Automatically detecting header-only libraries and setting Static-Built-Using automatically

2025-02-16 Thread Michael R. Crusoe
builtusing/dh_builtusing.1.en.html [3] https://www.debian.org/doc/debian-policy/ch-controlfields.html#debian-binary-package-control-files-debian-control Cheers, -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Re: Moving libdeflate from Debian-Med to a more appropriate team

2024-08-08 Thread Michael R. Crusoe
On 08/08/2024 07.02, nick black wrote: Michael R. Crusoe left as an exercise for the reader: Please create a new group on salsa and then we can move the repo[0] from the debian-med namespace. done: https://salsa.debian.org/deflate-team Thank you Nick, I've moved the libdeflate Salsa

Re: Moving libdeflate from Debian-Med to a more appropriate team

2024-08-07 Thread Michael R. Crusoe
On 06/08/2024 20.36, Andrea Pappacoda wrote: Il giorno mar 6 ago 2024 alle 11:32:15 -04:00:00, nick black ha scritto: I maintain it for Fedora, and would be happy to handle it in Debian; it's a dependency for one of my other packages (notcurses). Happy to enter into a team maintainership as w

Moving libdeflate from Debian-Med to a more appropriate team

2024-08-06 Thread Michael R. Crusoe
aging team. liblzma-dev (from xz-utils, 4381 reverse build-depend) has never been under team maintainership as far as I can tell. Thanks! [0] According to `build-rdeps --distribution unstable libdeflate-dev` -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Re: Videoconference Saturday 2020-10-17 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))

2020-10-17 Thread Michael R. Crusoe
On Fri, Oct 16, 2020 at 3:50 PM Andreas Tille wrote: > Hi, > > the video conferences of the Debian Med team have shifted to two > meetings per month now. Do enable different people joing we shift > weekdays by simply meeting on every > >2th and 17th > > of a month. So the next meeting is

Re: Videoconference today Friday 2020-06-12 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)))

2020-06-12 Thread Michael R. Crusoe
Thank you Andreas for announcing the meeting, and thanks to the attendees for their participation. Our meeting notes are at https://storm.debian.net/shared/6NfKT87njAmCg3tr_uhkE2Qp9SQhVxy8mwD1fQUzfMy On Fri, Jun 12, 2020 at 1:07 PM Andreas Tille wrote: > Hi, > > for those who would like to join

Bug#946611: ITP: golang-github-abeconnelly-autoio -- Golang io functions that provide standard scanner interfaces for compressed files.

2019-12-11 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Package: wnpp Severity: wishlist Owner: Michael R. Crusoe * Package name: golang-github-abeconnelly-autoio Version : 0.0~git20150803.989b7b0-1 Upstream Author : Abram Connelly * URL : https://github.com/abeconnelly/autoio * License

Bug#919681: ITP: sourmash -- tools for comparing DNA sequences with MinHash sketches

2019-01-18 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: sourmash Version : 2.0.0~a11 Upstream Author : C. Titus Brown , Luiz C. Irber, Jr * URL : http://sourmash.readthedocs.io/en/latest/ * License : BSD-3-Clause Programming Lang: Python, C+

Bug#919570: ITP: python-mypy-extensions -- Experimental type system extensions for mypy typechecker (Python 3)

2019-01-17 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-mypy-extensions Version : 0.4.1 Upstream Author : Jukka Lehtosalo and contributors * URL : https://github.com/python/mypy_extensions/ * License : Expat Programming Lang: Python D

Bug#915852: ITP: bagit -- Create and validate BagIt packages

2018-12-07 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: bagit Version : 1.7.0 Upstream Author : Ed Summers * URL : https://libraryofcongress.github.io/bagit-python/ * License : CC0 Programming Lang: Python Description : Create and valid

Bug#914928: ITP: python-typing-extensions -- Backported and Experimental Type Hints for Python

2018-11-28 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-typing-extensions Version : 3.6.6 Upstream Author : Guido van Rossum, Jukka Lehtosalo, Lukasz Langa, Michael Lee * URL : https://github.com/python/typing/blob/master/typing_extensions/REA

