Re: Help needed to upgrade ncbi-igblast

2023-01-20 Thread Aaron M. Ucko
u...@debian.org (Aaron M. Ucko) writes: > Will do, then. Pushed, along with one more build fix (to accommodate our ncbi-vdb installation layout fully) and two other tuneups to debian/rules. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | h

Re: Help needed to upgrade ncbi-igblast

2023-01-19 Thread Aaron M. Ucko
Nilesh Patra writes: > packages, which includes gcc. So unless the bug > report is very critical, the fix for the said bug _might not_ be > uploaded. Good point. :-/ > And so it may be a good idea to go ahead with the workaround. Will do, then. -- Aaron M. Ucko, KB1CJC (amu at

Re: Help needed to upgrade ncbi-igblast

2023-01-19 Thread Aaron M. Ucko
an upcoming gcc-12 upload will include a proper fix. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: [Debian-med-packaging] Bug#884795: Bug#884795: patman: FTBFS on x32: final link failed: Nonrepresentable section

2017-12-20 Thread Aaron M. Ucko
PPFLAGS (which is supposed to be for the C PreProcessor). It should properly consult both CPPFLAGS and CXXFLAGS, and distribute its own flags across these two variables as appropriate. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http:

Bug#792052: gcc-python-plugin: FTBFS: python3-dbg: not found

2015-07-10 Thread Aaron M. Ucko
Source: gcc-python-plugin Version: 0.14-1 Severity: serious Justification: fails to build from source Builds of gcc-python-plugin in minimal environments (notably, on the autobuilders) have been failing: make[1]: Entering directory '/«PKGBUILDDIR»/build-python3-dbg' Makefile:193: warning: ove

Bug#751891: gcc-4.9-source: versioned dependency blocks make-guile installation

2014-06-17 Thread Aaron M. Ucko
Package: gcc-4.9-source Version: 4.9.0-6 Severity: normal Could you please unversion gcc-4.9-source's dependency on make? It currently depends on make (>= 3.81). However, the version requirement is redundant (even oldstable had 3.81-8) and prevents installation of the new Guile-enabled make vari

Bug#710845: g++-4.6: mipsel executables built -Wl,-z,now -fPIE crash on startup

2013-06-02 Thread Aaron M. Ucko
Cc:ing debian-mips, then, as this is out of my league. -- Aaron Matthias Klose writes: > Control: tags -1 + moreinfo help > > Am 03.06.2013 00:31, schrieb Aaron M. Ucko: >> Package: g++-4.6 >> Version: 4.6.4-2 >> Severity: serious >> Justification: makes

Bug#710845: g++-4.6: mipsel executables built -Wl,-z,now -fPIE crash on startup

2013-06-02 Thread Aaron M. Ucko
Package: g++-4.6 Version: 4.6.4-2 Severity: serious Justification: makes other packages fail to build from source On mipsel, C++ executables built with -Wl,-z,now and -fPIE (per dpkg's customary hardening flags) crash on startup (jumping to NULL from __libc_start_main@plt), leading to #710807 and

Bug#710432: gdc-4.8: FTBFS on non-Linux: 'memicmp' was not declared in this scope

2013-05-30 Thread Aaron M. Ucko
Source: gdc-4.8 Version: 4.8.0-2 Severity: serious Justification: fails to build from source The hurd-i386 build of gdc-4.8 failed: ../../src/gcc/d/dfrontend/doc.c: In function 'int icmp(const char*, void*, size_t)': ../../src/gcc/d/dfrontend/doc.c:1706:44: error: 'memicmp' was not declared

Bug#673441: GCC crash while compiling on Sparc

2012-09-27 Thread Aaron M. Ucko
nning cc1plus. ncbi-blast+ will need a new upload soon anyway to address other bugs, so there's probably no point in requesting a give-back. Sorry to bother you! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a

Bug#533009: lib32ffi5: /emul/ia32-linux deprecated

2009-11-09 Thread Aaron M. Ucko
reopen 533009 notfixed 533009 3.0.7-2 thanks Although the lib32ffi* packages now require a "modern" libc6-i386, I have belatedly noticed that they continue to ship files under /emul/ia32-linux/usr/lib rather than /usr/lib32; could you please fix that? Thanks! -- Aaron M. Ucko, KB1C

Re: please rebuild libffi5's reverse dependencies on amd64

2008-05-24 Thread Aaron M. Ucko
e libpoppler3 transition proceeded to reveal a handful of misspecified dependencies (which I suppose I ought to report, as nobody else has yet AFAICT). -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/[EMAIL PROTECTED]

please rebuild libffi5's reverse dependencies on amd64

2008-05-14 Thread Aaron M. Ucko
-dev 3.0.x, albeit a broken version thereof. * AFAICT, the bug in question only affected amd64, as other potentially relevant architectures (including i386) already make proper use of the relevant predefined macros. Thanks! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Fin

