Re: Help needed for calling Java class from R

2020-04-15 Thread Andreas Tille
Hi again, On Tue, Apr 14, 2020 at 10:50:28PM +0200, Andreas Tille wrote: > 1 Test Suite : > rcdk rcdk Unit Tests - 31 test functions, 31 errors, 0 failures > ERROR in test.charges: Error in > .jnew("org/openscience/cdk/smiles/SmilesParser", get.chem.object.builder()) : > java.lang.NoClassDefF

Re: Help needed for calling Java class from R

2020-04-14 Thread Andreas Tille
Hi Florian, On Tue, Apr 14, 2020 at 08:49:44PM +0200, Florian Weimer wrote: > > Meh. Does R have exceptions? It would be nice to translate the > underlying exception from > > if (clnam) > cls = findClass(env, clnam, oClassLoader); > else > cls = objectClass(env,o); > if (!cls) >

Re: Help needed for calling Java class from R

2020-04-14 Thread Florian Weimer
* Andreas Tille: > On Tue, Apr 14, 2020 at 06:52:56PM +0200, Florian Weimer wrote: >> * Andreas Tille: >> > ERROR: loading failed >> > * removing >> > '/build/r-cran-rcdk-3.5.0/debian/r-cran-rcdk/usr/lib/R/site-library/rcdk' >> > dh_auto_install: error: R CMD INSTALL -l >> > /build/r-cran-rcdk-3

Re: Help needed for calling Java class from R

2020-04-14 Thread Andreas Tille
On Tue, Apr 14, 2020 at 06:52:56PM +0200, Florian Weimer wrote: > * Andreas Tille: > > ERROR: loading failed > > * removing > > '/build/r-cran-rcdk-3.5.0/debian/r-cran-rcdk/usr/lib/R/site-library/rcdk' > > dh_auto_install: error: R CMD INSTALL -l > > /build/r-cran-rcdk-3.5.0/debian/r-cran-rcdk/us

Re: Help needed for calling Java class from R

2020-04-14 Thread Florian Weimer
* Andreas Tille: > Hi, > > in the COVID-19 packaging effort I need r-cran-rcdk as a predependency. > I have injected it into r-pkg-team Git[1]. It is using the rjava interface > and depends from r-cran-rcdklibs (which has a dependency from libcdk-java). > When I try to build I get: > > > ** insta

Help needed for calling Java class from R

2020-04-14 Thread Andreas Tille
Hi, in the COVID-19 packaging effort I need r-cran-rcdk as a predependency. I have injected it into r-pkg-team Git[1]. It is using the rjava interface and depends from r-cran-rcdklibs (which has a dependency from libcdk-java). When I try to build I get: ** installing vignettes ** testing if ins