Re: Can we remove probabel?

2022-02-20 Thread L.C. Karssen
ian.org/popcon-graph.php?packages=probabel&show_vote=on&want_legend=on&want_ticks=on&from_date=&to_date=&hlght_date=&date_fmt=%25Y-%25m&beenhere=1 > -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen 's-Hertogenbosch The Netherlands lenn...@karssen.org http://blog.karssen.org GPG key ID: A88F554A -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

Re: Open-source MRI hardware initiative project

2016-05-03 Thread L.C. Karssen
ource Software: How to Run a Successful Free Software Project. http://www.producingoss.com/ > > Lionel > > > The University of Aberdeen is a charity registered in Scotland, No SC013683. > Tha Oilthigh Obar Dheathain na charthannas clàraichte ann an Alba, Àir. > SC013683. >

Re: [med-svn] [probabel] 03/03: New upstream version; use Arch: any in d/control

2015-07-10 Thread L.C. Karssen
1981 > + > + -- Andreas Tille Fri, 10 Jul 2015 06:23:00 +0200 > + > probabel (0.4.4-1) experimental; urgency=medium > >[ L.C. Karssen ] > diff --git a/debian/control b/debian/control > index e80632d..c4fc594 100644 > --- a/debian/control > +++ b/debian/con

Re: How to upload to Debian Med PPA

2015-03-25 Thread L.C. Karssen
; ~/.pbuilderrc-ubuntu > sudo cowbuilder --create --basepath /var/cache/pbuilder/trusty.cow > --mirror http://de.archive.ubuntu.com/ubuntu/ --distribution trusty \ > --debootstrapopts > "--keyring=/usr/share/keyrings/ubuntu-archive-keyring.gpg" \ >

Re: Plink2 (Was: Bug#771154: plink: New major upstream version of plink)

2015-01-09 Thread L.C. Karssen
gt; 4. Others solutions? > > Hoping for more input here as well. > > Kind regards and thanks for your work on this Indeed, thanks for packaging this Dylan! Best regards, Lennart. > > Andreas. > > >> [1] https://github.com/chrchang/plink-ng/issues/12 > > [2]

Re: Request for sponsoring upload of probabel-0.4.4

2014-11-14 Thread L.C. Karssen
you. Otherwise probabel might get an auto-remove from testing if there > would be a "long standing" RC bug in a leaf package. -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http:/

Re: Request for sponsoring upload of probabel-0.4.4

2014-11-11 Thread L.C. Karssen
to upload a new package revision. > Thanks for the tip. I've added it to my "publish-to-Debian-med-workflow" document :-). > On Mon, Nov 10, 2014 at 04:50:05PM +0100, L.C. Karssen wrote: >> Hi Andreas, >> >> Thanks for having a look at my request

Re: Request for sponsoring upload of probabel-0.4.4

2014-11-10 Thread L.C. Karssen
a lot, Lennart. > > Kind regards > > Andreas. > > On Mon, Nov 10, 2014 at 10:09:12AM +0100, L.C. Karssen wrote: >> Dear list, >> >> I've packaged the latest version of ProbABEL (see the git repo [1]), >> which is a bugfix releas

Request for sponsoring upload of probabel-0.4.4

2014-11-10 Thread L.C. Karssen
ebian.org/debian-med/probabel.git [2] http://qa.debian.org/bls/packages/p/probabel.html -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org GPG key ID: A88F554A -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*- signa

Re: Compiling binaries on package installation

2014-10-14 Thread L.C. Karssen
ve, you'd only need to do it once on a frontend > box. But what if you have a mixed setup, like I've seen in several medical/biology groups: a handful of servers are bought one by one and then interconnected. In such a case Yaroslav's suggestion would still choose the correct

Re: Compiling binaries on package installation

2014-10-14 Thread L.C. Karssen
; using "registered" within matlab-support alternatives instance of > user-installed Matlab. So far seemed to work quite neat. Thanks for the pointer. I'll have a look! Lennart. > > Cheers, > -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org GPG key ID: A88F554A -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*- signature.asc Description: OpenPGP digital signature

