Hi Andreas,
Andreas Tille, on 2020-12-06 17:07:14 +0100:
> Permissions granted (can not do much more out of a train with bad
> connectivity)
Thanks for the permission, especially in the poor networking
conditions. I received the acknowledgement of dak, and now
python-biopython is uploaded.
Hav
Permissions granted (can not do much more out of a train with bad connectivity)
On Sun, Dec 06, 2020 at 04:17:05PM +0100, Étienne Mollier wrote:
> Hi Steffen,
>
> Steffen Möller, on 2020-12-06 15:10:52 +0100:
> > The only thing I suggest to add (to help backporting) is to add a
> > version depend
Hi Steffen,
Steffen Möller, on 2020-12-06 15:10:52 +0100:
> The only thing I suggest to add (to help backporting) is to add a
> version dependency on dssp (> 4) to help backporting since the versions
> are diverse across our releases
> (https://packages.debian.org/search?keywords=dssp&searchon=nam
Heya,
The only thing I suggest to add (to help backporting) is to add a
version dependency on dssp (> 4) to help backporting since the versions
are diverse across our releases
(https://packages.debian.org/search?keywords=dssp&searchon=names&exact=1&suite=all§ion=all).
Best,
Steffen
On 06.12.20
Hi Steffen,
Steffen Möller, on 2020-10-17 19:54:17 +0200:
> uploaded - thank you for this, had given up on it once :)
You're welcome, thanks for the upload. :)
Cheers,
--
Étienne Mollier
Old rsa/3072: 5ab1 4edf 63bb ccff 8b54 2fa9 59da 56fe fff3 882d
New rsa/4096: 8f91 b227 c7d6 f2b1 948c 8
uploaded - thank you for this, had given up on it once :)
On 17.10.20 14:25, Étienne Mollier wrote:
> Hello,
>
> I prepared an update of python-biopython 1.78+dfsg-3, to address
> #972381 mainly, but it also includes pending removal of some
> makeblastdb overrides. The package is available on Sal
Étienne Mollier writes:
> Many, many thanks for your swift update.
No problem.
> I'm reverting most of
> my changes to python-biopython 1.78+dfsg-3 packaging to make
> sure no overrides risk interferring with your tuning during the
> build or autopkgtest, and bump the requirements to ncbi-blast
Hi Aaron,
Aaron M. Ucko, on 2020-10-05 08:57:43 -0400:
> u...@debian.org (Aaron M. Ucko) writes:
>
> > issue a give-back request for python-biopython on mipsel once a suitable
> > new BLAST+ build is available there.
>
> Update: The new BLAST+ build showed up overnight (from my time zone,
> anyw
u...@debian.org (Aaron M. Ucko) writes:
> issue a give-back request for python-biopython on mipsel once a suitable
> new BLAST+ build is available there.
Update: The new BLAST+ build showed up overnight (from my time zone,
anyway) as expected, and python-biopython's mipsel status changed from
"Fa
Étienne Mollier writes:
>
> https://buildd.debian.org/status/fetch.php?pkg=python-biopython&arch=mipsel&ver=1.78%2Bdfsg-2&stamp=1601713196&raw=0
Thanks for the report! I don't have access to any buildd servers, but I
was able to reproduce makeblastdb failures with current defaults on the
Hi Andreas,
Andreas Tille, on 2020-10-03 10:06:59 +0200:
> uploaded. Thanks a lot for caring for the migration of this
> important package
Thank you as well for the upload. Alas the build log still
looks like the run chokes on makeblastdb memory commit issues.
:(
==
Hi Étienne,
uploaded. Thanks a lot for caring for the migration of this
important package
Andreas.
On Sat, Oct 03, 2020 at 12:08:42AM +0200, Étienne Mollier wrote:
> Hi All,
>
> I think these changes to python-biopython stalled on my machine
> for long enough. The release 1.78+dfsg-2 re
Hi Andreas,
Andreas Tille, on 2020-09-14 13:51:18 +0200:
> Hi Étienne,
>
> thanks a lot for your work on this. My suggestions for changes are so
> unimportant that I do not want to rebuild just to fix these.
You're welcome, thank you for your insights and the upload!
> Please add some DEP3 des
Hi Étienne,
thanks a lot for your work on this. My suggestions for changes are so
unimportant that I do not want to rebuild just to fix these.
On Sun, Sep 13, 2020 at 07:17:03PM +0200, Étienne Mollier wrote:
> I have the following lintian warning, which I am not sure what
> to do with. I believ
Hi Étienne,
On Wed, Jun 17, 2020 at 09:20:37AM +0200, Étienne Mollier wrote:
> > I've just uploaded (today the build went smoothly).
