Bug#981680: closed by Debian FTP Masters (reply to Mathias Gibbens ) (Bug#981680: fixed in golang-github-canonical-go-dqlite 1.10.1-1)

2022-04-18 Thread Nilesh Patra
Control: severtiy -1 important On Fri, 26 Nov 2021 14:43:09 +0200 Adrian Bunk wrote: > Control: reopen -1 > > On Fri, Nov 26, 2021 at 12:21:09PM +, Debian Bug Tracking System wrote: > >... > > golang-github-canonical-go-dqlite (1.10.1-1) unstable; urgency=medium > >... > >* Add patches

Bug#1005500: argh: FTBFS: doctest.h:1398:92: error: use of deleted function ‘doctest::detail::Expression_lhs >::Expression_lhs(doctest::detail::Expression

2022-04-20 Thread Nilesh Patra
Control: retitle -1 doctest Control: reassign -1 doctest Control: affects -1 argh Control: tags -1 - help Control: forwarded -1 https://github.com/doctest/doctest/issues/630 On Thu, 17 Mar 2022 09:56:54 +0100 Andreas Tille wrote: > Control: tags -1 help > Control: tags -1 upstream > Control: forw

Bug#1005500: argh: FTBFS: doctest.h:1398:92: error: use of deleted function ‘doctest::detail::Expression_lhs >::Expression_lhs(doctest::detail::Expression

2022-04-20 Thread Nilesh Patra
Control: retitle -1 doctest breaks argh build: doctest.h:1398:92: error: use of deleted function ‘doctest::detail::Expression_lhs >::Expression_lhs(doctest::detail::Expression_lhs >&&)’ Control: reassign -1 src:doctest Fixing BTS mess-ups from my prev email. Best, Nilesh signature.asc Descrip

Bug#1009680: ghostscript breaks ocrmypdf autopkgtest: seemingly multiple issues

2022-04-20 Thread Nilesh Patra
Hi, On Thu, 14 Apr 2022 14:23:43 -0700 Sean Whitton wrote: > control: reassign -1 ghostscript > control: forwarded -1 https://bugs.ghostscript.com/show_bug.cgi?id=705187 > control: retitle -1 Ghostscript 9.56 removes hidden (e.g. OCR) text layers > when refrying with NEWPDF=true > > Hello, >

Bug#1010276: parasail: compiles something extra (or less) depending on the CPU features available

2022-04-29 Thread Nilesh Patra
Hi Etienne, would you have some bandwidth to fix this one? Regards Nilesh On Wed, 27 Apr 2022 18:01:01 +0200 Mattia Rizzolo wrote: > Source: parasail > Version: 2.5+dfsg-3 > Severity: serious > User: reproducible-bui...@lists.alioth.debian.org > Usertags: cpu > > Hi! > > While working on the

Bug#1008464: marked as pending in sia

2022-04-30 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1008464 in sia reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/sia/-/commit/ebaddea177062f8effdf8771f9b03b9

Bug#984262: marked as pending in o3dgc

2022-05-02 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #984262 in o3dgc reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debian/o3dgc/-/commit/69adabf95bd879562c75c0a1f01bd69ec8742c

Bug#996422: marked as pending in golang-github-mendersoftware-openssl

2022-05-15 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #996422 in golang-github-mendersoftware-openssl reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-gith

Bug#1009454: r-bioc-rtracklayer: FTBFS: chain_io.c:1:10: fatal error: S.h: No such file or directory

2022-05-16 Thread Nilesh Patra
Control: fixed -1 1.56.0-1 Control: close -1 > During a rebuild of all packages in sid, your package failed to build > on amd64. > > > Relevant part (hopefully): > > gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 > > -I'/usr/lib/R/site-library/S4Vectors/include' > > -I'/usr/lib/

Bug#1017391: kpmcore: FTBFS on armel

2022-09-12 Thread Nilesh Patra
Hi Jonathan/Aurelien, Looks like armel needs some more symbols in symbols file for kpmcore. (I did not dig deep, but maybe this package should provide different symbol files per-architecture?) In any case, this RC bug is stalling migration of kpmcore and consequently calamares for over a month.

Bug#1019512: marked as pending in r-cran-jquerylib

2022-09-12 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1019512 in r-cran-jquerylib reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-cran-jquerylib/-/commit/e54bad7631f

Bug#1019513: node-jquery breaks r-cran-pkgdown autopkgtest: replacement has 11 rows, data has 10

2022-09-12 Thread Nilesh Patra
Control: reassign -1 r-cran-jquerylib 0.1.4+dfsg-3 Control: reassign 1019514 r-cran-jquerylib 0.1.4+dfsg-3 Control: close -1 Control: close 1019514 Both this and #1019514 are due to jquerylib build pointing to old symlinks of jquery. I have re-uploaded a new changelog revision with this updated an

Bug#1020049: [notificati...@github.com: Re: [hhoeflin/hdf5r] datatype_export.c:1903:19: error: storage size of ‘myenum’ isn’t known (Issue #192)]