Re: Compiling binaries on package installation

2014-10-14 Thread L.C. Karssen
Hi Michael, Thanks for the quick reply. On 14-10-14 14:14, Michael Banck wrote: > Hi, > > On Tue, Oct 14, 2014 at 02:00:08PM +0200, L.C. Karssen wrote: >> I'm working on a tool that uses linear algebra libraries like Lapack and >> OpenBLAS. >> Normally I woul

Compiling binaries on package installation

2014-10-14 Thread L.C. Karssen
E.Debian file of openblas-base? Thanks, Lennart. -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org GPG key ID: A88F554A -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*- -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

Ubuntu Scientists team

2014-08-13 Thread L.C. Karssen
tists [2] https://launchpad.net/~debian-med -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org GPG key ID: A88F554A -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*- signature.asc Description: OpenPGP digital signature

Re: r-cran-genabel: SVN r17252 missing doRUnit.R

2014-07-01 Thread L.C. Karssen
Hi Andreas, Sorry for the long overdue response. On 20-06-14 13:23, Andreas Tille wrote: > Hi Lennart, > > thanks for your quick response. > > On Fri, Jun 20, 2014 at 12:13:20PM +0200, L.C. Karssen wrote: >> Hi Andreas, >> >> I just noticed you committed

r-cran-genabel: SVN r17252 missing doRUnit.R

2014-06-20 Thread L.C. Karssen
. I'm not sure why this was done, but I'll include it again in our next upstream release unless one of the other members of our team can explain why it is removed. Thanks for spotting this and for packaging GenABEL! Best, Lennart. -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.

probabel-0.4.3-2 fix and bug reports

2014-05-09 Thread L.C. Karssen
have an RSS feed. I noticed the e-mail subscription box at the bottom of the PTS page. Is that the correct way? Thanks, Lennart. [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=747008 [2] http://packages.qa.debian.org/p/probabel.html -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C.

Re: Mailing list usage (Was: Reporting of bugs in package VCS repos)

2014-04-24 Thread L.C. Karssen
ags. What do others > think about it? I personally like having a [list] tag in the subject. For visual sorting, as mentioned by Roland. However, I currently sort DebianMed mail based on the From: header and that works fine as well. Best regards, Lennart. > > Kind regards > >

Re: Checking build errors

2014-01-27 Thread L.C. Karssen
Hi Andreas, On 26-01-14 16:21, Andreas Tille wrote: > Hi Lennart, > > On Sun, Jan 26, 2014 at 02:15:49PM +0100, L.C. Karssen wrote: >> >> I've already added a bug in upstream's bug tracker [1]. > > +1 > >> However, wearing >> my upstream h

Re: Checking build errors

2014-01-26 Thread L.C. Karssen
Hi Andreas, On 24-01-14 09:58, Andreas Tille wrote: > Hi Lennart, > > On Fri, Jan 24, 2014 at 09:24:15AM +0100, L.C. Karssen wrote: >> Dear list, >> >> Here's a follow up on what the debian-mentor list said: >> - Ask your sponsor to log in to the porte

Re: Checking build errors

2014-01-24 Thread L.C. Karssen
fixes the endian issue or I should mask the big-endian machines in the control file. Thanks to Paul Wise, Tobias Frost and Gert Wollny for their input and time! Lennart. On 21-01-14 14:40, L.C. Karssen wrote: > Hi Andreas, > > Thanks for the suggestion. I'll try the debian-mento

Re: Checking build errors

2014-01-21 Thread L.C. Karssen
Hi Andreas, Thanks for the suggestion. I'll try the debian-mentor list. I'll update this list when I get an answer. Best, Lennart. On 21-01-14 10:56, Andreas Tille wrote: > Hi Lennart, > > On Tue, Jan 21, 2014 at 09:19:09AM +0100, L.C. Karssen wrote: >> >>

Checking build errors

2014-01-21 Thread L.C. Karssen
mp;arch=powerpc&ver=0.4.2-2&stamp=1389995634 -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org GPG key ID: A88F554A -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*- signature.asc Description: OpenPGP digital signature

Re: [MoM] New upstream release of ProbABELL

2014-01-17 Thread L.C. Karssen
Hi Andreas, On 16-01-14 21:38, Andreas Tille wrote: > Hi Lennart, > > On Thu, Jan 16, 2014 at 06:30:32PM +0100, L.C. Karssen wrote: >> Dear Andreas, >> >> I just pushed a small fix for and incorrect symlink in ProbABEL. Could >> you please check and, if ok, pus