>
> Thank you for the review and upload. :)
You are more than welcome. :-)
> > Thanks a lot for your investigation
>
> You're welcome. Next in my to do list i
Hi Andreas,
Andreas Tille, on 2020-06-17 08:05:57 +0200:
> On Tue, Jun 16, 2020 at 10:41:28PM +0200, Étienne Mollier wrote:
> > I pushed a little change in the d/control file of the package
> > python-biopython in version 1.77+dfsg-2. This was the suggested
> > way to address the bug #962944:
> >
Hi Étienne,
On Tue, Jun 16, 2020 at 10:41:28PM +0200, Étienne Mollier wrote:
> I pushed a little change in the d/control file of the package
> python-biopython in version 1.77+dfsg-2. This was the suggested
> way to address the bug #962944:
>
> https://bugs.debian.org/cgi-bin/bugreport.cgi
Howdy,
I pushed a little change in the d/control file of the package
python-biopython in version 1.77+dfsg-2. This was the suggested
way to address the bug #962944:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962944
I couldn't reproduce any particular problem with the few last
rou
Étienne Mollier, on 2020-06-16 18:51:52 +0200:
> I'm on it. I'm a bit unsure of the maximum possible, but having
> left my machine compute rosetta jobs for more than 80
> consecutive days, all I can say is that the limit is well over
> the million.
It is pid_max according to Linux documentation,
Hi Andrius,
mer...@debian.org, on 2020-06-16 19:46:00 +0300:
> Hi Étienne,
>
> On 2020-06-16 19:41, Étienne Mollier wrote:
> > As a side note, I remarked that t_coffee dislikes it when its
> > PID is greater than 26:
> >
> > $ t_coffee -version
> > PROGRAM: T-COFFEE Version_13.41.0.28
Hi Étienne,
On 2020-06-16 19:41, Étienne Mollier wrote:
> As a side note, I remarked that t_coffee dislikes it when its
> PID is greater than 26:
>
> $ t_coffee -version
> PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 -
> Revision 5d5a1c1 - Build 465)
>
>
Greetings,
mer...@debian.org, on 2020-06-15 14:48:07 +0300:
> On 2020-06-12 20:40, Steffen Möller wrote:
> > I found this
> >
> > Bio.PDB.mmtf docstring test ... skipped, missing Python dependency
> > Bio.PDB.mmtf.DefaultParser docstring test ... skipped, missing Python
> > dependency
> > Bio.PDB
On 2020-06-12 20:40, Steffen Möller wrote:
> I found this
>
> Bio.PDB.mmtf docstring test ... skipped, missing Python dependency
> Bio.PDB.mmtf.DefaultParser docstring test ... skipped, missing Python
> dependency
> Bio.PDB.mmtf.mmtfio docstring test ... skipped, missing Python dependency
>
> to s
On 2020-06-12 20:40, Steffen Möller wrote:
> to suggest packaging https://github.com/rcsb/mmtf-python - sigh. Any
> takers? Would be quite a fit for next week's hackathon, I presume.
FYI, python3-mmtf has just been mentioned as required by Debichem team.
A RFP bug has just been opened [1]. I am mi
Hello,
I need to thank you for this update. I had not looked at BioPython for a
lnnggg time. Pretty impressive how it all developed.
I found this
Bio.PDB.mmtf docstring test ... skipped, missing Python dependency
Bio.PDB.mmtf.DefaultParser docstring test ... skipped, missing Python
depen
On 12.06.20 18:39, Étienne Mollier wrote:
Hi Steffen,
Steffen Möller, on 2020-06-12 18:31:57 +0200:
I am at it - do you mind me adding you to the list of maintainers?
I suppose you meant the Uploaders field ? Sure, if it helps.
;) it helped in the past - also @Pranav and @Nilesh, you have
Hi Steffen,
Steffen Möller, on 2020-06-12 18:31:57 +0200:
> I am at it - do you mind me adding you to the list of maintainers?
I suppose you meant the Uploaders field ? Sure, if it helps.
Kind Regards,
--
Étienne Mollier
Fingerprint: 5ab1 4edf 63bb ccff 8b54 2fa9 59da 56fe fff3 882d
Help fi
I am at it - do you mind me adding you to the list of maintainers?
Best,
Steffen
On 11.06.20 23:54, Étienne Mollier wrote:
Greetings,
While working on #960756[1] affecting src:python-biopython[2] on
32bit architecture CPUs, uscan caught a newer version of the
library. So I took the liberty o
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