Bug#480208: found 480208 in 3.0.5-1

2008-05-12 Thread Aaron M. Ucko
# Automatically generated email from bts, devscripts version 2.10.27 # Accidentally reported against my draft NMU; at any rate, please fix ASAP\! found 480208 3.0.5-1 -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#480208: libffi-dev: amd64 headers inconsistent with actual binaries

2008-05-08 Thread Aaron M. Ucko
Package: libffi-dev Version: 3.0.5-1.0 Severity: critical Justification: causes serious data loss Because all the builds (native and bi-/tri-arch) install headers into /usr/include, /usr/include/ffi.h may wind up failing to correspond to the actual architecture of interest. In particular, on amd6

Bug#473455: gobjc-4.3-multilib: depends on lib64objc2 on amd64

2008-03-30 Thread Aaron M. Ucko
Package: gobjc-4.3-multilib Version: 4.3.0-2 Severity: important The amd64 gobjc-4.3-multilib package currently depends on lib64objc2, which exists only on 32-bit architectures; could you please correct the dependency to lib32objc2? Thanks! -- System Information: Debian Release: lenny/sid APT

Bug#421309: gnat-4.1: please upload 4.1.2 to resync with gcc-4.1

2007-04-27 Thread Aaron M. Ucko
Package: gnat-4.1 Version: 4.1.1-22 Severity: grave Justification: renders package unusable (uninstallable) Could you please upload GNAT 4.1.2 to unstable ASAP? As it stands, cpp-4.1's conflict with gnat-4.1 (<= 4.1.1-22) makes gnat-4.1 uninstallable on systems that don't still have suitably old

Bug#348792: 64-bit unclean logic found in _Jv_ulp

2006-09-05 Thread Aaron M. Ucko
,7 @@ _DEFUN (ulp, (_x), double _x) { union double_union x, a; - register __Long L; + register int32_t L; x.d = _x; -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCRIBE, email to [EM

Bug#357062: closed by Matthias Klose <[EMAIL PROTECTED]> (Re: libstdc++6-4.0-dev: 32-bit includes missing on amd64 (no /u/i/c++/4.0/i486-linux-gnu))

2006-07-08 Thread Aaron M. Ucko
So they are; thanks. However, in the meantime, gcc-4.1 seems to have developed an identical bug, hence the reassignment and reopening. :-/ -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCRIBE,

Bug#357062: libstdc++6-4.0-dev: 32-bit includes missing on amd64 (no /u/i/c++/4.0/i486-linux-gnu)

2006-03-15 Thread Aaron M. Ucko
Package: libstdc++6-4.0-dev Version: 4.0.3-1 Severity: normal /usr/include/c++/4.0/i486-linux-gnu seems to have gone missing, breaking g++ -m32 (which zeroc-ice inappropriately uses, but that's a separate bug). Could you please restore it? Thanks! -- System Information: Debian Release: testing/

Bug#348792: Bug#327407: string-to-double conversion still fails (spins) on 1e-308

2006-02-06 Thread Aaron M. Ucko
Dave Beckett <[EMAIL PROTECTED]> writes: > ikvm 0.24.0.1-1 doesn't use gcj, it uses ecj and I've built it on amd64 > myself: Um, ecj-bootstrap specifically uses gij-4.0, which hits #348792. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL P

Bug#348792: string-to-double conversion still fails (spins) on 1e-308

2006-02-06 Thread Aaron M. Ucko
kvm's long-suffering amd64 build now tickles this when attempting to compile DoubleToString.java, so I'm reopening #327407 as well. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCR

Bug#348792: libgcj6: string-to-double conversion can throw NullPointerException

2006-01-19 Thread Aaron M. Ucko
.4&tr2=1.5&r1=text&r2=text&diff_format=u Could you please apply that patch? Thanks! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with

Bug#348792: libgcj6: string-to-double conversion can throw NullPointerException

2006-01-18 Thread Aaron M. Ucko
I've done a little more testing, with the following conclusions: - The bug is also present in some older libgcj versions, including in particular libgcj5 3.4.4-5 and libgcj6 4.0.2-6. - The bug appears to be absent in gcc-snapshot 20051124-1. -- Aaron M. Ucko, KB1CJC (amu at alum.mi

Bug#348792: libgcj6: string-to-double conversion can throw NullPointerException

2006-01-18 Thread Aaron M. Ucko
Package: libgcj6 Version: 4.0.2-7 Severity: important For some reason, attempting to convert decimal strings that correspond to numbers below a certain threshold (between 4.24374e-214 and 4.24375e-214) to doubles (which should have an appreciably wider range) ends up segfaulting within the guts of

