cgview.jar does not find class from batik-util

2018-08-20 Thread Andreas Tille
Hi, I checked package cgview[1] since it is needed for some other package (to be packaged). When I try $ /usr/bin/cgview Error: Unable to initialize main class ca.ualberta.stothard.cgview.CgviewIO Caused by: java.lang.NoClassDefFoundError: org/apache/batik/util/XMLConstants The class that

Bug#906772: RM: wagon2 -- ROM; No longer used, replaced by src:wagon

2018-08-20 Thread Emmanuel Bourg
Package: ftp.debian.org Severity: normal Hi, Please remove the wagon2 package, it was introduced to ease the transition to Maven 3 but is no longer used now. Thank you, Emmanuel Bourg

Changes in alter-sequence-alignment break build of jmodeltest (Was: Bug#906371: jmodeltest: FTBFS in buster/sid)

2018-08-20 Thread Andreas Tille
Hi, On Mon, Aug 20, 2018 at 12:39:21AM +0200, Emmanuel Bourg wrote: > > do you have any hint how to deal with this issue? > > The actual error is: > > [javac] > /build/1st/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/ModelTestService.java:28: > error: package parser does n