi, Andreas.
I've forwarded your email to the group: Please register if y
Hi,
> the tm-align package would be ready for upload if somebody would care
> for a manpage to TMscore. I have not found any good docs which would
> enable me writing it. The help2man workaround results in a poor manpage
> without a good usage guideline. Any volunteers?
My favoured way of doin
Hello ,
I almost finished packaging for vienna-rna (with great help of Andreas
Tille ).
linitian gives only 3 warnings :
$lintian vienna-rna_1.8.4-1_amd64.deb
W: vienna-rna: binary-without-manpage usr/bin/ct2b
W: vienna-rna: binary-without-manpage usr/bin/dpzoom
W: vienna-rna: binary-without-ma
> $lintian vienna-rna_1.8.4-1_amd64.deb
> W: vienna-rna: binary-without-manpage usr/bin/ct2b
> W: vienna-rna: binary-without-manpage usr/bin/dpzoom
> W: vienna-rna: binary-without-manpage usr/bin/popt
"popt" sounds like an awfully generic name for a binary.
Karsten
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On Thu, Feb 03, 2011 at 03:02:45PM +, Tim Booth wrote:
> My favoured way of doing small manpages is to mark them up in POD then
> using pod2man which produces a fairly satisfactory result.
>
> pod2man TMscore.pod | sed 's/"perl /.\\" "perl /' > TMscore.1
Good idea!
> Have pushed both the po
Begin forwarded message:
> From: Scott Christley
> Date: February 3, 2011 1:42:27 PM CST
> To: sub...@bugs.debian.org
> Subject: ITP: libswarm -- Swarm is a framework for agent-based simulation
>
> Package: wnpp
> Severity: wishlist
> Owner: Scott Christley
>
> Package name: libswarm
> V
Hi,
I would like to let you know about my attempt to finalise the packaging
of mrbayes which was residing in our SVN for a long time. I tried to
reasonable polish the packaging which was touched to some extend by all
people in CC - just tell me if you like to stay in the Uploaders field.
It is pe
Hi Alex!
On Thu, Feb 03, 2011 at 05:04:34PM +0100, Alex Mestiashvili wrote:
> I also have sent a message with patches to upstream maintainer .
Thanks for taking care of that!
> What else should be done to process this package ?
I just had a quick glance at the package and it seems that all of
t
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