Re: [MoM] New upstream release of ProbABEL

2014-01-16 Thread L.C. Karssen
Dear Andreas, I just pushed a small fix for and incorrect symlink in ProbABEL. Could you please check and, if ok, push v0.4.2-2? Thanks for your time and effort, Lennart. On 15-01-14 17:41, L.C. Karssen wrote: > Hi Andreas, > > On 15-01-14 17:17, Andreas Tille wrote: >> Hi, &g

Re: [MoM] New upstream release of ProbABEL

2014-01-15 Thread L.C. Karssen
Hi Andreas, On 15-01-14 17:17, Andreas Tille wrote: > Hi, > > On Wed, Jan 15, 2014 at 05:07:40PM +0100, L.C. Karssen wrote: >> Hmmm, I just noticed an e-mail from Debian FTP masters (sent at 16:29) >> that v0.4.2-1 was accepted into unstable. I guess that was my >&

Re: [MoM] New upstream release of ProbABEL

2014-01-15 Thread L.C. Karssen
see UNRELEASED in d/changelog... Thanks for helping me understand :-), Lennart. On 15-01-14 16:57, L.C. Karssen wrote: > Hi Andreas, > > On 14-01-14 16:59, Andreas Tille wrote: >> On Tue, Jan 14, 2014 at 04:29:43PM +0100, L.C. Karssen wrote: >>> Hi Andreas, >>&g

Re: [MoM] New upstream release of ProbABEL

2014-01-15 Thread L.C. Karssen
Hi Andreas, On 14-01-14 16:59, Andreas Tille wrote: > On Tue, Jan 14, 2014 at 04:29:43PM +0100, L.C. Karssen wrote: >> Hi Andreas, >> >> On 13-01-14 22:42, Andreas Tille wrote: >>> Hi Lennart, >>> >>> On Mon, Jan 13, 2014 at 06:40:10PM +0100, L.C.

Re: [MoM] New upstream release of ProbABEL

2014-01-14 Thread L.C. Karssen
Hi Andreas, On 13-01-14 22:42, Andreas Tille wrote: > Hi Lennart, > > On Mon, Jan 13, 2014 at 06:40:10PM +0100, L.C. Karssen wrote: > > > $ git checkout pristine-tar > Gewechselt zu Branch 'pristine-tar' > Ihr Branch ist auf dem selben Stand wie 'origi

Re: [MoM] New upstream release of ProbABEL

2014-01-13 Thread L.C. Karssen
Hi Andreas, On 13-01-14 18:14, Andreas Tille wrote: > Hi Lennart, > > On Mon, Jan 13, 2014 at 06:05:53PM +0100, L.C. Karssen wrote: >> Dear Andreas and others, >> >> I just pushed a new upstream release of probabel to git. On my systems >> this builds on Debian t

Re: Question about debian/upstream reference

2014-01-09 Thread L.C. Karssen
of the citation. >> >> For precise information on how to cite articles from a particular >> journal, visit that journal's website. >> >> If you have any questions please do not hesitate to contact me. >> >> Best wishes >> >>

Re: Question about debian/upstream reference

2014-01-08 Thread L.C. Karssen
ion doesn't seem to indicate whether time stamps > must be fully qualified, so it may actually be a feature ;) > > Cheers, > Gert > > > -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.o

Re: Aw: Re: [MoM] Problem reproducing bug in ProbABEL package

2014-01-01 Thread L.C. Karssen
initely 'cleaner'/'nicer'. I'll update the d/changelog to prepare for probabel_0.4.1-2. Thanks for your help and insights. Lennart. On 01-01-14 23:07, "Steffen Möller" wrote: > Hi all, > > >> >> On Wed, Jan 01, 2014 at 08:44:20PM +0100,

Re: [MoM] Problem reproducing bug in ProbABEL package

2014-01-01 Thread L.C. Karssen
Hi Andreas, On 01-01-14 17:37, Andreas Tille wrote: > Hi Lennart, > > On Wed, Jan 01, 2014 at 05:23:26PM +0100, L.C. Karssen wrote: >> >> This bug also seems to occur on many architectures according to the >> buildd log files at [2]. >> >> The problem i

