Re: Problems understanding maven rules to package qualimap

2015-11-19 Thread Andreas Tille
Hi Emmanuel, On Mon, Nov 16, 2015 at 05:49:58PM +0100, Emmanuel Bourg wrote: > Le 16/11/2015 17:22, Andreas Tille a écrit : > > > While I know that these classes are part of BioJava I fail to understand > > how to craft these magical regexps maven wants me to provide. > > biojava probably doesn'

Re: Problems understanding maven rules to package qualimap

2015-11-16 Thread Emmanuel Bourg
Le 16/11/2015 17:22, Andreas Tille a écrit : > While I know that these classes are part of BioJava I fail to understand > how to craft these magical regexps maven wants me to provide. biojava probably doesn't install the Maven artifacts , that's why mh_make can't find bioinfo-ngs. If it does inst

Problems understanding maven rules to package qualimap

2015-11-16 Thread Andreas Tille
Hi, I intend to package qualimap[1]. When trying mh_make I'm running into questions like: In pom.xml: This dependency cannot be found in the Debian Maven repository. Ignore this dependency? org.bioinfo:bioinfo-ngs:jar:0.1.0 [y/N] > n > dpkg --search /usr/share/maven-repo/org/bioinfo/bioinfo-n