On Wed, Mar 08, 2017 at 02:26:48PM +0100, Andreas Tille wrote:
> So
> now its just waiting whether ftpmaster has some comments and than the
> package can migrate to the Debian archive.
Package was accepted and is now available in unstable. I added the
project as successful MoM effort to the Wiki
Hi Çağrı,
On Wed, Mar 08, 2017 at 02:41:18PM +0300, Çağrı ULAŞ wrote:
> I change watchdog with python-watchdog and try
>
> deepnano_basecall_no_metrichor --watch
>
> I couldn't understand what it's doing exactly.
>
> $ deepnano_basecall_no_metrichor --watch .
> loading complement net
> done
>
Hi Andreas,
I change watchdog with python-watchdog and try
deepnano_basecall_no_metrichor --watch
I couldn't understand what it's doing exactly.
$ deepnano_basecall_no_metrichor --watch .
loading complement net
done
loading 2D net
done
Watch dir: .
Starting Observerer
But it's not run while p
On Wed, Feb 22, 2017 at 08:20:01PM +0100, Andreas Tille wrote:
> On Wed, Feb 22, 2017 at 10:10:12PM +0300, Çağrı ULAŞ wrote:
> > But i think, this watchdog is not watchdog package, it's python-watchdog.
> > I'll try this parameter and push changes in tomorrow.
>
> Good we talked about this. ;-)
H
On Wed, Feb 22, 2017 at 10:10:12PM +0300, Çağrı ULAŞ wrote:
> But i think, this watchdog is not watchdog package, it's python-watchdog.
> I'll try this parameter and push changes in tomorrow.
Good we talked about this. ;-)
Kind regards
Andreas.
--
http://fam-tille.de
But i think, this watchdog is not watchdog package, it's python-watchdog.
I'll try this parameter and push changes in tomorrow.
2017-02-22 21:51 GMT+03:00 Çağrı ULAŞ :
>
> Hi Andreas,
>
> In README.md file they said:
>
> If you want to watch a directory for new files, first install:
>>
>>-
Hi Andreas,
In README.md file they said:
If you want to watch a directory for new files, first install:
>
>- watchdog==0.8.3
>
> And then use (the output parameter has no effect, we output separate fasta
> files for each fast5 file):
> OMP_NUM_THREADS=1 python basecall_no_metrichor.py --wa
Hi Çağrı,
On Wed, Feb 22, 2017 at 01:45:56AM +0300, Çağrı ULAŞ wrote:
> I made some changes and will push them soon. Add manpages for scripts,
> changes in testsuite etc.
Sounds good.
I checked this and noticed you added "Suggests: watchdog". Do you have
any specific reason for this suggestion?
Hi Andreas,
I made some changes and will push them soon. Add manpages for scripts,
changes in testsuite etc. But when writing manpages, I realize that
deepnano uses some files under nets_data/ in default arguments.
in source code:
parser.add_argument('--template_net', type=str, default="nets_dat
Hi,
On Wed, Feb 15, 2017 at 04:36:36PM +0300, Çağrı ULAŞ wrote:
> What exactly did you plan in connection with the poretools package?
I do not plan anything with poretools.
> In deepnano at debian/deepnano-data-files/test_data/ , there are 3 gz files.
> These files are copied from poretools sou
Hi Andreas,
What exactly did you plan in connection with the poretools package?
In deepnano at debian/deepnano-data-files/test_data/ , there are 3 gz files.
These files are copied from poretools source. Thanks to Afif, poretools-data
package is currently present in sid. So we can remove these fi
Hi,
sorry, left this project alone for close to three monthes despite
promising to have a look. The preparation of Squeeze got my full
interest. but now I had a look.
On Sat, Dec 17, 2016 at 12:55:35AM -0800, Afif Elghraoui wrote:
> Hi, Çağrı,
>
> على الجمعـة 16 كانون الأول 2016 21:06، كتب Çağ
Hi Çağrı,
On Sat, Dec 17, 2016 at 08:06:00AM +0300, Çağrı ULAŞ wrote:
>
> I push some changes for deepnano. Used a few poretools data for the
> deepnano-data because poretools use pybuild for packaging. When I create
> new package in control file (for split packaging) poretools package created
>
Hi, Çağrı,
على الجمعـة 16 كانون الأول 2016 21:06، كتب Çağrı ULAŞ:
> I push some changes for deepnano. Used a few poretools data for the
> deepnano-data because poretools use pybuild for packaging. When I create
> new package in control file (for split packaging) poretools package
> created with e
Hi Andreas,
I push some changes for deepnano. Used a few poretools data for the
deepnano-data because poretools use pybuild for packaging. When I create
new package in control file (for split packaging) poretools package created
with empty package. I dont want to change the way this package builde
Hi Çağrı,
any news?
