Hi.
On 13/03/2011 16:03, Eric Lavarde wrote:
> The reality is that, invoked with -jar, java ignores any classpath from
> the command line and uses only the one from the manifest, which explains
> the differences in behavior your are experiencing.
I considered this option, which partially solves t
Hi,
On 12/03/11 12:13, Giovanni Mascellani wrote:
Third try: if I explicitly set classpath with this line
java -cp
/usr/share/beast-mcmc/lib/beast.jar:/usr/share/java/jam.jar:/usr/share/java/jdom1.jar:/usr/share/java/jebl.jar:/usr/share/java/commons-math.jar
dr.app.beast.BeastMain
then the pro
Hi Andreas.
On 28/02/2011 22:51, Andreas Tille wrote:
> Hi,
>
> I would like to refresh my question about the problem I mentioned.
> Here again a short summary: At
>
>http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/
>
> you can find a source package of beast-mcmc. All prec
Hi,
I would like to refresh my question about the problem I mentioned.
Here again a short summary: At
http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/
you can find a source package of beast-mcmc. All preconditions which
are not available in Debian are at
http://people.de
On Fri, Feb 18, 2011 at 04:37:53PM +0100, Vincent Fourmond wrote:
>
> This could mean that the version of jam in NEW was built without
> support for one of its components (this can happen sometimes with
> complex ant files), or that these components were split somehow. Where
> can I get the pack
On Wed, Feb 16, 2011 at 10:59 PM, Andreas Tille wrote:
> when dealing with phylogenie related programs I found several Java based
> programs up for packaging. I've got FigTree close to ready - just one
> JAR (iText PDF library) is up for isolation of binary JAR into separate
> package (will be to
On Fri, Feb 18, 2011 at 09:31:09AM -0500, Scott Howard wrote:
> > ... but failed. Any idea why this does not work?
>
> Is it failing when you try to execute the .jar? (Saying can't find jam.jar?)
Yes.
> I don't know the insides of jh_manifest and dh7 style commands, but I
> usually see debian/
On Fri, Feb 18, 2011 at 02:06:54PM +0100, Niels Thykier wrote:
>
> jh_manifest follows the symlink and updates the original jar file rather
> than creating a copy of the original jar file and updating that copy.
>
> That being said; java generally does not support multiple purpose jars
> via the
> > jh_manifest
> > Syntax error in debian/beast-mcmc.manifest
> > (/usr/share/beast-mcmc/beast.jar) - perhaps you are missing a ":"?
> > jh_manifest: Unknown line in debian/beast-mcmc.manifest
> > (/usr/share/beast-mcmc/beast.jar),
>
> It looks like you're missing a : after the jar name (e.g
On Thu, Feb 17, 2011 at 3:49 AM, Andreas Tille wrote:
> The problem I had is that beast-mcmc contains more than one executables
> with more than one JAR files. Some executables are using a common JAR
> file with different main classes. As far as I have seen this case
> is not covered by the tuto
On Wed, Feb 16, 2011 at 06:12:53PM -0500, Scott Howard wrote:
> I haven't built the package, but the debian/__beast-mcmc.manifest__
> doesn't appear to be in javahelper manifest form.
No it is definitely not - it was just a reminder for myself what
classes need to be called. The __*__ made sure t
On Wed, Feb 16, 2011 at 4:59 PM, Andreas Tille wrote:
> with debian/figtree.manifest which was determining the CLASSPATH for the
> executable jar. I considered this way as quite useful and would like to
> try it for beast-mcmc as well (even if it is no real request - any other
> way would be welc
Hi,
when dealing with phylogenie related programs I found several Java based
programs up for packaging. I've got FigTree close to ready - just one
JAR (iText PDF library) is up for isolation of binary JAR into separate
package (will be topic of another mail soonish). For the package
beast-mcmc[1
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