Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree?

2022-03-21 Thread Aaron M. Ucko
Andreas Tille writes: > ERR [127] -- [util/lmdb] lmdb_test.sh 1 (unparsable timing stats) Please try declaring a build dependency on time. FTR, my previous suggestion (switching from --with-dll to --without-dll) addressed an unrelated concern Steffen had raised, namely using a very similar

Re: ismrmrd has cmake build issue

2022-03-21 Thread Mathieu Malaterre
On Mon, Mar 21, 2022 at 2:49 PM Andreas Tille wrote: > > Hi Mathieu, > > Am Mon, Mar 21, 2022 at 02:03:56PM +0100 schrieb Mathieu Malaterre: > > > > On Mon, Mar 21, 2022 at 1:44 PM Andreas Tille wrote: > > > I injected the new version of ismrmrd but it does not build as you can > > > see in Salsa

Re: ismrmrd has cmake build issue

2022-03-21 Thread Andreas Tille
Hi Mathieu, Am Mon, Mar 21, 2022 at 02:03:56PM +0100 schrieb Mathieu Malaterre: > > On Mon, Mar 21, 2022 at 1:44 PM Andreas Tille wrote: > > I injected the new version of ismrmrd but it does not build as you can > > see in Salsa CI[1]. I reported this upstream[2] but they can not > > reproduce

Re: ismrmrd has cmake build issue

2022-03-21 Thread Mathieu Malaterre
Andreas, On Mon, Mar 21, 2022 at 1:44 PM Andreas Tille wrote: > > Hi, > > I injected the new version of ismrmrd but it does not build as you can > see in Salsa CI[1]. I reported this upstream[2] but they can not > reproduce the issue. I tried my own luck with a patch to make sure > the header f

ismrmrd has cmake build issue

2022-03-21 Thread Andreas Tille
Hi, I injected the new version of ismrmrd but it does not build as you can see in Salsa CI[1]. I reported this upstream[2] but they can not reproduce the issue. I tried my own luck with a patch to make sure the header files will be found: --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -207,6 +20

Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree?

2022-03-21 Thread Andreas Tille
Hi Aaron, Am Thu, May 07, 2020 at 10:36:55AM -0400 schrieb Aaron M. Ucko: > Steffen Möller writes: > > > This ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.15.0/ is > > where I got the source tree. It is not the case that igblast also occurs > > elsewhere, say together with the regu