Bug#336463: g++-4.0: FPE ICE on mipsen also affects fltk1.1

2005-11-05 Thread Aaron M. Ucko
Package: g++-4.0 Version: 4.0.2-3 Followup-For: Bug #336463 My latest upload of fltk1.1 (1.1.6-9) runs into identical lossage on mips and mipsel, on sources that did not change since before my previous upload (which built fine), so G++ definitely appears to be the culprit. Logs: http://buildd.de

Bug#313228: java-gcj-compat: lacks manpages, but tries to register them

2005-06-12 Thread Aaron M. Ucko
Package: java-gcj-compat Version: 1.0.28-5 Severity: important Despite not actually shipping a /usr/lib/jvm/java-gcj/man hierarchy, java-gcj-compat attempts to register its would-be contents via the alternatives system. Please either supply actual man pages per Policy 12.1, or else stop registeri

Bug#312741: libgcj6: misplaced conflicts on libgcj[45]-dev

2005-06-10 Thread Aaron M. Ucko
Matthias Klose <[EMAIL PROTECTED]> writes: > why do you think so? [EMAIL PROTECTED]:~ $ apt-cache show libgcj6 | grep -i conflicts Conflicts: libgcj5-dev, libgcj4-dev [EMAIL PROTECTED]:~ $ apt-cache show libgcj6-dev | grep -i conflicts [EMAIL PROTECTED]:~ -- Aaron M. Ucko, KB1CJ

Bug#312741: libgcj6: misplaced conflicts on libgcj[45]-dev

2005-06-09 Thread Aaron M. Ucko
Package: libgcj6 Severity: normal For some reason, it is libgcj6 rather than libgcj6-dev that conflicts with libgcj4-dev and libgcj5-dev. -- System Information: Debian Release: testing/unstable Architecture: amd64 (x86_64) Shell: /bin/sh linked to /bin/bash Kernel: Linux 2.6.11.9 Locale: LANG=en

Bug#236547: gcj-3.3: lost dependency on libgcj4-dev

2004-03-06 Thread Aaron M. Ucko
Package: gcj-3.3 Version: 1:3.3.3-2 Severity: important Tags: sid Hello again. I have another lost dependency to report, this time courtesy of aptitude: gcj-3.3 seems to have stopped depending on libgcj4-dev between 3.3.3-1 and 3.3.3-2. -- System Information: Debian Release: testing/unstable A

Bug#234986: lost dependency on gcj-3.3

2004-02-26 Thread Aaron M. Ucko
Package: gcj Version: 4:3.3.3-1 Severity: grave Tags: sid Justification: renders package unusable In adding the dependency on gij, you seem to have lost the key dependency on gcj-3.3. Please restore it. -- System Information: Debian Release: testing/unstable APT prefers unstable APT policy:

Bug#196271: g++-3.3: dangling man page symlink

2003-06-05 Thread Aaron M . Ucko
Package: g++-3.3 Version: 1:3.3-3 Severity: minor [EMAIL PROTECTED] (Cron Daemon) writes: > mandb: warning: /usr/share/man/man1/i386-linux-g++-3.3.1 is a dangling symlink AFAICT, this is because the actual man page is g++-3.3.1.gz; please append .gz to the new symlink's name and target. -- Syst

Bug#179128: libstdc++5-dev: depends on libc12-dev, which only NetBSD has

2003-01-30 Thread Aaron M. Ucko
Package: libstdc++5-dev Version: 1:3.2.2-0pre7 Severity: grave Tags: sid Justification: renders package unusable libstdc++5-dev seems to have gained a dependency on libc12-dev, which AFAICT only exists on Debian GNU/NetBSD; could you please conditionalize it accordingly? Likewise for libgcj3-dev

Bug#137296: cpp: where have all the files gone?

2002-03-07 Thread Aaron M. Ucko
Package: cpp Version: 2:2.95.4-12 Severity: important The cpp package seems to be empty, breaking xrdb and anything else which expects to find /lib/cpp. Rebuilding with current debhelper (3.4.11; 3.4.10 should also be okay) resolves the problem. -- System Information Debian Release: 3.0 Architec

Bug#134005: gij-3.0: Should depend on libgcj2

2002-02-14 Thread Aaron M. Ucko
Package: gij-3.0 Version: 1:3.0.4-0pre020210 Severity: serious Justification: Policy 9.1 gij-3.0 links against libgcj.so.2, but does not depend on libgcj2. -- System Information Debian Release: 3.0 Architecture: i386 Kernel: Linux tux 2.4.17 #1 SMP Wed Dec 26 20:54:33 EST 2001 i686 Locale: LANG=e