Bug#1001657: Ball fails its autopkgtest - how to properly deal with sip files?

2021-12-15 Thread Nilesh Patra
On 15 December 2021 2:36:14 pm IST, Andreas Tille wrote: >Hi Étienne, > >Am Tue, Dec 14, 2021 at 11:13:21PM +0100 schrieb Étienne Mollier: >> Étienne Mollier, on 2021-12-14: >> > However, once the sip file is caught, the package fails to build >> > from source due to various errors in the generate

Bug#1001657: Ball fails its autopkgtest - how to properly deal with sip files?

2021-12-16 Thread Nilesh Patra
On 12/16/21 1:24 PM, Andreas Tille wrote: Hi Étienne, Am Wed, Dec 15, 2021 at 11:23:17PM +0100 schrieb Étienne Mollier: I pushed my changes leading to these errors, but getting the other bugs affecting ball fixed before Christmas might involve undoing the setting of SIP_LIBRARIES in d/rules.

Bug#1001663: r-cran-satellite: autopkgtest failure on ppc64el

2021-12-19 Thread Nilesh Patra
control: fixed -1 1.0.4-2 control: close -1 Sebastian, On Mon, 13 Dec 2021 22:36:21 +0100 Sebastian Ramacher wrote: > Source: r-cran-satellite > Version: 1.0.4-1 Since version 1.0.4-2, tests seem to work good[1,2], and this is the current version in testing. So I am closing this Bug Report.

Bug#1001936: r-cran-rbibutils: Failing autopkgtests on !x86

2021-12-19 Thread Nilesh Patra
Package: r-cran-rbibutils Version: 2.2.4-1 Severity: serious Control: forwarded -1 https://github.com/GeoBosh/rbibutils/issues/8 Dear Maintainer, rbibutils fails its autopkgtests as given below. I have fwded this to upstream. ══ Failed tests ══

Bug#1001936: marked as pending in r-cran-rbibutils

2021-12-20 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1001936 in r-cran-rbibutils reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-cran-rbibutils/-/commit/37cb39c75f7

Bug#1000336: numba: FTBFS with Python 3.10

2021-12-22 Thread Nilesh Patra
Hi all, On Fri, 10 Dec 2021 08:56:49 +0100 Andreas Tille wrote: > dh_auto_clean -O--buildsystem=pybuild > I: pybuild base:237: python3.10 setup.py clean > ... > from distutils import sysconfig > Traceback (most recent call last): > File "/build/numba-0.54.1/setup.py", line 51, in > _gua

Bug#996280: seqan3 fixed in latest release

2021-11-13 Thread Nilesh Patra
control: fixed -1 3.1.0+ds-1 control: close -1 Hi Paul, the latest release of seqan3 seems to work fine: https://qa.debian.org/excuses.php?package=seqan3 Hence closing the bug Regards, Nilesh signature.asc Description: PGP signature

Bug#992676: scipy breaks python-skbio autopkgtest: Unsupported dtype object

2021-11-14 Thread Nilesh Patra
control: fixed -1 upstream On Thu, 7 Oct 2021 00:26:54 +0530 Nilesh Patra wrote: > Reported and pinged upstream here, pinging on the bug to delay > testing removal for a bit > > https://github.com/biocore/scikit-bio/issues/1757 Looks like upstream has fixed this in[1.2] @Andrea

Bug#992676: scipy breaks python-skbio autopkgtest: Unsupported dtype object

2021-11-14 Thread Nilesh Patra
On Thu, 7 Oct 2021 00:26:54 +0530 Nilesh Patra wrote: > Reported and pinged upstream here, pinging on the bug to delay > testing removal for a bit > > https://github.com/biocore/scikit-bio/issues/1757 Looks like it is fixed in upstream commits[1.2] @Andreas would you consider ch

Bug#996123: marked as pending in ruby-api-pagination

2021-11-21 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #996123 in ruby-api-pagination reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-api-pagination/-/commit/c66edab

Bug#997959: git-annex: FTBFS on 32-bit ARM architectures, but built successfully before

2021-11-23 Thread Nilesh Patra
Hi Sean, Richard, On Wed, 27 Oct 2021 12:20:04 -0700 Sean Whitton wrote: > Source: git-annex > Version: 8.20210223-2 > Severity: serious > git-annex recently began to FTBFS on 32-bit ARM architectures, and I am > not really in a position atm to dig deeply into the problem. > [.. log ..] This bu