2022-09-22 Thread Nilesh Patra
On Thu, Sep 22, 2022 at 09:05:50AM +0200, Andreas Tille wrote: > Control: tags -1 help I pushed something to salsa that makes things work atleast locally for me however if my patch does a sensible thing. As far as I checked the hdf5 code, I am seeing "H5R_type_t" to be already an enum, and I am n

Bug#1020031: marked as pending in khmer

2022-09-24 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1020031 in khmer reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/khmer/-/commit/e6df1517f6d4cd9fc8a459eab6f17f43b5b

Bug#1020208: singularity-container: FTBFS: make[2]: *** [Makefile:181: singularity] Error 2

2022-09-24 Thread Nilesh Patra
Control: found -1 singularity-container/3.10.2+ds2-3 Control: found -1 umoci/0.4.7+ds-3 Control: retitle -1 umoci makes singularity-container FTBFS I tried with golang-github-opensuse-umoci-dev version 0.4.7+ds-2 in my schroot, and it builds fine there. On upgrading and building, it chokes. This a

Bug#1020208: singularity-container: FTBFS: make[2]: *** [Makefile:181: singularity] Error 2

2022-09-24 Thread Nilesh Patra
On Sun, Sep 25, 2022 at 01:19:38PM +0800, Shengjing Zhu wrote: > Control: notfound -1 umoci/0.4.7+ds-3 > > On Sun, Sep 25, 2022 at 11:34 AM Nilesh Patra wrote: > > > > Control: found -1 singularity-container/3.10.2+ds2-3 > > Control: found -1 umoci/0.4.7+ds-3 > >

Bug#1024170: mcl breaks roary autopkgtest: different output

2022-11-16 Thread Nilesh Patra
On Wed, Nov 16, 2022 at 11:25:02AM +0100, Andreas Tille wrote: > Am Tue, Nov 15, 2022 at 09:16:53PM +0100 schrieb Paul Gevers: > > 2022/11/15 09:16:56 Cannot find the mcxdeblast executable, please ensure its > > in your PATH The error is here ^^^ mcl has stopped vendoring mxcdeblast since your las

Bug#1024170: mcl breaks roary autopkgtest: different output

2022-11-16 Thread Nilesh Patra
On Wed, Nov 16, 2022 at 05:30:21PM +0530, Nilesh Patra wrote: > On Wed, Nov 16, 2022 at 11:25:02AM +0100, Andreas Tille wrote: > > Am Tue, Nov 15, 2022 at 09:16:53PM +0100 schrieb Paul Gevers: > > > 2022/11/15 09:16:56 Cannot find the mcxdeblast executable, please ensure >

Bug#1024170: mcl breaks roary autopkgtest: different output

2022-11-16 Thread Nilesh Patra
On 11/16/22 18:30, Andreas Tille wrote: Control: tags -1 pending Am Wed, Nov 16, 2022 at 05:35:12PM +0530 schrieb Nilesh Patra: $ debdiff mcl_14-137+ds-9.dsc mcl_22-282+ds-1.dsc 2>/dev/null | wc -l 51040 That's quite a lot of lines. Something definitely changed. And I found out what

Bug#1024010: compreffor FTBFS with Python 3.11 as supported version

2022-11-16 Thread Nilesh Patra
Hi Python team/Stefano, On Sun, 13 Nov 2022 20:34:36 +0200 Adrian Bunk wrote: > Source: compreffor > Version: 0.5.1-2 > Severity: serious > Tags: ftbfs > > https://buildd.debian.org/status/logs.php?pkg=compreffor&ver=0.5.1-2%2Bb2 > > ... > src/cython/_compreffor.cpp:196:12: fatal error: longint

Bug#1023677: bart-cuda build depends on gcc-10 that should not be in bookworm

2022-11-17 Thread Nilesh Patra
Control: reassign -1 nvidia-cuda-toolkit 11.6.2-3 On Tue, 08 Nov 2022 20:16:33 +0200 Adrian Bunk wrote: > Source: bart-cuda > Version: 0.8.00-1 > Severity: serious > Control: block 1023666 by -1 > > According to https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016625#65 > gcc-11 might be a tem

Bug#1023677: bart-cuda build depends on gcc-10 that should not be in bookworm

2022-11-17 Thread Nilesh Patra
On Thu, Nov 17, 2022 at 03:58:42PM +0100, Andreas Beckmann wrote: > On 17/11/2022 15.34, Nilesh Patra wrote: > > In that case, I am re-assigning this to nvidia-cuda-toolkit since nvcc > > needs to > > support gcc-12. > > Please tell this $VENDOR. > > > The

Bug#1023677: bart-cuda build depends on gcc-10 that should not be in bookworm

2022-11-17 Thread Nilesh Patra
Control: reassign -1 bart-cuda 0.8.00-1 Control: fixed -1 0.8.00-2 Control: close -1 On Thu, Nov 17, 2022 at 05:34:05PM +0200, Adrian Bunk wrote: > The situation around gcc-11 is less obvious, > and gcc-11 usage in nvidia-cuda-toolkit is a separate bug. OK then, re-assigning and closing. -- Be

