Re: maven-debian-helper to maven3

2015-11-16 Thread Andrew Schurman
On Fri, 2015-11-13 at 16:40 +0100, Emmanuel Bourg wrote: > I've eventually merged your changes [1] and uploaded maven-debian > -helper > 2.0 to experimental. Awesome! Good to hear we are finally moving on from Maven 2. > I encountered some issues with the bootstrapping > and I had to revert back

Re: Problems understanding maven rules to package qualimap

2015-11-16 Thread Emmanuel Bourg
Le 16/11/2015 17:22, Andreas Tille a écrit : > While I know that these classes are part of BioJava I fail to understand > how to craft these magical regexps maven wants me to provide. biojava probably doesn't install the Maven artifacts , that's why mh_make can't find bioinfo-ngs. If it does inst

Problems understanding maven rules to package qualimap

2015-11-16 Thread Andreas Tille
Hi, I intend to package qualimap[1]. When trying mh_make I'm running into questions like: In pom.xml: This dependency cannot be found in the Debian Maven repository. Ignore this dependency? org.bioinfo:bioinfo-ngs:jar:0.1.0 [y/N] > n > dpkg --search /usr/share/maven-repo/org/bioinfo/bioinfo-n

Re: Backporting gradle or fixing ant build.xml for libejml-java

2015-11-16 Thread Emmanuel Bourg
Le 16/11/2015 16:45, Andreas Tille a écrit : > Unknown command-line option '--console'. Hi Andreas, I guess you backported gradle-debian-helper to Jessie too? In this case just remove the --console parameter in gradle.pm [1] and it will work better. Emmanuel Bourg [1] https://sources.debian.ne

Backporting gradle or fixing ant build.xml for libejml-java

2015-11-16 Thread Andreas Tille
Hi, I would like to package qualimap[1] for the Debian Med team (questions for this one will follow). There is a missing dependency libejml-java which i prepared in pkg-java Git[2]. Upstream README.md says: Gradle is the official build environment for EJML. and I succeeded building the packa