Re: can you please put ARACHNE on the task list

2011-04-05 Thread George Marselis
Oh. right :) yes, you are correct. never committed anything to git. On Tue, Apr 5, 2011 at 9:53 PM, Andreas Tille wrote: > On Tue, Apr 05, 2011 at 09:47:39PM +0300, George Marselis wrote: >> i thought i already did have permissions, from my attempt with Mira. >> Let me check again. > > Right - yo

Re: gbrowse: auto tests added

2011-04-05 Thread Charles Plessy
Le Sun, Apr 03, 2011 at 09:12:58AM +0200, Olivier Sallou a écrit : > > as requested by Charles, I added auto test step to rules file . > > Tests are run in non-interactive way. Thanks a lot. I had a little time to make more tests. Strangely, the package is not installable twice in a row. It

Re: can you please put ARACHNE on the task list

2011-04-05 Thread Andreas Tille
On Tue, Apr 05, 2011 at 09:47:39PM +0300, George Marselis wrote: > i thought i already did have permissions, from my attempt with Mira. > Let me check again. Right - you just are member of Debian Med project. However, the SVN log of mira does not contain your name. Are you sure that you commited

Re: can you please put ARACHNE on the task list

2011-04-05 Thread George Marselis
i thought i already did have permissions, from my attempt with Mira. Let me check again. On Tue, Apr 5, 2011 at 6:29 PM, Andreas Tille wrote: > On Tue, Apr 05, 2011 at 05:30:42PM +0300, George Marselis wrote: >> http://www.broadinstitute.org/crd/wiki/index.php/Arachne#Download_Arachne >> >> can y

Re: velvet -> MetaVelvet ?

2011-04-05 Thread George Marselis
Um beginner, reporting in! On Tue, Apr 5, 2011 at 6:23 PM, Andreas Tille wrote: > On Tue, Apr 05, 2011 at 03:24:28PM +0100, Maximilian Haussler wrote: >> Isn't the real upstream of meta-velvet here: >> https://github.com/hacchy/MetaVelvet >> >> Based on: >> http://metavelvet.dna.bio.keio.ac.jp/in

Re: can you please put ARACHNE on the task list

2011-04-05 Thread Andreas Tille
On Tue, Apr 05, 2011 at 05:30:42PM +0300, George Marselis wrote: > http://www.broadinstitute.org/crd/wiki/index.php/Arachne#Download_Arachne > > can you list this program, as wel, please? Just added. Will be presented at the task page after next cron run. Thanks for the tip Andreas. PS: E

Re: velvet -> MetaVelvet ?

2011-04-05 Thread Andreas Tille
On Tue, Apr 05, 2011 at 03:24:28PM +0100, Maximilian Haussler wrote: > Isn't the real upstream of meta-velvet here: > https://github.com/hacchy/MetaVelvet > > Based on: > http://metavelvet.dna.bio.keio.ac.jp/index.html Ahh, thanks for the hint. > Looks like Daniel has a copy of meta-velvet insi

can you please put ARACHNE on the task list

2011-04-05 Thread George Marselis
http://www.broadinstitute.org/crd/wiki/index.php/Arachne#Download_Arachne can you list this program, as wel, please? -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/ba

Re: velvet -> MetaVelvet ?

2011-04-05 Thread Maximilian Haussler
Hi Andreas, Isn't the real upstream of meta-velvet here: https://github.com/hacchy/MetaVelvet Based on: http://metavelvet.dna.bio.keio.ac.jp/index.html Looks like Daniel has a copy of meta-velvet inside velvet now, but I guess that the github site has the newest version... cheers Max On Tue,

velvet -> MetaVelvet ?

2011-04-05 Thread Andreas Tille
Hi, I just commited packaging stuff for the new velvet version in to SVN. However, I'm hesitating to upload because there is basically a copy of velvet code with several changes inside the directory contrib/MetaVelvet-v0.3.1 While it seems cheap to compile this code as well and ship it in a p