Bug#1000812: pyrle: import fails on Python 3.10

2021-11-29 Thread Nilesh Patra
On Mon, 29 Nov 2021 12:50:11 + "Rebecca N. Palmer" wrote: > Package: python3-pyrle > Version: 0.0.33-1 > Severity: serious > Control: affects -1 python3-pyranges > > python3-pyrle fails to import on Python 3.10. This causes > python3-pyranges to fail its build-time tests. (python3-pyrle i

Bug#1000812: pyrle: import fails on Python 3.10

2021-12-01 Thread Nilesh Patra
On Mon, 29 Nov 2021 20:35:40 +0100 Andreas Tille wrote: > Am Mon, Nov 29, 2021 at 11:36:33PM +0530 schrieb Nilesh Patra: > > I rebuilt with python3.10, and now error is this. > > Something wrong with pandas? > > As far as I understood we need to wait for pandas 1.3 to work

Bug#1001020: python-anndata: FTBFS with sklearn 1.0.1-1: ModuleNotFoundError: No module named 'sklearn.utils.testing'

2021-12-02 Thread Nilesh Patra
Source: python-anndata Version: 0.7.5+ds-3 Severity: serious Dear Maintainer, python-anndata FTBFS, it probably needs changes with new sklearn. Log pasted below. Regards, Nilesh copying anndata/tests/data/excel.xlsx -> /<>/.pybuild/cpython3_3.9_anndata/build/anndata/tests/data dh_auto_test

Bug#1000812: [RFH] Bug#1000812: pyrle: import fails on Python 3.10

2021-12-04 Thread Nilesh Patra
Dear Python team, Would you have any hint on this? Is it a bug with the python3 package itself? Let me know. Regards, Nilesh On Thu, 2 Dec 2021 12:02:59 +0530 Nilesh Patra wrote: > On Mon, 29 Nov 2021 20:35:40 +0100 Andreas Tille wrote: > > Am Mon, Nov 29, 2021 at 11:36:33PM +053

Bug#1000812: [RFH] Bug#1000812: pyrle: import fails on Python 3.10

2021-12-04 Thread Nilesh Patra
Hi Stefano, On 12/4/21 9:00 PM, Stefano Rivera wrote: Hi Nilesh (2021.12.04_15:15:05_+) Would you have any hint on this? Is it a bug with the python3 package itself? You're waiting for python3-tabulate to be patched for Python 3.10 support. Indeed. I was just being silly as it seems. I

Bug#1008608: r-cran-purrrogress: autopkgtest failure: Error in `is(pb, c("winProgressBar", "tkProgressBar", "txtProgressBar"))`: length(class2) == 1L is not TRUE

2022-03-29 Thread Nilesh Patra
Package: r-cran-purrrogress Version: 0.1.1-3 Severity: serious Dear Maintainer, r-cran-purrrogress is failing its autopkgtest, some of the output is pasted below. | ══ Failed tests | ── Error (apply.R:86:5): with_apply_progress ─

Bug#1008459: qiskit-terra: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" returned exit code 13

2022-03-29 Thread Nilesh Patra
control: reassign -1 src:nbconvert control: forcemerge -1 1008376 control: affects -1 src:qiskit-terra Hi, > ERRORS > > _ ERROR collecting > .pybuild/cpython3_3.9/build/test/python/tools/jupyter/test_notebooks.py _ > Impo

Bug#1008432: marked as pending in golang-github-lucas-clemente-quic-go

2022-04-01 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1008432 in golang-github-lucas-clemente-quic-go reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-git

Bug#994212: r-cran-gprofiler: Obsolete package, replaced with r-cran-gprofiler2

2021-09-13 Thread Nilesh Patra
Package: r-cran-gprofiler Version: 0.7.0-2 Severity: serious X-Debbugs-Cc: nil...@debian.org Dear Maintainer, r-cran-gprofiler has been replaced with r-cran-gprofiler2 and hence the former should be kept out of testing. Cheers, -- System Information: Debian Release: 11.0 APT prefers testing

Bug#994847: r-cran-parsetools: Unmaintained, has been removed from CRAN

2021-09-21 Thread Nilesh Patra
Package: r-cran-parsetools Version: 0.1.3-2 Severity: serious X-Debbugs-Cc: nil...@debian.org Dear Maintainer, r-cran-parsetools has been removed from CRAN[1], and so has its reverse dependencies[2,3] This is currently stalling the migration of r-base, hence filing this bug to remove all three fr

