Re: Help needed to upgrade cdk

2019-12-31 Thread merkys
Hi Egon, On 2019-12-31 16:02, Egon Willighagen wrote: > I saw that CDK 2.3 is now in unstable! Great news! Many thanks for > your time during the BioHackathon, and others for their effort to make > this happen. Very much appreciated. Yes, it's finally in! :) Hope to get the CDK's depiction part w

Re: Help needed to upgrade cdk

2019-12-31 Thread Egon Willighagen
Hi Andreas, and other Debian developers, I saw that CDK 2.3 is now in unstable! Great news! Many thanks for your time during the BioHackathon, and others for their effort to make this happen. Very much appreciated. Egon On Tue, Nov 19, 2019 at 6:40 PM Andreas Tille wrote: > Hi, > > I've sat t

Re: Help needed to upgrade cdk

2019-11-21 Thread merkys
Hi Egon, On 2019-11-21 11:27, Egon Willighagen wrote: > Awesome! Plz let me know if I can answer any questions around > dependencies, or impact of missing dependencies. I have made it to a successful cdk build today! I had to exclude three artifacts due to compilation problems (mostly dependenci

Re: Help needed to upgrade cdk

2019-11-21 Thread Egon Willighagen
Awesome! Plz let me know if I can answer any questions around dependencies, or impact of missing dependencies. Egon On Wed, Nov 20, 2019 at 9:35 PM Andrius Merkys wrote: > Hi Andreas, > > On Wed, 20 Nov 2019, 22:19 Andreas Tille, wrote: > >> I have no idea what restrictions the lack of cmlxom

Re: Help needed to upgrade cdk

2019-11-20 Thread Andreas Tille
On Wed, Nov 20, 2019 at 10:35:11PM +0200, Andrius Merkys wrote: > > I have no idea what restrictions the lack of cmlxom might imply. > > I have packaged and uploaded cmlxom today. Will do so with the rest of > dependencies. > > > Would you take over and upload your changes? If not please push an

Re: Help needed to upgrade cdk

2019-11-20 Thread Andrius Merkys
Hi Andreas, On Wed, 20 Nov 2019, 22:19 Andreas Tille, wrote: > I have no idea what restrictions the lack of cmlxom might imply. > I have packaged and uploaded cmlxom today. Will do so with the rest of dependencies. Would you take over and upload your changes? If not please push and > let me k

Re: Help needed to upgrade cdk

2019-11-20 Thread Andreas Tille
Hi Andrius, On Wed, Nov 20, 2019 at 10:56:52AM +0200, mer...@debian.org wrote: > I have managed to get around the most of the build problems. However, a > lot of the artifacts depend (transitively) on org.xml-cml.cmlxom, which > is not packaged yet. For the time being I can skip these artifacts, b

Re: Help needed to upgrade cdk

2019-11-20 Thread merkys
Hi, I have managed to get around the most of the build problems. However, a lot of the artifacts depend (transitively) on org.xml-cml.cmlxom, which is not packaged yet. For the time being I can skip these artifacts, but in the long run it would be great to have cmlxom packaged. Best, Andrius

Re: Help needed to upgrade cdk

2019-11-19 Thread merkys
Hi, On 2019-11-19 19:40, Andreas Tille wrote: > I've sat together with Egon Willighagen who is member of CDK upstream > team to update the cdk package[1]. So far the switch from ant to maven > seems to have basically succeeded. However, for some reason it does not > build modules in the correct

Re: Help needed to upgrade cdk

2019-11-19 Thread Markus Koschany
Am 19.11.19 um 18:40 schrieb Andreas Tille: > Hi, > > I've sat together with Egon Willighagen who is member of CDK upstream > team to update the cdk package[1]. So far the switch from ant to maven > seems to have basically succeeded. However, for some reason it does not > build modules in the co

Help needed to upgrade cdk

2019-11-19 Thread Andreas Tille
Hi, I've sat together with Egon Willighagen who is member of CDK upstream team to update the cdk package[1]. So far the switch from ant to maven seems to have basically succeeded. However, for some reason it does not build modules in the correct sequence and thus we are running into: [INFO] cd