Bug#911076: ITP: libdeflate -- fast, whole-buffer DEFLATE-based compression and decompression

2018-10-15 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: libdeflate Version : 1.0 Upstream Author : Eric Biggers * URL : https://github.com/ebiggers/libdeflate * License : MIT Programming Lang: C Description : fast, whole-buffer DEFLATE-

Bug#890755: ITP: ctdconverter -- Convert CTD files into Galaxy tool and CWL CommandLineTool files

2018-02-18 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: ctdconverter Version : 2.0 Upstream Author : WorkflowConversion * URL : https://github.com/WorkflowConversion/CTDConverter/ * License : GPL-3 / Apache-2.0 Programming Lang: Python Descr

Bug#890752: ITP: ctdopts -- Gives your Python tools a CTD-compatible interface

2018-02-18 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: ctdopts Version : 1.2 Upstream Author : Andras Szolek et al. * URL : https://github.com/WorkflowConversion/CTDopts * License : GPL-3+ Programming Lang: Python Description : Gives yo

Bug#890061: ITP: galaxy-lib -- Subset of Galaxy core code base designed to be used

2018-02-10 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: galaxy-lib Version : 17.9.10 Upstream Author : Galaxy Project and Community * URL : https://github.com/galaxyproject/galaxy-lib * License : AFL Programming Lang: Python Description

Bug#860746: ITP: easel -- a library of C functions for biological sequence analysis

2017-04-19 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: easel Version : 0.43 Upstream Author : Sean R. Eddy * URL : https://github.com/EddyRivasLab/easel * License : BSD-3-clause Programming Lang: C Description : a library of C function

Bug#851488: ITP: python-gffutils -- Work with GFF and GTF files in a flexible database framework

2017-01-15 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-gffutils Version : 0.8.7.1 Upstream Author : Ryan Dale * URL : http://daler.github.io/gffutils/ * License : MIT Programming Lang: Python Description : Work with GFF and GTF

Bug#851358: ITP: python-pybedtools -- Python wrapper around BEDTools for bioinformatics work

2017-01-14 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-pybedtools Version : 0.7.8 Upstream Author : Ryan Dale * URL : https://github.com/daler/pybedtools * License : GPL 2+ Programming Lang: Python, Cython, Description : Python

Bug#841047: ITP: r-hms-dbmi-spp -- GNU R package for processing ChIP-seq & other functional sequencing data

2016-10-17 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-hms-dbmi-spp Version : 1.14 Upstream Author : peterK * URL : http://compbio.med.harvard.edu/Supplements/ChIP-seq/ * License : GPL-2 Programming Lang: R, C++ Description : GNU R p

Bug#834592: ITP: hisat2 -- graph-based alignment of short nucleotide reads to many genomes

2016-08-17 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: hisat2 Version : 2.0.4 Upstream Author : HISAT2 team * URL : https://ccb.jhu.edu/software/hisat2/index.shtml * License : GPL-3+ Programming Lang: Perl, Python, C++ Description : gr

Bug#834590: ITP: python3-typed-ast -- AST with PEP 484 type comments support

2016-08-17 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python3-typed-ast Version : 0.5.5 Upstream Author : David Fisher * URL : https://pypi.python.org/pypi/typed-ast * License : Python, Apache-2.0 Programming Lang: Python, C Description

Bug#828850: ITP: r-bioc-deseq2 -- R package for RNA-Seq Differential Expression Analysis

2016-06-28 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-deseq2 Version : 1.12.3 Upstream Author : Michael Love * URL : https://bioconductor.org/packages/DESeq2 * License : LGPL-3+ Programming Lang: R Description : R package for R

Bug#828796: ITP: r-bioc-geneplotter -- R package of functions for plotting genomic data

2016-06-27 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-geneplotter Version : 1.50.0 Upstream Author : Bioconductor Package Maintainer * URL : http://bioconductor.org/packages/geneplotter/ * License : Artistic-2.0 Programming Lang: R