Bug#993269: RFS: e-antic 0.1.8+ds-2

2021-09-22 Thread Nilesh Patra
On Wed, 22 Sept 2021 at 16:49, Torrance, Douglas wrote: > Control: tags -1 pending > > e-antic and its reverse dependencies (macaulay2, normaliz, polymake, > pynac, and > singular) are currently scheduled for autoremoval on 2021-10-12 due to RC > bug > #993269. Peter Green tracked down a fix and

Bug#994847: r-cran-parsetools: Unmaintained, has been removed from CRAN

2021-09-23 Thread Nilesh Patra
Control: severity -1 important Since package still works, decreasing the severity, it should be removed in long run however, if it is never back to CRAN Nilesh signature.asc Description: PGP signature

Bug#994551: libcifpp1: please split off static files to separate package

2021-09-25 Thread Nilesh Patra
Hi Étienne, all, > I took the liberty to implement the change you suggest, and push > to Salsa [1]. I do not see your changes on salsa, the last commit is 3 months old there. Did you forget to push? > Since this is an RC bug which propagates on > several packages, and since it would have to go

Bug#995200: r-bioc-dropletutils: autopkgtest failures

2021-09-27 Thread Nilesh Patra
# Reduce severity severity 995200 important thanks As per discussion here[1], we ignored these two tests for now, hence decreasing the severity, so everything migrates timely. [1]: https://lists.debian.org/debian-r/2021/09/msg00127.html Nilesh signature.asc Description: PGP signature

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-09-29 Thread Nilesh Patra
Hi Dirk, all, On Fri, 9 Apr 2021 15:20:37 -0500 Dirk Eddelbuettel wrote: > On 9 April 2021 at 10:43, Graham Inggs wrote: > | Control: tags -1 + fixed-upstream > | > | Fixed in Matrix upstream svn rev 3376 [1]. > | > | > | [1] > https://r-forge.r-project.org/scm/viewvc.php?view=rev&root=matrix

Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-10-06 Thread Nilesh Patra
This is blocked by https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=992676 Pinged the upstream, pinging here on the bug to delay the removal for a bit Nilesh signature.asc Description: PGP signature

Bug#992676: scipy breaks python-skbio autopkgtest: Unsupported dtype object

2021-10-06 Thread Nilesh Patra
Reported and pinged upstream here, pinging on the bug to delay testing removal for a bit https://github.com/biocore/scikit-bio/issues/1757 Nilesh signature.asc Description: PGP signature

Bug#996427: [Pkg-javascript-devel] Bug#996427: node-mermaid: ships a copy of /usr/share/nodejs/crypto-random-string/*, already in node-crypto-random-string

2021-10-15 Thread Nilesh Patra
On 10/14/21 3:06 AM, Andreas Beckmann wrote: Package: node-mermaid [...] Hi, I think it'd be sensible to unvendor crypto-random-string here. However, after trying to un-vendor -- patch attached with email, The checksum reduces as expected to 26.13.21 -- which is less than the one in the archi

Bug#993042: Fixing with right version

2021-10-26 Thread Nilesh Patra
reopen 993042 fixed 993042 1.6.0-1 close 993042 thanks Closing with the right version Nilesh signature.asc Description: PGP signature

Bug#996734: src:nim: fails to migrate to testing for too long: ftbfs on armhf

2021-10-26 Thread Nilesh Patra
control: severity -1 important Hi Paul, Thanks for reporting On Sun, 17 Oct 2021 21:52:24 +0200 Paul Gevers wrote: If a package is out of sync between unstable and testing for a longer period, this usually means that bugs in the package in testing cannot be fixed via unstable. Additionally, b

Bug#984093: [Debian-med-packaging] libcifpp_1.0.1-4_amd64.changes REJECTED

2021-10-26 Thread Nilesh Patra
Hi, On 27 October 2021 2:54:02 am IST, "Étienne Mollier" wrote: >Maarten, I'm sorry that the round trip to NEW I contributed to >trigger stalled your package to not make it in the end. >On the good news side, now that the package cleared NEW ^ Uhh, sorry but I don't see how this

Bug#996407: marked as pending in proteinortho

2021-10-28 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #996407 in proteinortho reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/proteinortho/-/commit/eaeab34cc6a80d987e134c

Bug#997215: marked as pending in canu

2021-10-28 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997215 in canu reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/canu/-/commit/7b542b7f9bdd75a92412a007a1668224916fae

