Re: New upstream version of drop-seq does not build

2021-10-13 Thread Pierre Gruet
Hi Andreas, Le 13/10/2021 à 07:38, Andreas Tille a écrit : Hi Pierre, Am Tue, Oct 12, 2021 at 09:13:49PM +0200 schrieb Pierre Gruet: Cool. I also think we should pimp biojava4 watch file to return the last upstream source of biojava4 and than also provide biojava5. We will soon see upstreams

Re: New upstream version of drop-seq does not build

2021-10-12 Thread Andreas Tille
Hi Pierre, Am Tue, Oct 12, 2021 at 09:13:49PM +0200 schrieb Pierre Gruet: > > Cool. I also think we should pimp biojava4 watch file to return the last > > upstream source of biojava4 and than also provide biojava5. We will soon > > see upstreams using this and may be we can migrate existing pack

Re: New upstream version of drop-seq does not build

2021-10-12 Thread Pierre Gruet
Hi again, Le 12/10/2021 à 18:58, Andreas Tille a écrit : Hi Pierre, Am Tue, Oct 12, 2021 at 03:29:33PM +0200 schrieb Pierre Gruet: I have added biojava4 as a dependency, then some paths had to be changed because upstream relies on a far outdated version of biojava, and then I had to revise

Re: New upstream version of drop-seq does not build

2021-10-12 Thread Andreas Tille
Hi Pierre, Am Tue, Oct 12, 2021 at 03:29:33PM +0200 schrieb Pierre Gruet: > > Ahhh, I should have checked this. Somehow I'm starting to get blind for > > such > > simple things when upgrading all those packages. ;-) > > I can understand this :-D :-) > I have added biojava4 as a dependency, t

Re: New upstream version of drop-seq does not build

2021-10-12 Thread Pierre Gruet
Hi again, Le 12/10/2021 à 15:24, Andreas Tille a écrit : Am Tue, Oct 12, 2021 at 12:12:43PM +0200 schrieb Pierre Gruet: Thanks for pointing this out; I looked at it and saw biojava has not been a dependency of drop-seq until now. It seems version 2.4.1 is the first to need biojava. So I will tr

Re: New upstream version of drop-seq does not build

2021-10-12 Thread Andreas Tille
Am Tue, Oct 12, 2021 at 12:12:43PM +0200 schrieb Pierre Gruet: > Thanks for pointing this out; I looked at it and saw biojava has not been a > dependency of drop-seq until now. It seems version 2.4.1 is the first to > need biojava. So I will try to add biojava4 as a dependency and see if > drop-seq

Re: New upstream version of drop-seq does not build

2021-10-12 Thread Pierre Gruet
Hi Andreas, Le 12/10/2021 à 09:59, Andreas Tille a écrit : Hi Pierre, I realised that you updated Git of drop-seq to fix the watch file. I simply uploaded basically as is to have a proper signal in our tools that there is a new upstream version. Unfortunately I realised that there seems to be

New upstream version of drop-seq does not build

2021-10-12 Thread Andreas Tille
Hi Pierre, I realised that you updated Git of drop-seq to fix the watch file. I simply uploaded basically as is to have a proper signal in our tools that there is a new upstream version. Unfortunately I realised that there seems to be an issue with the new version 2.4.1 and Debian's biojava. I