Bug#1024349: diffoscope -- Fails its autopkgtests blocking testing migration

2022-11-17 Thread Nilesh Patra
Package: diffoscope Version: 226 Severity: serious X-Debbugs-Cc: la...@debian.org Hi, diffocope fails its autopkgtest blocking testing migration both for itself and r-base[1]. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = < /tmp/autopkgtest-lxc.zwiyv6c

Bug#1024557: python3-branca: __version__ "unknown" breaks folium

2022-11-21 Thread Nilesh Patra
Control: tags -1 patch Hi, The fix is just a one-liner. If you do not fix it in next seven days, I will NMU it. (I prefer not going the delayed queue route) diff --git a/debian/control b/debian/control index 7eff938..fce9cfa 100644 --- a/debian/control +++ b/debian/control @@ -6,6 +6,7 @@ Build-

Bug#1023678: clasp: diff for NMU version 3.3.5-4.2

2022-11-21 Thread Nilesh Patra
On Sat, 19 Nov 2022 12:14:16 +0200 Adrian Bunk wrote: > Control: tags 1023678 + patch > Control: tags 1023678 + pending > > Dear maintainer, > > I've prepared an NMU for clasp (versioned as 3.3.5-4.2) and uploaded > it to DELAYED/15. Please feel free to tell me if I should cancel it. This is a

Bug#1024169: csound breaks csound-plugins autopkgtest: *** stack smashing detected ***: terminated

2022-11-22 Thread Nilesh Patra
Control: forwarded -1 https://github.com/csound/csound/issues/1651 On Tue, 15 Nov 2022 23:50:51 +0100 =?UTF-8?Q?Bernhard_=c3=9cbelacker?= wrote: > this looks like caused by a disaggrement about the size of type OPARMS. > In libcsound64-6.0 it has 264 bytes, but in csound-plugins > only 260 bytes

Bug#1022307: status on t_coffee causing biopython ftbfs

2022-11-23 Thread Nilesh Patra
Hi Andrius, all, On Wed, 23 Nov 2022 15:07:32 +0200 Andrius Merkys wrote: > On Tue, 22 Nov 2022 23:54:48 +0100 =?utf-8?Q?=C3=89tienne?= Mollier > wrote: > > Hi, mostly retitling the open entry against biopython for the > > sake of clarity, and also pinging both bugs to reset auto- > > removal c

Bug#1023738: orthanc-dicomweb FTBFS with node-axios 1.1

2022-11-24 Thread Nilesh Patra
On Fri, 18 Nov 2022 22:48:42 +0100 =?utf-8?Q?=C3=89tienne?= Mollier wrote: > Control: tags -1 + patch > > Hi Sébastien, > > orthanc-dicomweb is currently affected by a failure to build > from source (Bug#1023738). I took the liberty to have a look, > and it seems that since axios 1.0 the dist/

Bug#1024493: Proposed-RM: bs1770gain -- RoQA; inappropriate content

2022-11-24 Thread Nilesh Patra
On Mon, 21 Nov 2022 13:53:43 +0100 Leon van Kammen wrote: > my few cents: the problem with censorship is, once you start, the > rabbithole is infinite. > Whatever shitty homepage or comment it is, eventually it's just a homepage > or comment. > I think debian-devs should not be going down the rab

Bug#1020576: please update sage for pari 2.15.0 and gap 4.12.0

2022-11-26 Thread Nilesh Patra
Hi Tobias and Bill, On Wed, 19 Oct 2022 01:05:44 +0200 Bill Allombert wrote: > On Mon, Oct 17, 2022 at 08:44:52AM +, Tobias Hansen wrote: > > Control: block -1 by 1020436 1020456 > > > > Before sagemath can be fixed, cypari2 and giac have to be built against > > pari 2.15. There's a new re

Bug#1020576: please update sage for pari 2.15.0 and gap 4.12.0

2022-11-27 Thread Nilesh Patra
On Sun, Nov 27, 2022 at 05:35:17PM +, Tobias Hansen wrote: > On 11/27/22 06:37, Nilesh Patra wrote: > > Tobias, since this is done, would you consider to check sagemath now and > > get the ball rolling? :-) > > Hi, > > I actually tried building with the new pa

Bug#1024986: python-biopython: does not vendor bindings for python3.11 yet

2022-11-28 Thread Nilesh Patra
Source: python-biopython Version: 1.79+dfsg-3 Severity: serious X-Debbugs-Cc: debian-...@lists.debian.org Control: block 1024855 by -1 Control: block 1024858 by -1 Hi, biopython in unstable does not vendor bindings for python3.11, due to which augur and busco fail their autopkgtest. Thanks, Nile

Bug#1024954: librcsb-core-wrapper: (autopkgtest) needs update for python3.11: initialization of CorePyWrap raised unreported exception

2022-11-28 Thread Nilesh Patra
Hi all, On Sun, 27 Nov 2022 22:26:31 +0100 Paul Gevers wrote: > Source: librcsb-core-wrapper > Version: 1.005-10 > We are in the transition of adding python3.11 as a supported Python > version [0]. > [...] > [0] https://bugs.debian.org/1021984 > [1] https://qa.debian.org/excuses.php?package=pyth

