Re: Help needed for gatk

2016-01-29 Thread Andreas Tille
Hi Andrew, On Fri, Jan 29, 2016 at 10:44:07AM -0800, Andrew Schurman wrote: > > Based on the history of the repo, it appears to be the same project by > the same author. I don't think it's too much of a stretch to use this > new repo. If you want to be extra cautious, you could compare source of

Re: Help needed for gatk

2016-01-29 Thread Andrew Schurman
On Thu, 2016-01-28 at 16:26 +0100, Andreas Tille wrote: > As far as I understand its renamed by the same author. You're right. I didn't realize this. > I perfectly agree - but I have no idea how to find the according > source > code.  I feel a bit unsafe to checkout the new repository and > chec

Re: Trying to free f2c

2016-01-29 Thread Andreas Tille
On Fri, Jan 29, 2016 at 06:20:27PM +0100, Andreas Tille wrote: > > > > Sun did that for us 11 years ago in Java 5 ;) Try this replacement: > > > > s = String.format(fmtstr, o); > > What do I need to import to access this? Forget this question - I've found --- a/util/Makefile +++ b/util/Mak

Re: Trying to free f2c

2016-01-29 Thread Fernando C. Estrada
Hi Andreas, El Vie, 29 de Ene de 16, a las 11:20 AM, Andreas Tille escribió: > On Fri, Jan 29, 2016 at 04:58:48PM +0100, Emmanuel Bourg wrote: > > Le 29/01/2016 16:44, Andreas Tille a écrit : > > > > > I wonder whether some Java programmer could provide some simple > > > replacement. > > > > Sun

Re: Trying to free f2c

2016-01-29 Thread Andreas Tille
On Fri, Jan 29, 2016 at 04:58:48PM +0100, Emmanuel Bourg wrote: > Le 29/01/2016 16:44, Andreas Tille a écrit : > > > I wonder whether some Java programmer could provide some simple > > replacement. > > Sun did that for us 11 years ago in Java 5 ;) Try this replacement: > > s = String.format(

Re: About Jenkins in Debian

2016-01-29 Thread Emmanuel Bourg
Hi all, Since there is no consensus to maintain a subset of Jenkins I'll proceed with its removal (#811522). I'll also request the removal of the Jenkins specific libraries. Here is the list of packages I've identified, let me know if there are others: access-modifier-checker bytecode-compati

Re: Trying to free f2c

2016-01-29 Thread Emmanuel Bourg
Le 29/01/2016 16:44, Andreas Tille a écrit : > I wonder whether some Java programmer could provide some simple > replacement. Sun did that for us 11 years ago in Java 5 ;) Try this replacement: s = String.format(fmtstr, o); Emmanuel Bourg

Re: Trying to free f2c

2016-01-29 Thread Andreas Tille
Hi again, On Fri, Jan 29, 2016 at 01:44:14PM +0100, Andreas Tille wrote: > > > > I got a quick look and you might be right, the goto_trans stuff seems > > optional. What happens if you don't install javab in the f2j package? > > I did a quick test with a local build. I can easily build > libnet

Re: Trying to free f2c

2016-01-29 Thread Andreas Tille
Hi Emmanuel, On Fri, Jan 29, 2016 at 11:54:16AM +0100, Emmanuel Bourg wrote: > > So my question is: Do we possibly rely here on a non-free tool that > > is really not needed and we could simply drop it? > > I got a quick look and you might be right, the goto_trans stuff seems > optional. What ha

Bug#813091: RM: maven2 -- ROM; replaced by maven

2016-01-29 Thread Emmanuel Bourg
Package: ftp.debian.org Severity: normal Hi, Please remove the maven2 package, it has been replaced with maven and is no longer used. Thank you, Emmanuel Bourg

Re: Trying to free f2c

2016-01-29 Thread Emmanuel Bourg
Le 29/01/2016 11:19, Andreas Tille a écrit : > So my question is: Do we possibly rely here on a non-free tool that > is really not needed and we could simply drop it? I got a quick look and you might be right, the goto_trans stuff seems optional. What happens if you don't install javab in the f2

Trying to free f2c

2016-01-29 Thread Andreas Tille
Hi, since I'm really bored by the non-free f2c package which throws a certain number of packages into contrib I checked again what we could do. It seems the main reason why f2c is non-free is that it includes goto_trans (non-commercial use, no fee). The code describes itself as JAVAB -- A proto

Re: Need help to upgrade libnetlib-java package

2016-01-29 Thread Andreas Tille
Hi Emmanuel, On Thu, Jan 28, 2016 at 11:44:32PM +0100, Emmanuel Bourg wrote: > Le 28/01/2016 22:32, Andreas Tille a écrit : > > > Did I miss some declaration of the version? I decided to keep 1.1 > > since that fits the download version better than 1.2-SNAPSHOT. > > I pushed some tweaks, but at