Re: Aw: [MoM] Problem reproducing bug in ProbABEL package

2014-01-01 Thread L.C. Karssen
a lot, Lennart. > Best, > > Steffen > > > >> Gesendet: Mittwoch, 01. Januar 2014 um 17:23 Uhr >> Von: "L.C. Karssen" >> An: debian-med@lists.debian.org >> Betreff: [MoM] Problem reproducing bug in ProbABEL package >> >> Dear list, >&

[MoM] Problem reproducing bug in ProbABEL package

2014-01-01 Thread L.C. Karssen
t work on the buildd servers (looking at the error message the chmod binary is found, so that's not the problem)? Thanks for your input, Lennart. [1] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=733616 [2] https://buildd.debian.org/status/package.php?p=probabel -- -------

Re: [MoM] ProbABEL

2013-12-29 Thread L.C. Karssen
Hi Andreas, On 29-12-13 19:32, Andreas Tille wrote: > Hi Lennart, > > On Sun, Dec 29, 2013 at 01:33:03AM +0100, L.C. Karssen wrote: >> As you can see below, the package of ProbABEL was rejected by the FTP >> masters. >> I've added the requested licence informa

[MoM] ProbABEL (was: Re: probabel_0.4.1-1_amd64.changes REJECTED)

2013-12-28 Thread L.C. Karssen
ur files were rejected, or if you upload new files which address our > concerns. > -- - L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org Stuur mij aub geen Word of Powerpoint bestanden! Zie http://www.gnu.org/philosophy/no-word-attachments.nl.html --

Re: [MoM] ProbABEL packaging

2013-12-18 Thread L.C. Karssen
Hi Andreas, On 17-12-13 10:37, Andreas Tille wrote: > Hi Lennart, > > On Tue, Dec 17, 2013 at 12:17:47AM +0100, L.C. Karssen wrote: >> >> >> Thanks for these hints. In took me a wile to figure it out, but it >> turned out to be simple. The main missing pie

Re: [MoM] ProbABEL packaging

2013-12-16 Thread L.C. Karssen
ts? I think with this we are ready for upload, right? Maybe a final change in d/changelog to replace the UNRELEASED tag? Best, Lennart. > > Just let me know if you need further hints or a kick start I could > inject right in

Re: [MoM] ProbABEL packaging

2013-12-16 Thread L.C. Karssen
Hi Andreas, On 13-12-13 16:26, Andreas Tille wrote: > Hi Lennart, > > On Fri, Dec 13, 2013 at 04:05:36PM +0100, L.C. Karssen wrote: >>> since your last commit probabel builds for me nicely. I think this is a >>> good point in time to create a WNPP bug (using reportb

Bug#732264: ITP: probabel -- Toolset for Genome-Wide Association Analysis

2013-12-15 Thread L.C. Karssen
Package: wnpp Severity: wishlist Owner: "Debian Med team" * Package name: probabel Version : 0.4.1 Upstream Author : L.C. Karssen * URL : http://www.genabel.org/packages/ProbABEL * License : GPL Programming Lang: C, C++, Perl Description : T

Re: [MoM] ProbABEL packaging

2013-12-13 Thread L.C. Karssen
depends from your specific knowledge what might be the > best solution here. > > Hope this helps > > Andreas. > -- - L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org Stuur

Re: [MoM] ProbABEL packaging

2013-12-13 Thread L.C. Karssen
build in pbuilder (and are you sure you pushed everything)? Ah, my bad. I Ran the wrong pbuilder (Ubuntu). Debian Wheezy doesn't have the new automake yet. Is there a way to tell quilt to skip a patch (instead of removing it)? That way I could test whether not applying the patch to autoconf.

Re: [MoM] ProbABEL packaging

2013-12-13 Thread L.C. Karssen
Hi Andreas, On 12-12-13 09:32, Andreas Tille wrote: > Hi Lennart, > > On Thu, Dec 12, 2013 at 09:20:39AM +0100, L.C. Karssen wrote: >> Hi Andreas, >>> Sorry, what is "dquilt" - I only know quilt (without the d in the >>> beginning)? >> >> d

Re: [MoM] ProbABEL packaging

2013-12-12 Thread L.C. Karssen
Hi Andreas, On 12-12-13 09:06, Andreas Tille wrote: > On Wed, Dec 11, 2013 at 11:19:25PM +0100, L.C. Karssen wrote: >>>> For the extIDS.pl file I would like to solve the problem by installing >>>> it in the examples directory (that's where it actually belongs, it