Kind regards
Andreas.
On Fri, Dec 02, 2016 at 12:47:23AM +0300, Çağrı ULAŞ wrote:
> Hi Andreas,
>
> I already started to make poretools-data package. Had to make some
> practice on split packaging . It's almost done. When I finished
> I will upload them both.
>
> Re
Hi Andreas,
I already started to make poretools-data package. Had to make some
practice on split packaging . It's almost done. When I finished
I will upload them both.
Regards.
2016-12-01 16:00 GMT+03:00 Andreas Tille :
> Hi Çağrı,
>
> I wonder whether Afif's hint how to get the example files m
Hi Çağrı,
I wonder whether Afif's hint how to get the example files might have
been helpful for you. I admit I'm not keen to stick to the monthly
boundaries of the MoM projects but if deepnano should make it into
stretch we need to hurry up a bit.
Kind regards
Andreas.
On Wed, Nov 16, 2
Hello,
على الأربعاء 16 تشرين الثاني 2016 01:50، كتب Çağrı ULAŞ:
>
> I finally find fast5 files from poretools which is an utility for
> converting fast5 to fasta/fastq file. There are fast5 examples on
> poretools' github page. Is there any thing we need to specify for this
> data in debian dire
Hi Andreas,
I finally find fast5 files from poretools which is an utility for
converting fast5 to fasta/fastq file. There are fast5 examples on
poretools' github page. Is there any thing we need to specify for this data
in debian directory?
Regards
2016-11-12 1:01 GMT+03:00 Andreas Tille :
> Hi
Hi,
On Fri, Nov 11, 2016 at 08:34:15PM +0200, Çağrı ULAŞ wrote:
> Working on autopkgtest but I have issues with deepnano. There are no man
> pages or example files I found.
Did you tried -h/--help options that might be used with help2man?
> Only bitbucket page have a basic usage but
> this is mo
Hi Andreas,
Working on autopkgtest but I have issues with deepnano. There are no man
pages or example files I found. Only bitbucket page have a basic usage but
this is more different from classic alignment tools. I try to run with some
.npz datas in nets_data directory. But give me an error 'Unab
Ping? Usually the mentor should require more frequents (at best daily
reports). I failed in beeing that strict but to get the package ready
at the end of the month we should increase the frequency of
communication.
Kind regards
Andreas.
On Thu, Oct 27, 2016 at 08:23:24AM +0200, Andreas Til
Hi Çağrı,
On Thu, Oct 27, 2016 at 03:44:19AM +0300, Çağrı ULAŞ wrote:
> Sorry for delayed reply. I filed an ITP but I cant get how to track it. It
> said:
>
> If you want to provide additional information, please wait to receive the
> > bug tracking number via email, ...
> >
>
> but I did not ge
Hi Andreas,
Sorry for delayed reply. I filed an ITP but I cant get how to track it. It
said:
If you want to provide additional information, please wait to receive the
> bug tracking number via email, ...
>
but I did not get any email. Is this may take time? What should I do to
know is it worked?
Hi,
On Thu, Oct 20, 2016 at 03:55:02PM +0300, Çağrı ULAŞ wrote:
> I cannot find any e-mail unfortunately. Try to contact via bitbucket but i
> think bitbucket sends messages to email.
> Yes, I successfully built it and run it. I'll try to write autopkgtest and
> find out how can file an ITP.
Did
I cannot find any e-mail unfortunately. Try to contact via bitbucket
but i think bitbucket sends messages to email.
Yes, I successfully built it and run it. I'll try to write autopkgtest
and find out how can file an ITP.
Thanks for your help.
Best Regards
Çağrı ULAŞ
about.me/cagriulas
On Thu
Hi Çağrı,
On Thu, Oct 20, 2016 at 03:17:22PM +0300, Çağrı ULAŞ wrote:
> I try to reach Vlado Boza (deepnano's maintainer) from bitbucket but he has
> not reply yet.
If you contacted the maintainer vie e-mail please always CC this list.
It would be nice to bounce your e-mail you've sent or send th
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