Re: Bug#996993: ITP: biojava5-live -- Java API to biological data and applications (version 5)

2021-10-21 Thread Andreas Tille
Thanks a lot for this, Andreas. Am Fri, Oct 22, 2021 at 07:32:06AM +0200 schrieb Pierre Gruet: > Package: wnpp > Severity: wishlist > Owner: Debian-med team > X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org > > * Package name: biojava5-live > Version : 5.4.

Re: Bug#984243: Help: mothur: ftbfs with GCC-11

2021-10-21 Thread Andreas Tille
Hi Aaron, Am Thu, Oct 21, 2021 at 04:21:26PM -0400 schrieb Aaron M. Ucko: > > No, because std::byte supports far too few operations [1]. Instead, I'd > suggest encouraging upstream to rename their type, and meanwhile locally > patching source/uchime_src/makefile to add -std=c++14 to CXXFLAGS, >

Bug#996993: ITP: biojava5-live -- Java API to biological data and applications (version 5)

2021-10-21 Thread Pierre Gruet
Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org * Package name: biojava5-live Version : 5.4.0 Upstream Author : BioJava Developers * URL : https://www.biojava.org/ * License : LGP

Re: Help: mothur: ftbfs with GCC-11

2021-10-21 Thread Étienne Mollier
Hi Andreas, Andreas Tille, on 2021-10-21: > In file included from addtargets2.cpp:3: > myutils.h:176:1: error: reference to 'byte' is ambiguous Since C++ 2017, the std::byte type is defined: > 176 | byte *ReadAllStdioFile(FILE *f, off_t &FileSize); > | ^~~~ > In file included from /usr/i

Re: Bug#984243: Help: mothur: ftbfs with GCC-11

2021-10-21 Thread Aaron M. Ucko
Steffen Möller writes: > My C++ skills are a bit rosty but would removing the typedef for byte > solve the problem? No, because std::byte supports far too few operations [1]. Instead, I'd suggest encouraging upstream to rename their type, and meanwhile locally patching source/uchime_src/makefil

Help: mothur: ftbfs with GCC-11

2021-10-21 Thread Andreas Tille
Control: tags -1 help Hi, I've solved one gcc-11 issue that was mentioned in this bug report but now there are other gcc-11 issues that go beyond my C++ knowledge: ... g++ -g -O2 -ffile-prefix-map=/build/mothur-1.46.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -p