Hi Tanya,
On Fri, Jul 08, 2016 at 07:28:09PM +0300, merlettaia wrote:
> Your solution for reprof works, I've added README.test and for now it's
> ready (current testsuite checks only perl portion of code, I'll probably
> later add other test).
Having any test for the moment is helpful. Its uploa
Hi Andreas,
Your solution for reprof works, I've added README.test and for now it's
ready (current testsuite checks only perl portion of code, I'll probably
later add other test).
I've made tests for profphd-utils, it's ready for upload. For now I took 2
example files from profphd package - to tes
Hi Tanya,
On Tue, Jul 05, 2016 at 07:30:28PM +0300, merlettaia wrote:
> debuild -us -uc -b
Hint: I'm using debuild which is a more intelligent wrapper around this.
> - for the first time, all goes fine.
> When I run the same command again, I've got error message. Full error log
> is in attached
On Tue, Jul 05, 2016 at 05:10:59PM +0200, Andreas Tille wrote:
> > I haven't fixed lintian warning
> > `obsolete-url-in-packaging` yet - probably it should be overrided? Both
> > libraries are available only on code.google.com archive.
>
> I have at least removed this from debian/upstream/metadata
Hi Andreas,
When I run
debuild -us -uc -b
- for the first time, all goes fine.
When I run the same command again, I've got error message. Full error log
is in attached file.
2016-07-05 18:10 GMT+03:00 Andreas Tille :
> Hi Tanya,
>
> On Tue, Jul 05, 2016 at 04:39:18PM +0300, merlettaia wrote:
> >
Hi Tanya,
On Tue, Jul 05, 2016 at 04:39:18PM +0300, merlettaia wrote:
> Hi Andreas,
> I added descriptions for these packages (and they are ready for upload):
>
> > librg-blast-parser-perl, librg-utils-perl,
> > librostlab, librostlab-blast,
> > libzerg, libzerg-perl,
> > profisis, rate4site.
>
Hi Andreas,
I added descriptions for these packages (and they are ready for upload):
> librg-blast-parser-perl, librg-utils-perl,
> librostlab, librostlab-blast,
> libzerg, libzerg-perl,
> profisis, rate4site.
For libzerg and libzerg-perl, I haven't fixed lintian warning
`obsolete-url-in-packagin
Hi Tanya,
On Sat, Jul 02, 2016 at 01:50:20AM +0300, merlettaia wrote:
>
> It's optional in debian/control file, and it should be - pdb2pqr works
> without it, and it simply shows warning message. All my tests pass without
> apbs. Some of pdb2pqr upstream tests won't pass, because they suppose tha
Hi Andreas,
2016-07-02 0:32 GMT+03:00 Andreas Tille :
> Hi Tanya,
>
> On Fri, Jul 01, 2016 at 12:09:36PM +0300, merlettaia wrote:
> > That's why I think there
> > should be different order of commands, and this should fix that problem.
> At
> > least I tried to reproduce, it doesn't appear a
Hi Tanya,
On Fri, Jul 01, 2016 at 12:09:36PM +0300, merlettaia wrote:
> That's why I think there
> should be different order of commands, and this should fix that problem. At
> least I tried to reproduce, it doesn't appear any more. Please check my
> recent commit, and tell me if the error st
Hi Andreas,
2016-07-01 16:34 GMT+03:00 Andreas Tille :
> Hi Tanya,
>
> On Fri, Jul 01, 2016 at 12:09:36PM +0300, merlettaia wrote:
> > ...
> > least I tried to reproduce, it doesn't appear any more. Please check my
> > recent commit, and tell me if the error still appears.
>
> I think I need to c
Hi Tanya,
On Fri, Jul 01, 2016 at 12:09:36PM +0300, merlettaia wrote:
> ...
> least I tried to reproduce, it doesn't appear any more. Please check my
> recent commit, and tell me if the error still appears.
I think I need to check more thoroughly since I do not fully understand
without checking t
Hi Andreas,
I managed to reproduce conditions when that strange message with pdb2pqr
appears and when not:
It appears if I download, build, and call tests.
It doesn't appear if I download, *call quilt push -a*, build, call tests.
It also appears if I build project at first time, then *call quilt pu
Hi Tanya,
On Wed, Jun 29, 2016 at 01:35:38PM +0300, merlettaia wrote:
>
> 2016-06-22 11:39 GMT+03:00 Andreas Tille :
>
> > > Conservation-code,
> >
> > I realised that there is no such matrix blosum63.bla even in the source
> > package (only 62). Similarliy with swissprot1.distribution - we jus
Good morning Tanya,
thanks for your diligent and educated work on the topic. I'm impressed
about your performance.
On Wed, Jun 22, 2016 at 09:02:26AM +0300, merlettaia wrote:
> First part of this letter is just to inform you, but I also have several
> questions about packaging with perl for Rost
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