Bug#1019630: marked as pending in ruby-hoe

2022-12-02 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1019630 in ruby-hoe reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-hoe/-/commit/c0703e8e578eccdba3120cf1e56e

Bug#1015102: heudiconv: FTBFS: FAILED heudiconv/tests/test_heuristics.py::test_reproin_largely_smoke[--files /<>/.pybuild/cpython3_3.10_heudiconv/build/heudiconv/tests/data-reproin]

2022-09-29 Thread Nilesh Patra
Hi Yaroslav, Since you are the upstream for heudiconv, could you please help fix this? On Sat, 16 Jul 2022 15:49:48 +0200 Lucas Nussbaum wrote: > Source: heudiconv > Version: 0.11.3-1 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User: lu...@debian.org > Usertags: ftbfs

Bug#1012893: [Help] anfo: ftbfs with GCC-12

2022-09-29 Thread Nilesh Patra
On 30 September 2022 10:57:16 am IST, Andreas Tille wrote: >Am Thu, Sep 29, 2022 at 05:41:52PM -0400 schrieb Aaron M. Ucko: >> Étienne Mollier writes: >> >> > I believe in the case of anfo, that warnings about auto_ptr / >> > unique_ptr are red herrings. If I search for "error:"s, then I >>

Bug#1020041: zope.testrunner: FTBFS: AttributeError: 're.Pattern' object has no attribute 'replace'

2022-10-01 Thread Nilesh Patra
reassign -1 dh-python 5.20220924 stop Hi, On Sun, 18 Sep 2022 08:02:58 +0200 Lucas Nussbaum wrote: > Source: zope.testrunner > > make[1]: Entering directory '/<>' > > dh_python3 --shebang=/usr/bin/python3 -X tests > > I: dh_python3 tools:114: replacing shebang in > > debian/python3-zope.testrun

Bug#1020022: marked as pending in python-argon2

2022-10-13 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1020022 in python-argon2 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-argon2/-/commit/6a62a7c

Bug#1017252: marked as pending in xcffib

2022-10-13 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1017252 in xcffib reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/xcffib/-/commit/ebeaf558a11c43f9c8936

Bug#1020043: pillow: FTBFS: ModuleNotFoundError: No module named 'PIL'

2022-10-13 Thread Nilesh Patra
Control: tags -1 patch Hi, Please consider applying the patch pasted inline if deemed appropriate. I confirm that it fixes the build locally for me. Thanks! diff --git a/debian/rules b/debian/rules index 68e9a8c..96cc5ca 100755 --- a/debian/rules +++ b/debian/rules @@ -23,7 +23,7 @@ build-indep

Bug#1021537: marked as pending in poetry-core

2022-10-13 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1021537 in poetry-core reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/poetry-core/-/commit/8ef7af5cf76

Bug#1020107: marked as pending in khal

2022-10-13 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1020107 in khal reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/khal/-/commit/05f11c59b0cae3fc7a27ac867

Bug#1021889: marked as pending in pylint-django

2022-10-16 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1021889 in pylint-django reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/pylint-django/-/commit/f2ac9bb

Bug#1021895: pylint: fails to honor "--" argument

2022-10-16 Thread Nilesh Patra
Package: pylint Version: 2.15.3-1 Severity: serious Tags: patch X-Debbugs-Cc: mo...@debian.org Hi, It seems that the new version of pylint does not honor the "--" arg. In particular, if you notice the autopkgtest for ionit[1] it fails with: /usr/bin/python3 -m pylint --rcfile=/tmp/autopkgtest-l

Bug#1021923: ionit: FTBFS dh_auto_test: error: pybuild --test -i python{version} -p 3.10 returned exit code 13

2022-10-17 Thread Nilesh Patra
affects 1021895 src:ionit close 1021923 stop Hi Michael, On Mon, 17 Oct 2022 13:56:40 +0200 Michael Biebl wrote: > Source: ionit > Version: 0.5.0-1 > Severity: serious > Tags: ftbfs > > ionit FTBFS in unstable > > > test_pylint (tests.test_pylint.PylintTestCase) > Test: Run pylint on Python s

Bug#1021895: pylint: fails to honor "--" argument

2022-10-17 Thread Nilesh Patra
Since this bug causes ionit to FTBFS and ionit is a dependency of lsb (key package) I will team-upload pylint if I don't get a response and/or it is not done within a week. Just a heads up. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1020043: pillow: FTBFS: ModuleNotFoundError: No module named 'PIL'

2022-10-21 Thread Nilesh Patra
I have NMU'd and put the pakcage to the DELAY queue with 7-day delay. Let me know if I should cancel it or reduce the delay. On Thu, 13 Oct 2022 17:58:54 +0530 Nilesh Patra wrote: > diff --git a/debian/rules b/debian/rules > index 68e9a8c..96cc5ca 100755 > --- a/debian/rules > +

