Strap: Depend on texlive-latex-extra

2013-02-03 Thread Dr. med. Christoph Gille
Hi Andreas > It's nice to see strap-base converging more and more to some uploadable Slowly I get into it and understand the philosphy behind. As a side effect I improved my knowledge on quite a few technologies like SVN and Makefile. > I spotted some final issue inside the resulting package: I

strap-base: /usr/share

2013-01-31 Thread Dr. med. Christoph Gille
> but JAR files are arch-indep files. I guess your intended to move it rather > to /usr/share/strap-base Thanks Andreas, now I understand /usr/share/ is for architecture independent. Yes indeed, this is exactly what I want. I also installed the other two architecture independent files here

strap, strap-base, lintian warnings solved

2013-01-29 Thread Dr. med. Christoph Gille
Hi all, I have fixed the copyright file and man pages. Made a README.Debian explaining the classpath issue and why the jar file is in /usr/shar/strap-base/ rather than in /usr/share/java/ Still get the lintian warning "newer-standards-version 3.9.4 " even though I updated with apt-get -t unstabl

strap-base: Upstream error fixed

2013-01-24 Thread Dr. med. Christoph Gille
Hi all, I had an error in the upstream tgz of the package strap-base. Now fixed. I eliminated all non-ascii characters with an tr-filter. I incremented the upstream version in the changelog file. debuild -uc -us should work. Cheers Christoph -- To UNSUBSCRIBE, email to debian-med-requ...@

now debuild works for strap and strap-base

2013-01-23 Thread Dr. med. Christoph Gille
I have simplified the debian packages strap and strap-base by moving the installation logic from the rules file to the upstream Makefile. Now it works with debuild -uc -us. My previous error was that I symlinked the debian directory into the unpacked upstream directory instead of copying it. Ther

Packages for Strap finished. Please have a look

2013-01-13 Thread Dr. med. Christoph Gille
Hi all, I have worked hard on the packages strap-base and strap and to the best of my knowledge the packages are now OK. There are no lintian errors or warnings any more. The two generated package files strap_1_all.deb strap-base_1-1_i386.deb work perfectly on a VirtualBox XUbuntu testing machine

Re: package strap and strap-base work

2012-07-23 Thread Dr. med. Christoph Gille
> Hi Christoph, Hi Andreas, You mean to make a debian package called biological-mime-data which has only one file: biological-mime-data.sharedmimeinfo? It is not yet clear to me of how a program like Firefox or file browser thunar requests the mime information from the debian system. Does it run

Re: [MoM] Any student for June - dcm4chee

2012-06-06 Thread Dr. med. Christoph Gille
>May I suggest you consider packages dcm4chee (perhaps later >if not during MoM) :-) > >dcm4chee is likely the most important application in the >Practice of Medicine domain after VistA. Hi Karsten, dcm4chee is based on jboss application server. I have to admit, that I have never worked with it J

Re: [MoM] Any student for June?

2012-06-06 Thread Dr. med. Christoph Gille
Hi All, I would be interested to become a student. Later, when I am confident with the packaging system I could help others. My plans: 1. Get debian package for Strap working. Strap is a free program to compare proteins by sequence and 3D-structure. It is used by scientists to produce hig

Re: ITP strap-base - Some questions

2012-05-31 Thread Dr. med. Christoph Gille
Hi Andreas, Hi Charles, You mean svn commit -m "some text" ? I completely forgot about this. I had to explore svn since I have not worked with svn before. I become more and more confident with the build system but I still encounter some minor problems. Do I need svn commit each time I try packag

ITP strap-base - Code-base for Strap - A GUI for aligning proteins by sequence and structure

2012-05-30 Thread Dr. med. Christoph Gille
Package: wnpp Version: 1 Severity: wishlist Package name : science Version : 1 Upstream Christoph Gille : christoph...@googlemail.com URL : http://3d-alignment.eu/ License : GPL Description: strap-base contains the code base for the protein workbench STRAP -- To UNSUBSCRIBE, email to debian

Re: Neobio additional remarks

2011-11-18 Thread Dr. med. Christoph Gille
Thanks Andreas, I tried to turn the postscript file into an ascii file, but had not been successful. This is what I did: - cat Crochemore_Landau_Ziv-Ukelson_algorithm.ps | strings shortens the file but damages it. The resultinhg file cannot be viewed with ghostview - Replace non-asci by a

My first package

2011-11-05 Thread Dr. med. Christoph Gille
Hi all, I have created my first debian package and hope that there are not so many errors. It compiles and the resulting neobio_1.orig.tar.gz works on my computer. Could you please review it: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/neobio/trunk/debian/ You can create the ..