Bug#997886: marked as pending in prottest

2021-10-29 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997886 in prottest reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/prottest/-/commit/fa47ffe07086565dba469982f81d35

Bug#997408: marked as pending in libatomicqueue

2021-10-29 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997408 in libatomicqueue reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/libatomic-queue/-/commit/75017e1bacb34b763

Bug#997429: ycm-cmake-modules: FTBFS: Could not import extension cmake (exception: cannot import name 'htmlescape' from 'sphinx.util.pycompat' (/usr/lib/python3/dist-packages/sphinx/util/pycompat.py))

2021-10-29 Thread Nilesh Patra
Hi Daniele, On Sat, 23 Oct 2021 22:33:30 +0200 Lucas Nussbaum wrote: Source: ycm-cmake-modules Version: 0.13.0-1 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs I did a fix for this and uploaded. The patch is here in salsa[1] -- if you think it is okay, could you please forwa

Bug#996642: FTBFS with glibc 2.32

2021-10-29 Thread Nilesh Patra
Hi Alastair, On Tue, 26 Oct 2021 at 13:27, Alastair McKinstry < alastair.mckins...@sceal.ie> wrote: > Hi Nilesh > > > > Just uploaded a patched csh now. > > Apologies I was trying to port a later snapshot of csh but ran into > porting issues. > No worries, and thanks for the upload. But one odd

Bug#994443: [R-pkg-team] Bug#994443: marked as done (r-bioc-deseq2: autopkgtest regression)

2021-10-29 Thread Nilesh Patra
control: fixed -1 1.32.0+dfsg-3 Hi Graham, r-bioc-deseq2's autopkgtests started to again pass in testing on 2021-09-29, once r-bioc-tximportdata migrated. However, the autopkgtests in stable continue to fail [1]. I think you are doing something wrong if a change in a package in unstable affe

Bug#997258: marked as pending in tiddit

2021-10-30 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997258 in tiddit reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/tiddit/-/commit/6c81f76b4646ed94a34e1e822b21502cd6

Bug#997122: marked as pending in assembly-stats

2021-10-30 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997122 in assembly-stats reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/assembly-stats/-/commit/f17fb8b611b07cdbdf

Bug#984370: marked as pending in tvc

2021-10-31 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #984370 in tvc reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/tvc/-/commit/9246131486fb4caa01ecb0d996c1936f83f3ea50

Bug#984293: marked as pending in plink

2021-10-31 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #984293 in plink reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/plink/-/commit/d81491dbcd423a1e51f160c3523f897c15f2

Bug#997266: marked as pending in trinculo

2021-10-31 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997266 in trinculo reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/trinculo/-/commit/135b861c44d975b2e87e07755dfb28

Bug#997385: marked as pending in pydicom

2021-11-02 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997385 in pydicom reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/pydicom/-/commit/445ebd3931d2d77c15187bfc05465843

Bug#997209: [Help needed] eegdev: FTBFS: ./doc/examples/library-usage/eegdev_acq.c:214: undefined reference to `rpl_free'

2021-11-02 Thread Nilesh Patra
Hi all, On Sat, 23 Oct 2021 21:11:26 +0200 Lucas Nussbaum wrote: Source: eegdev Version: 0.2-5 Relevant part (hopefully): > /usr/bin/ld: library-usage/eegdev_acq.o: in function `main': > ./doc/examples/library-usage/eegdev_acq.c:214: undefined reference to `rpl_free' > /usr/bin/ld: ./doc/examp

Bug#997209: marked as pending in eegdev

2021-11-02 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997209 in eegdev reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/eegdev/-/commit/a7bdb9ff56bf49b12b982d8a19d56fbe08

Bug#997772: python-cogent: FTBFS: You must configure the bibtex_bibfiles setting

2021-11-03 Thread Nilesh Patra
On 11/3/21 1:30 PM, Andreas Tille wrote: Control: tags -1 pending Hi Stuart, Am Wed, Nov 03, 2021 at 09:43:40AM +1100 schrieb Stuart Prescott: Extension error: You must configure the bibtex_bibfiles setting make[2]: *** [Makefile:40: html] Error 2 this is sphinxcontrib-bibtex saying that you

Bug#994443: [R-pkg-team] Bug#994443: Bug#994443: marked as done (r-bioc-deseq2: autopkgtest regression)

2021-11-04 Thread Nilesh Patra
control: reassign -1 dh-r control: severity -1 important control: retitle -1 pkg-r-autopkgtest: please use the same number of packages as release, and not base it on apt lists Hi Graham, On Wed, 3 Nov 2021 10:52:04 +0200 Graham Inggs wrote:> On Fri, 29 Oct 2021 at 21:15, Nilesh Patra wr