Bug#937234: trying to remove python2.7 from bookworm

2022-10-21 Thread Nilesh Patra
On Fri, 16 Sep 2022 22:50:29 +0200 Paul Gevers wrote: > Hi Mike, > > On Mon, 15 Aug 2022 13:54:27 + Mike Gabriel > wrote: > > in another project context I have a freelancer working on pam-python > > Py3 transition. Will pick up the threads this week (I returned freshly > > from VAC yest

Bug#1022239: festival FTBFS: make[2]: *** [/usr/lib/speech_tools/config/rules/targets.mak:55: src] Error 2

2022-10-22 Thread Nilesh Patra
Source: festival Version: 1:2.5.0-8 Severity: serious X-Debbugs-Cc: sthiba...@debian.org Hi, Festival fails to build from source with: look at library Festival UniSyn.o us_prosody.o us_unit.o ps_synthesis.o us_mapping.o us_features.o Update library Festival UniSyn.o us_prosody.o us_unit.o ps_sy

Bug#996561: qepcad fails autopkgtests on !amd64, !i386

2021-10-15 Thread Nilesh Patra
Package: qepcad Version: 1.74+ds-2 Severity: serious X-Debbugs-Cc: dtorra...@piedmont.edu Hi Doug, qepcad fails its autopkgtests on every non-x86 arch as seen here. Can you fix this? https://qa.debian.org/excuses.php?package=qepcad Nilesh -- System Information: Debian Release: bookworm/sid A

Bug#996561: qepcad fails autopkgtests on !amd64 and !i386

2021-10-15 Thread Nilesh Patra
On Fri, 15 Oct 2021 19:59:40 +0530 Nilesh Patra wrote: > Package: qepcad > Version: 1.74+ds-2 > Severity: serious > X-Debbugs-Cc: dtorra...@piedmont.edu > > Hi Doug, > > qepcad fails its autopkgtests on every non-x86 arch as seen here. > Can you fix this? > >

Bug#996407: diamond-aligner breaks proteinortho autopkgtest: diamond failed with code 256

2021-10-16 Thread Nilesh Patra
On Wed, 13 Oct 2021 21:07:45 +0200 Paul Gevers wrote: With a recent upload of diamond-aligner the autopkgtest of proteinortho fails in testing when that autopkgtest is run with the binary packages of diamond-aligner from unstable. It passes when run with only packages from testing. Hi Michael,

Bug#996407: [RFH] proteinortho: diamond-aligner breaks proteinortho autopkgtest: diamond failed with code 256

2021-10-16 Thread Nilesh Patra
On Wed, 13 Oct 2021 21:07:45 +0200 Paul Gevers wrote: With a recent upload of diamond-aligner the autopkgtest of proteinortho fails in testing when that autopkgtest is run with the binary packages of diamond-aligner from unstable. It passes when run with only packages from testing. Hi Michael,

Bug#996374: python-nanoget: autopkgtest regression

2021-10-16 Thread Nilesh Patra
control: forwarded -1 https://github.com/wdecoster/nanoget/issues/26 Not sure what exactly causes this, found a related (unfixed) problem in pysam here: https://github.com/pysam-developers/pysam/issues/939 Maybe this is the problem ^^^ Nilesh OpenPGP_signature Description: OpenPGP

Bug#996374: python-nanoget: autopkgtest regression

2021-10-16 Thread Nilesh Patra
More deets: trying with samtools version 1.13 and manually creating this also fails. $ samtools index alignment.bam $ diff alignment.bam.bai alignment.bam.bai_orig Binary files alignment.bam.bai and alignment.bam.bai_orig differ Nilesh OpenPGP_signature Description: OpenPGP digital signature

Bug#993042: nim FTBFS on armhf when built on arm64 hardware

2021-10-19 Thread Nilesh Patra
Hi Federico, On Thu, 26 Aug 2021 21:55:02 +0300 Adrian Bunk wrote:> https://buildd.debian.org/status/fetch.php?pkg=nim&arch=armhf&ver=1.4.8-2&stamp=1629152447&raw=0 ... The uname usage in tools/niminst/makefile.nimf is fragile. Adding cases for armv8l and armv9l might work due to the Debian

Bug#996985: marked as pending in pbdagcon

2021-10-22 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #996985 in pbdagcon reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/pbdagcon/-/commit/df3de79df7d038ef0f7136f8ef8fde

Bug#996312: marked as pending in ruby-librarian

2021-10-22 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #996312 in ruby-librarian reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-librarian/-/commit/f611e2e5aae09f618

Bug#984036: disulfinder: ftbfs with GCC-11

2021-10-22 Thread Nilesh Patra
On Wed, 03 Mar 2021 16:11:37 + Matthias Klose wrote: BRNN/RNNs/Options.h:69:5: error: ISO C++17 does not allow dynamic exception specifications 69 | throw(BadOptionSetting); | ^ BRNN/RNNs/Options.h:143:5: error: ISO C++17 does not allow dynamic exception specifications 1

Bug#996226: marked as pending in ruby-fakeweb

2021-10-22 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #996226 in ruby-fakeweb reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-fakeweb/-/commit/47ca9d5e9e2f27f95c7d6

