Bug#1014344: ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code

2022-07-04 Thread Pierre Gruet
Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org * Package name: gatk-bwamem Version : 1.0.4 Upstream Author : Broad Institute * URL : https://github.com/broadinstitute/gatk-bwamem-jni/ * L

Re: Added autopkgtest for biomaj3-cli,gdcm

2022-07-04 Thread Nilesh Patra
On 7/4/22 5:28 PM, Mohd Bilal wrote: Hello team, I've added autopkgtest for biomaj3-cli[1] Unfortunately that is not an autopkgtest, only a smoke test (which does nothing more than an `import`) Can you add in a proper test for it? and gdcm[2]. Requesting someone to review and sponsor these

Re: Added autopkgtest for biomaj3-cli,gdcm

2022-07-04 Thread Mathieu Malaterre
On Mon, Jul 4, 2022 at 1:58 PM Mohd Bilal wrote: > > Hello team, > > I've added autopkgtest for biomaj3-cli[1] and gdcm[2]. Requesting > someone to review and sponsor these changes. For gdcm this looks good. Also `--continue -r` options don't mean much when processing a single DICOM file... > Al

Added autopkgtest for biomaj3-cli,gdcm

2022-07-04 Thread Mohd Bilal
Hello team, I've added autopkgtest for biomaj3-cli[1] and gdcm[2]. Requesting someone to review and sponsor these changes. Also I'm trying to add autopkgtest for elastix but I'm blocked by a build failure in the CI. It looks like a problem with CI to me.Can anyone help in fixing this build f