Re: [MoM] ProbABEL packaging

2013-12-11 Thread L.C. Karssen
On 11-12-13 21:34, Andreas Tille wrote: > Hi Lennart, > > just commit+push your patch and I'll check. Done! Lennart. > > Kind regards > >Andreas. > > On Wed, Dec 11, 2013 at 05:10:01PM +0100, L.C. Karssen wrote: >> Hi Andreas, >> >&

Re: [MoM] ProbABEL packaging

2013-12-11 Thread L.C. Karssen
A = prepare_data.R +dist_script_DATA = prepare_data.R extIDS.pl ## Install the config file dist_sysconf_DATA = probabel_config.cfg.example Any suggestions? Thanks, Lennart. -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands l

Re: [MoM] ProbABEL packaging

2013-12-11 Thread L.C. Karssen
On 10-12-13 19:23, Andreas Tille wrote: > On Tue, Dec 10, 2013 at 03:09:46PM +0100, L.C. Karssen wrote: > >>> override_dh_installdocs: >>> dh_installdocs >>> find debian -name INSTALL -delete >>> rm -f debian/$(DEBPKGNAME)/usr/share/

Re: [MoM] ProbABEL packaging

2013-12-10 Thread L.C. Karssen
Hi Andreas, On 10-12-13 08:50, Andreas Tille wrote: > Hi Lennart, > > On Mon, Dec 09, 2013 at 11:39:48PM +0100, L.C. Karssen wrote: >> Ah, I see: >> $ git tag >> upstream/0.4.1 >> So git push --tags will do the job. > > Yes. Done. > >>>

Re: [MoM] ProbABEL packaging

2013-12-09 Thread L.C. Karssen
Hi Andreas, On 09-12-13 15:19, Andreas Tille wrote: > Hi, > > On Mon, Dec 09, 2013 at 02:49:38PM +0100, L.C. Karssen wrote: >>> >>> git push --tags >>> >>> since no tags are set yet and at least the upstream version should be >>

Re: [MoM] ProbABEL packaging

2013-12-09 Thread L.C. Karssen
Hi Andreas, Thanks for the feedback. On 09-12-13 09:11, Andreas Tille wrote: > Hi Lennart, > > On Sun, Dec 08, 2013 at 11:17:19PM +0100, L.C. Karssen wrote: > > Seems this has worked since I'm able to rungit-buildpackage. Please do > not forget > > git p

Re: [MoM] ProbABEL packaging

2013-12-08 Thread L.C. Karssen
branch master has no upstream branch. To push the current branch and set the remote as upstream, use git push --set-upstream origin master Comments welcome! Best, Lennart. On 04-12-13 23:06, Andreas Tille wrote: > Hi Lennart > > On Wed, Dec 04, 2013 at 10:40:53PM +0100, L.C

Re: [MoM] ProbABEL packaging

2013-12-04 Thread L.C. Karssen
is deemed good enough for uploading. >> >> Yes. Sounds like right. With 3) done, it is also not unlikely that >> your reviewers just performs smallish changes and then uploads without >> bothering you with it. > > ... Steffen says it in other words. ;-) > >>

Re: Aw: [MoM] ProbABEL packaging

2013-12-04 Thread L.C. Karssen
n the comments by the mentor > >> 6) repeat 4) and 5) until the package is deemed good enough for uploading. > > Yes. Sounds like right. With 3) done, it is also not unlikely that > your reviewers just performs smallish changes and then uploads without > bothering you with i

[MoM] ProbABEL packaging

2013-12-04 Thread L.C. Karssen
oot/genabel/pkg/ProbABEL -- ------------- L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org Stuur mij aub geen Word of Powerpoint bestanden! Zie http://www.gnu.org/philosophy/no-word-atta

Introducing myself; willing to package ProbABEL

2013-12-03 Thread L.C. Karssen
robABEL [2] https://launchpad.net/~l.c.karssen/+archive/genabel-ppa [3] http://www.genabel.org -- *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* L.C. Karssen Utrecht The Netherlands lenn...@karssen.org http://blog.karssen.org GPG key ID