Bug#984036: disulfinder: ftbfs with GCC-11

2021-10-22 Thread Nilesh Patra
On 10/22/21 9:23 PM, Étienne Mollier wrote: Hi Nilesh, Nilesh Patra, on 2021-10-22: looks like C++17 has removed the provision to specify custom exceptions, and there are a lot of errors like the one above. In this case, does it makes sense to force C++14 standard (with chnages in d/rules or

Bug#997157: marked as pending in bedops

2021-10-24 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997157 in bedops reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/bedops/-/commit/6cf9456f9045e59b02e9da5012da979612

Bug#996642: csh: FTBFS with glibc 2.32

2021-10-25 Thread Nilesh Patra
(Resending with a different email, since my earlier mail bounced back, because of your DNS seeing it with invalid SPF) Hi Alastair, On Sat, 16 Oct 2021 18:47:48 +0200 Graham Inggs wrote: > Source: csh > Version: 20110502-6 > Severity: serious > Tags: ftbfs patch bookworm sid > > Hi Maintainer >

Bug#996642: csh: FTBFS with glibc 2.32

2021-10-25 Thread Nilesh Patra
Hi Alastair, On Sat, 16 Oct 2021 18:47:48 +0200 Graham Inggs wrote: Source: csh Version: 20110502-6 Severity: serious Tags: ftbfs patch bookworm sid Hi Maintainer As can be seen in reproducible builds [1], csh FTBFS since glibc 2.32 was uploaded. I've attached a patch from Ubuntu where this w

Bug#963628: Node-jest fails with: Error: Cannot find module 'import-local'

2020-06-24 Thread Nilesh Patra
Package: node-jest Severity: serious Dear Maintainer, Node-jest fails with the following on all the node-modules I've tried yet. Sample examples on node-compression-webpack-plugin version 2.0.0-3 and node-proper-lockfile version 4.1.1-2 internal/modules/cjs/loader.js:800 throw err; ^ E

Bug#963628: [Pkg-javascript-devel] Bug#963628: Bug#963628: Node-jest fails with: Error: Cannot find module 'import-local'

2020-06-27 Thread Nilesh Patra
On Sun, 28 Jun 2020, 02:45 Xavier, wrote: > Control: severity -i grave > Thanks. > Le 24/06/2020 à 21:18, Nilesh Patra a écrit : > > Package: node-jest > > Severity: serious > > > > Dear Maintainer, > > > > Node-jest fails with the follo

Bug#963628: [Pkg-javascript-devel] Bug#963628: Bug#963628: Node-jest fails with: Error: Cannot find module 'import-local'

2020-06-27 Thread Nilesh Patra
Also, as I dug in a bit, the "import-local" module has this description: """ Let a globally installed package use a locally installed version of itself if available For our use-case we would need modules only from /usr/share/* right? So _maybe_ this has no real use here? Let me know if this

Bug#963764: [Pkg-javascript-devel] Bug#963764: Bug#963764: node-node-sass: uses embedded old security-buggy libsass

2020-07-08 Thread Nilesh Patra
Hi, On Wed, 8 Jul 2020, 19:30 Jonas Smedegaard, wrote: > Quoting mer...@debian.org (2020-07-08 15:13:06) > > The upstream has updated the libsass support to 3.6.3 [1], it's just > > not released yet. I have successfully used head of their git > > repository to build node-node-sass without the em

Bug#963764: [Pkg-javascript-devel] Bug#963764: Bug#963764: node-node-sass: uses embedded old security-buggy libsass

2020-07-08 Thread Nilesh Patra
On Wed, 8 Jul 2020, 20:22 Jonas Smedegaard, wrote: > Quoting Nilesh Patra (2020-07-08 16:26:34) > > On Wed, 8 Jul 2020, 19:30 Jonas Smedegaard, wrote: > > > Please strongly consider to not only make the package link with > > > system-shared libsass, but also repa

Bug#963764: [Pkg-javascript-devel] Bug#963764: Bug#963764: node-node-sass: uses embedded old security-buggy libsass

2020-07-08 Thread Nilesh Patra
On Wed, 8 Jul 2020, 20:38 Jonas Smedegaard, wrote: > Quoting Nilesh Patra (2020-07-08 17:00:01) > > On Wed, 8 Jul 2020, 20:22 Jonas Smedegaard, wrote: > > > > > Quoting Nilesh Patra (2020-07-08 16:26:34) > > > > On Wed, 8 Jul 2020, 19:30 Jonas Smedegaar

Bug#956517: marked as pending in node-rw

2020-04-19 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #956517 in node-rw reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/js-team/node-rw/-/commit/aafe5ed3df7f1596fcf6d53e935d38bfc

Bug#952321: marked as pending in golang-github-akrennmair-gopcap

2020-03-22 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #952321 in golang-github-akrennmair-gopcap reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-github-ak

Bug#952199: marked as pending in golang-github-boltdb-bolt

2020-03-22 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #952199 in golang-github-boltdb-bolt reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-github-boltdb-bo

