Re: [RFS] vsearch 2.25.2-3 arm64 port (Was: Some q2 friends are still not in testing)

2021-02-12 Thread Graham Inggs
Hi Étienne On Sat, 13 Feb 2021 at 01:24, Étienne Mollier wrote: > > 2. port vsearch on arm64. > > Good news, this option turns out to work out of the box! :) Thanks for testing this! > Assuming this kind of change is welcome in Soft Freeze, would it > be possible to do a sponsored upload to e

Re: Failed build for seqan2 on i386

2021-02-12 Thread Andreas Tille
Hi Aaron, On Fri, Feb 12, 2021 at 04:56:20PM -0500, Aaron M. Ucko wrote: > Andreas Tille writes: > > > But other 32bit architectures like armel and armhf are passing[2]. So I > > fail to see why exactly i386 is failing. Is this possibly an effect of > > bug #917851? > > Probably not; dropping

[RFS] vsearch 2.25.2-3 arm64 port (Was: Some q2 friends are still not in testing)

2021-02-12 Thread Étienne Mollier
Hi again, Étienne Mollier, on 2021-02-12 22:47:56 +0100: > 2. port vsearch on arm64. Good news, this option turns out to work out of the box! :) Assuming this kind of change is welcome in Soft Freeze, would it be possible to do a sponsored upload to enable vsearch on arm64? https://sa

Re: [RFS] drop-seq

2021-02-12 Thread tony mancill
On Fri, Feb 12, 2021 at 10:57:01PM +0100, Pierre Gruet wrote: > dcut dm --uid "Pierre Gruet" --allow drop-seq Hi Pierre, dcut command applied. Cheers, tony signature.asc Description: PGP signature

[RFS] drop-seq

2021-02-12 Thread Pierre Gruet
Hi, I worked on drop-seq to correct its RC bug and add some minor improvements. Would you mind reviewing or giving me DM rights? dcut dm --uid "Pierre Gruet" --allow drop-seq Many thanks, Pierre

Re: Failed build for seqan2 on i386

2021-02-12 Thread Aaron M. Ucko
Andreas Tille writes: > But other 32bit architectures like armel and armhf are passing[2]. So I > fail to see why exactly i386 is failing. Is this possibly an effect of > bug #917851? Probably not; dropping the bug to a Bcc. Experimentation in an i386 chroot reveals the problem to be specific

Re: Some q2 friends are still not in testing (Was: Mark q2-* regressions on armhf and i386)

2021-02-12 Thread Étienne Mollier
Hi Nilesh, Nilesh Patra, on 2021-02-13 02:05:47 +0530: > Looks like majority of the q2-* migrated to bullseye. However, > q2-quality-control and q2-feature-classifier haven't. > The reason is at the tracker. > > Please consider uploading the fix and maybe we could request testing > migration. Ar

Some q2 friends are still not in testing (Was: Mark q2-* regressions on armhf and i386)

2021-02-12 Thread Nilesh Patra
Hi Étienne Looks like majority of the q2-* migrated to bullseye. However, q2-quality-control and q2-feature-classifier haven't. The reason is at the tracker. Please consider uploading the fix and maybe we could request testing migration. PS: I'd have tried tracking and uploading a fix myself but

Re: Bug in jmalloc2 prevents migration of drmaa and thus biomaj3

2021-02-12 Thread Andreas Tille
Hi Juhani, On Fri, Feb 12, 2021 at 09:11:13PM +0200, Juhani Numminen wrote: > > As the soft freeze has begun, drmaa will not be allowed to > re-enter testing. As far as I know manual progression to testing can be approached by filing a bug report to release.debian.org, but ... > We could remov

Re: Bug in jmalloc2 prevents migration of drmaa and thus biomaj3

2021-02-12 Thread Juhani Numminen
Andreas Tille kirjoitti 12.2.2021 klo 11.09: > I'd like to draw your attention to bug #951704 which finally > prevents the migration of biomaj3[1]. As the soft freeze has begun, drmaa will not be allowed to re-enter testing. We could remove the python3-drmaa dependency relationship from python3-b

Re: Failed build for seqan2 on i386

2021-02-12 Thread Andreas Tille
On Fri, Feb 12, 2021 at 04:30:48PM +0500, Andrey Rahmatullin wrote: > On Fri, Feb 12, 2021 at 11:21:38AM +0100, Hilmar Preuße wrote: > > > But other 32bit architectures like armel and armhf are passing[2]. So I > > > fail to see why exactly i386 is failing. Is this possibly an effect of > > > bug

Re: Validating debian/upstream/metadata for debian-med projects

2021-02-12 Thread Andrius Merkys
Hi Étienne, On 2021-02-11 20:04, Étienne Mollier wrote: > Thanks from me as well! I landed in the industrial world before > having a chance to start a PhD thesis; publication nomenclatures > are kind of foreign to me. I really welcome automated tools to > point me to my mistakes in that matter.

Re: Failed build for seqan2 on i386

2021-02-12 Thread Andrey Rahmatullin
On Fri, Feb 12, 2021 at 11:21:38AM +0100, Hilmar Preuße wrote: > > > You can't adjust anything to get more than 4GB virtual memory on 32-bit > > > architectures. > > > You can try adjusting compilation/linking parameters to make the > > > compiler/linker use less memory though (not sure if the sugg

Re: Failed build for seqan2 on i386

2021-02-12 Thread Andreas Tille
Hi Hilmar, On Fri, Feb 12, 2021 at 11:21:38AM +0100, Hilmar Preuße wrote: > > But other 32bit architectures like armel and armhf are passing[2]. So I > > fail to see why exactly i386 is failing. Is this possibly an effect of > > bug #917851? > > > Maybe the memory of the whole builder is exhaus

Re: Failed build for seqan2 on i386

2021-02-12 Thread Hilmar Preuße
Am 12.02.2021 um 11:01 teilte Andreas Tille mit: On Fri, Feb 12, 2021 at 02:39:25PM +0500, Andrey Rahmatullin wrote: Hi, You can't adjust anything to get more than 4GB virtual memory on 32-bit architectures. You can try adjusting compilation/linking parameters to make the compiler/linker use

Re: Failed build for seqan2 on i386

2021-02-12 Thread Andreas Tille
Hi, On Fri, Feb 12, 2021 at 02:39:25PM +0500, Andrey Rahmatullin wrote: > > I wonder whether this could be simply solved by adjusting the hardware / > > emulation parameters of the according autobuilder. > > > > Am I missing something? > You can't adjust anything to get more than 4GB virtual memo

Re: Failed build for seqan2 on i386

2021-02-12 Thread Andrey Rahmatullin
On Fri, Feb 12, 2021 at 10:17:06AM +0100, Andreas Tille wrote: > in the build log[1] I found > >virtual memory exhausted: Operation not permitted > > I wonder whether this could be simply solved by adjusting the hardware / > emulation parameters of the according autobuilder. > > Am I missing

Failed build for seqan2 on i386

2021-02-12 Thread Andreas Tille
Hi, in the build log[1] I found virtual memory exhausted: Operation not permitted I wonder whether this could be simply solved by adjusting the hardware / emulation parameters of the according autobuilder. Am I missing something? Kind regards Andreas. [1] https://buildd.debian.org/

Bug in jmalloc2 prevents migration of drmaa and thus biomaj3

2021-02-12 Thread Andreas Tille
Hi Olivier, I'd like to draw your attention to bug #951704 which finally prevents the migration of biomaj3[1]. Kind regards Andreas. [1] https://qa.debian.org/excuses.php?package=biomaj3 -- http://fam-tille.de