Bug#828690: ITP: r-cran-pscbs -- R package: Analysis of Parent-Specific DNA Copy Numbers

2016-06-26 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-pscbs Version : 0.61.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/PSCBS * License : GPL-2+ Programming Lang: R Description : R package: An

Bug#828197: ITP: r-cran-future -- R package: A Future API for R

2016-06-25 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-future Version : 1.0.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/future * License : LGPL-2.1+ Programming Lang: R Description : R package

Bug#828196: ITP: r-cran-globals -- R package: Identify Global Objects in R Expressions

2016-06-25 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-globals Version : 0.6.1 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/globals * License : LGPL-2.1+ Programming Lang: R Description : R packa

Bug#828194: ITP: r-cran-listenv -- R package: Environments Behaving (Almost) as Lists

2016-06-25 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-listenv Version : 0.6.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/listenv * License : LGPL 2.1+ Programming Lang: R Description : R packa

Bug#828189: ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis

2016-06-25 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-dnacopy Version : 1.46.0 Upstream Author : Venkatraman E. Seshan * URL : http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html * License : GPL-2.0+ Programming Lang

Bug#828184: ITP: r-cran-r.cache -- R package: Fast and Light-Weight Caching of Objects and Results

2016-06-25 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-r.cache Version : 0.12.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/R.cache * License : LGPL (>= 2.1) Programming Lang: R Description : R

Bug#828176: ITP: cnvkit -- Copy number variant detection from targeted DNA sequencing

2016-06-25 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cnvkit Version : 0.7.11 Upstream Author : Eric Talevich * URL : http://cnvkit.readthedocs.io/ * License : Apache-2.0 Programming Lang: Python Description : Copy number variant dete

Bug#823512: ITP: mypy -- Optional static typing for Python

2016-05-05 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: mypy Version : 0.3.1 Upstream Author : Jukka Lehtosalo * URL : http://www.mypy-lang.org/ * License : MIT Programming Lang: Python Description : Optional static typing for Python A

Re: Bug#817056: ITP: python-typing -- Type Hints for Python

2016-03-07 Thread Michael R. Crusoe
at 7:38 PM, Scott Kitterman wrote: > On Monday, March 07, 2016 09:01:30 AM Michael R. Crusoe wrote: > > Package: wnpp > > Severity: wishlist > > Owner: Debian Med team > > > > * Package name: python-typing > > Version : 3.5.0.1 > > U

Bug#817056: ITP: python-typing -- Type Hints for Python

2016-03-07 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-typing Version : 3.5.0.1 Upstream Author : Guido van Rossum, Jukka Lehtosalo, Ɓukasz Langa * URL : https://docs.python.org/3.5/library/typing.html * License : Python 2.0 Programm

Bug#814050: ITP: varna -- Visualization Applet for RNA

2016-02-07 Thread Michael R. Crusoe
Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: varna Version : 3-93 Upstream Author : Kevin Darty, Alain Denise and Yann Ponty * URL : http://varna.lri.fr/ * License : GPL-3 Programming Lang: Java Description : Visualization A

Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-02-07 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cwltool Version : 1.0.20160203221531 Upstream Author : Common Workflow Language working group * URL : http://www.commonwl.org * License : Apache-2.0 Programming Lang: Python Descripti

Bug#813839: ITP: python-schema-salad -- rdflib extension adding JSON-LD parser and serializer

2016-02-05 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-schema-salad Version : 1.6.2016020448 Upstream Author : Common workflow language working group * URL : https://pypi.python.org/pypi/schema-salad * License : Apache-2.0 Progra

Bug#813827: ITP: python-rdflib-jsonld -- rdflib extension adding JSON-LD parser and serializer

2016-02-05 Thread Michael R. Crusoe
Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: python-rdflib-jsonld Version : 0.3 Upstream Author : RDFLib Team * URL : https://github.com/RDFLib/rdflib-jsonld * License : BSD Programming Lang: Python Description : rdflib extens