Bug#951634: Broken package in testing repository

2020-03-25 Thread Nilesh Patra
Hi Alexander, Hugo, Graham On Wed, 25 Mar 2020, 21:45 Alexander van der Meij, < vandermeij.t...@gmail.com> wrote: > > > > Hi Debian Science team, > > As described in bug 951634 > , Debian is > currently distributing a broken development b

Bug#954500: Droping pyqi which seemed to be needed for qiime1 only (Was: Bug#954500: pyqi: FTBFS: dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2)

2020-03-30 Thread Nilesh Patra
Hi On Mon, 30 Mar 2020, 17:12 Andreas Tille, wrote: > Hi, > > I fixed the actual issue in Git but got a new error: > > > ... >dh_auto_test -O--buildsystem=pybuild > I: pybuild base:217: cd > /build/pyqi-0.3.2+dfsg/.pybuild/cpython3_3.8/build; python3.8 -m unittest > discover -v > /build/pyqi

Bug#970550: [Pkg-javascript-devel] Bug#970550: replacing browserify with webpack or rollup - need help

2020-09-20 Thread Nilesh Patra
Hi, On Sun, 20 Sep 2020 at 15:18, Pirate Praveen wrote: > Control: tags -1 help > > On Sun, Sep 20, 2020 at 14:44, Pirate Praveen > wrote: > > The warning now changes to, > > > > (!) Missing shims for Node.js built-ins > > Creating a browser bundle that depends on 'path', 'url' and 'os'. You >

Bug#936825: Help for issues with lazyarray needed

2020-03-05 Thread Nilesh Patra
On Thu, 5 Mar 2020, 14:16 Andreas Tille, wrote: > Control: tags -1 pending > > Hi, > > I have updated lazyarray in Git[1] (by moving it to Debian Science > team). The old package was lagging way behind upstream and a Python3 > port is available by upstream so I just create the python3-lazyarray

Bug#950666: [Pkg-javascript-devel] Bug#950666: node-terser FTBFS: test failures

2020-02-18 Thread Nilesh Patra
Hi On Wed, 05 Feb 2020 13:41:37 +0100 Jonas Smedegaard wrote: > control: tags -1 +confirmed > control: retitle -1 node-terser FTBFS: fails 7 tests in "bin/uglifyjs" and "bin/uglifyjs with input file globs" > > Quoting Adrian Bunk (2020-02-04 16:29:34) > > Source: node-terser > > Version: 4.1.2-4

Bug#970462: [RFS] Bug#970462: sweed: autopkgtest arm64 failure

2020-09-20 Thread Nilesh Patra
Hi, On Sun, 20 Sep 2020 at 20:34, Étienne Mollier wrote: > Control: tags -1 pending > > Greetings, > > I tried to investigate the issue of running SweeD autopkgtests > on arm64. It turned out to be caused by the assumption that the > "char" type was "signed" by default, while it is "unsigned" b

Bug#971148: umap-learn: FTBFS: unsatisfiable build-dependency: python3-llvmlite (< 0.34) but 0.34.0-1 is to be installed

2020-09-29 Thread Nilesh Patra
I suppose this FTBFS is due to numba[1] instead of umap-learn. Hence, this would as well FTBFS. It might be a better idea to close this bug and open a bug report against numba instead, so that umap-learn migrates to testing after the bug is fixed in numba, w/o having to close this bug manually. Th

Bug#920545: [RFS] python-intervaltree-bio

2020-10-05 Thread Nilesh Patra
Hi, I've attempted to fix: #920545 which is about failing autopkgtests for python-intervaltree-bio. It seems to pass on my chroot and I've pushed the corresponding changes to the team repo here[1]. It'd be great if someone could try testing my changes once - and either sponsor or grant me access to

Bug#964101: marked as pending in tiddit

2020-10-06 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #964101 in tiddit reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/tiddit/-/commit/eafa7abbf1d586c4b77f82bb4ba72cc0aa

Bug#962863: r-cran-rdflib: autopkgtest regression

2020-07-20 Thread Nilesh Patra
On Mon, 15 Jun 2020 11:17:24 +0200 Graham Inggs wrote: > Source: r-cran-rdflib > Version: 0.2.3+dfsg-1 > Severity: serious > X-Debbugs-CC: debian...@lists.debian.org > User: debian...@lists.debian.org > Usertags: regression > > Hi Maintainer > > Sometime in the last month, r-cran-rdflib started to

Bug#964610: nibabel: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13

2020-07-27 Thread Nilesh Patra
On Tue, 21 Jul 2020 15:52:22 +0200 Andreas Tille wrote: > Control: tags -1 - upstream > Control: tags -1 pending > > The build time test issue was solved thanks to upstream (switched from > nose to pytest). Unfortunately there are now issues with sphinx to > build the docs. My dirty workaroung did

Bug#961399: seaview: autopkgtest regression: gzip: *.gz: No such file or directory

2020-05-24 Thread Nilesh Patra
On Sun, 24 May 2020, 19:06 Andreas Tille, wrote: > On Sun, May 24, 2020 at 08:02:56AM +0200, Paul Gevers wrote: > > gzip: *.gz: No such file or directory > > I've fixed this one but the test has changed and seems to require a > running X server. Either this can be changed via command line option

