Re: Need help to upgrade libnetlib-java package

2016-01-28 Thread Emmanuel Bourg
Le 28/01/2016 22:32, Andreas Tille a écrit : > Did I miss some declaration of the version? I decided to keep 1.1 > since that fits the download version better than 1.2-SNAPSHOT. I pushed some tweaks, but at this point it's blocked by the missing artifacts in liblombok-java. Emmanuel Bourg

Need help to upgrade libnetlib-java package

2016-01-28 Thread Andreas Tille
Hi, I'm in the process to upgrade libnetlib-java and when doing so moving it from Debian Med team to Debian Java team. The build system has switched from ant to maven. I've commited my current work to pkg-java git[1]. The build ends currently up with ... dh_auto_configure -O--buildsystem=m

Re: Need help to upgrade libnetlib-java package

2016-01-28 Thread Andreas Tille
Hi Emmanuel, On Thu, Jan 28, 2016 at 09:56:34PM +0100, Emmanuel Bourg wrote: > Le 28/01/2016 20:55, Andreas Tille a écrit : > > > why com.github.fommil.netlib POMs can not be accessed (isn't this > > in the very same source tree?) > > Yes, but not the same version. core/pom.xml refers to the par

Re: Need help to upgrade libmtj-java package

2016-01-28 Thread Emmanuel Bourg
Le 28/01/2016 21:40, Andreas Tille a écrit : > Since these are only warnings I wonder whether these are needed at all. You can ignore them. The deploy plugin is for uploading the jars to a Maven repository, and the site plugin generates a web site with various reports. We don't use them when buil

Re: Need help to upgrade libnetlib-java package

2016-01-28 Thread Emmanuel Bourg
Le 28/01/2016 20:55, Andreas Tille a écrit : > why com.github.fommil.netlib POMs can not be accessed (isn't this > in the very same source tree?) Yes, but not the same version. core/pom.xml refers to the parent pom com.github.fommil.netlib:parent:1.1, but the parent pom.xml has the version 1.2-SN

Need help to upgrade libmtj-java package

2016-01-28 Thread Andreas Tille
Hi, I'm in the process to upgrade libmtj-java and when doing so moving it from Debian Med team to Debian Java team. The build system has switched from ant to maven. I've commited my current work to pkg-java git[1]. What is currently confusing me that possibly some versions of Build-Dependencie

Packaging maven-scala-plugin (Was: Help needed for gatk)

2016-01-28 Thread Andreas Tille
On Wed, Jan 27, 2016 at 02:52:55PM -0800, Andrew Schurman wrote: > > Just to make sure I'm > > heading in the right direction: > > > >   scala: https://github.com/davidB/scala-maven-plugin > >    (this seems to be outdated: http://scala-tools.org/mvnsites/maven- > > scala-plugin/) > > The one fro

Re: Help needed for gatk

2016-01-28 Thread Andreas Tille
Hi Andrew, On Wed, Jan 27, 2016 at 02:52:55PM -0800, Andrew Schurman wrote: > On Wed, 2016-01-27 at 15:08 +0100, Andreas Tille wrote: > > Reading "compile" and "link" would tell me > > that these are not needed only for testing, right? > > Don't confused with . Goals are named subroutines from >