Bug#961499: [RFS] r-cran-sjplot and r-cran-sjmisc

2020-05-26 Thread Nilesh Patra
Hi On Tue, 26 May 2020, 13:26 Andreas Tille, wrote: > Hi Nilesh, > > same as for r-cran-sjplot: In commit d2c969cc you move a file out of > help system to doc and I'm not convinced that this is not dangerous. > Ahh, righty! I didn't realise the help system thing while moving it, and this was i

Bug#961591: [RFS] r-bioc-graph

2020-05-27 Thread Nilesh Patra
Hi, Currently r-bioc-graph has failing tests, and has RC bug - #961591 filed against this. I have fixed this and pushed my changes to the team repo here[1]. Need review and sponsorship. [1]: https://salsa.debian.org/r-pkg-team/r-bioc-graph Thank

Bug#961591: [RFS] r-bioc-graph

2020-05-27 Thread Nilesh Patra
On Wed, 27 May 2020, 23:28 Dylan Aïssi, wrote: > Hi Nilesh, > > Le mer. 27 mai 2020 à 19:36, Nilesh Patra a écrit : > > > > Hi, > > Currently r-bioc-graph has failing tests, and has RC bug - #961591 filed > against this. > > I have fixed this and pushe

Bug#961591: [RFS] r-bioc-graph

2020-05-27 Thread Nilesh Patra
On Thu, 28 May 2020, 01:43 Dylan Aïssi, wrote: > Hi, > > Le mer. 27 mai 2020 à 20:04, Nilesh Patra a écrit : > > > > The second test (needing the library) failed on gitlab-ci, w/o adding > r-cran-xml and r-cran-runit, possible because this doesn't pick up depends

Bug#936798: Please port KisSplice to Python3 (Was: Bug#936798: kissplice: Python2 removal in sid/bullseye)

2020-05-28 Thread Nilesh Patra
Hi, On Fri, 29 May 2020, 01:08 Andreas Tille, wrote: > Hi Moritz, > > On Thu, May 28, 2020 at 08:48:41PM +0200, Moritz Mühlenhoff wrote: > > > > JFTR, this is now fixed upstream in 2.5.0 and later: > > http://kissplice.prabi.fr/download/: > > > > -- > > Kisspl

Bug#962085: bcalm, kissplice: both ship /usr/bin/bcalm

2020-06-03 Thread Nilesh Patra
Hi, On Wed, 3 Jun 2020, 14:50 Andreas Tille, wrote: > Hi Andreas, > > thanks for spotting this. > > On Wed, Jun 03, 2020 at 09:41:12AM +0200, Andreas Beckmann wrote: > > Package: bcalm,kissplice > > Severity: serious > > User: trei...@debian.org > > Usertags: edos-file-overwrite > > Control: fou

Bug#961901: marked as pending in djangorestframework-gis

2020-06-13 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #961901 in djangorestframework-gis reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/modules/djangorestframework-gi

Bug#956694: Clarification: [RFS] spdlog

2020-06-14 Thread Nilesh Patra
> For sopt, the build fails with the logs same as what Ole sharedearlier - but > looking at them, it seems that spdlog is probably not responsible for the > failure. By same logs, I do not mean the one in the original bug report, but the logs which Ole got after workaround: #953855 cd /build/s

Bug#1058506: marked as pending in golang-github-shenwei356-util

2023-12-25 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1058506 in golang-github-shenwei356-util reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-github-she

Bug#1058558: marked as pending in seqkit

2023-12-25 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1058558 in seqkit reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/seqkit/-/commit/21e6afbbd44d78695e03765e912121dc8

Bug#1056504: python-sparse's autopkg tests fail with Python 3.12

2024-01-13 Thread Nilesh Patra
On Sat, Jan 13, 2024 at 09:03:07AM +0100, Andreas Tille wrote: > This is surely due to the removal of versioneer in upstream commit > 6fca42bc1cd0acea2153b074658b834231a4d00f - but I can't imaginge upstream > simply left the according responsible line > > sparse/__init__.py:from ._version import

Bug#1067957: Maude fails to build on armhf

2024-04-07 Thread Nilesh Patra
On Sun, Apr 07, 2024 at 07:45:33PM +0530, Nilesh Patra wrote: > Hi, > > Maude fails to build on armhf/arm32 arch with: > > In file included from timeManagerSymbol.cc:64: > timeActions.cc: In member function ‘void > TimeManagerSymbol::getTimeS

Bug#1067957: [[maude-bugs]] [EXTERNAL] Re: Maude fails to build on armhf

2024-04-12 Thread Nilesh Patra
Control: severity -1 wishlist Hi, maude has been -rm'ed on 32-bit archs as per https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1068766 So this issue is now moot and I am downgrading the severity. On Thu, Apr 11, 2024 at 07:53:08AM +0200, Andreas Tille wrote: > Hi, > > Am Wed, Apr 10, 2024 at

Bug#1066956: marked as pending in blimps

2024-04-13 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1066956 in blimps reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/blimps/-/commit/e0ea8796d5e68b19beb9fae642b3f35d8

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