Bug#996138: marked as pending in ruby-bio

2021-11-05 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #996138 in ruby-bio reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-bio/-/commit/ee43a3bf5448ee0e406568189b595

Bug#998237: marked as pending in arb

2021-11-05 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #998237 in arb reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/arb/-/commit/a0a2f008b40f85ba0ba71a2ce25ce9db72b866d7

Bug#998287: r-cran-pdftools: autopkgtest failure: nrow(fonts) not equal to 3

2021-11-08 Thread Nilesh Patra
Hi Paul, On Mon, 1 Nov 2021 21:11:54 +0100 Paul Gevers wrote: Source: r-cran-pdftools Version: 3.0.1-1 X-Debbugs-CC: debian...@lists.debian.org I could reproduce this (relevant part below). *But*, it passes when I try run it locally with (i) "bash ./debian/tests/run-unit-tests" --> OK and

Bug#998287: marked as pending in r-cran-pdftools

2021-11-08 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #998287 in r-cran-pdftools reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-cran-pdftools/-/commit/a79bc6ac9ac632

Bug#998287: r-cran-pdftools: autopkgtest failure: nrow(fonts) not equal to 3

2021-11-08 Thread Nilesh Patra
Hi Paul, On Mon, 8 Nov 2021 21:51:01 +0100 Paul Gevers wrote:> > Since this does not really look like a bug with this package, but rather > something very specific to "autopkgtest" or "schroot" environment is > triggering this, > I need your inputs to tackle this. I'd say the opposite. schroo

Bug#997639: marked as pending in python-keepalive

2021-11-09 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #997639 in python-keepalive reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-keepalive/-/commit/13

Bug#1022307: python-biopython: FTBFS: mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory

2022-10-24 Thread Nilesh Patra
Control: clone -1 -2 Control: reassign -2 t-coffee 13.45.0.4846264+dfsg-1 Control: severity -2 serious Control: retitle -2 t-coffee regression -- segfaults for cases that files that worked with previous release t-coffee is breaking python-biopython build. I ran the test in question w/ gdb and I

Bug#1022307: python-biopython: FTBFS: mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory

2022-10-24 Thread Nilesh Patra
On Mon, Oct 24, 2022 at 10:18:04AM +0200, Andreas Tille wrote: > I've recently upgraded t-coffee after a longish discussion with Hamid > (in CC) who found out that t-coffee should switch off optimisation > (which is also the case in the binaries provided upstream). Yeah, I saw tracker.d.o and also

Bug#1023026: gavodachs: Fails it autopkgtest

2022-10-29 Thread Nilesh Patra
Source: gavodachs Version: 2.6+dfsg-1.1 Severity: serious X-Debbugs-Cc: oleb...@debian.org Hi gavodachs fails it's autopkgtest with permission errors: | createuser: error: creation of new role failed: ERROR: role "dachsroot" already exists | *** Error: While executing DB query: | | CREATE OR

Bug#1022394: python-trustme: FTBFS: make: *** [debian/rules:4: clean] Error 1

2022-10-29 Thread Nilesh Patra
es "X-Python3-Version: all", fixes FTBFS (Closes: #1022394) - - -- Nilesh Patra Sat, 29 Oct 2022 20:58:46 +0530 - python-trustme (0.9.0-1) unstable; urgency=medium * New upstream release. diff -Nru python-trustme-0.9.0/debian/control python-trustme-0.9.0/debian/control --- pytho

Bug#1022332: marked as pending in rails

2022-10-29 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1022332 in rails reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/rails/-/commit/e888478fcfe6ada1b0f50b7ab3f34caad6

Bug#1019613: ruby-capybara: FTBFS with ruby3.1: ERROR: Test "ruby3.1" failed: Failure/Error: raise LoadError, 'Capybara is unable to load `puma` for its server, please add `puma` to your project or sp

2022-11-03 Thread Nilesh Patra
Control: tags -1 moreinfo It builds fine for me locally. Could you please try a re-build? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1020135: numpy: FTBFS: AttributeError: 'UnixCCompiler' object has no attribute 'cxx_compiler'

2022-11-04 Thread Nilesh Patra
Control: tags -1 patch This was as simple as a reorder (again same as many py packages) It gets numpy building for me locally atleast. Please consider applying. diff --git a/setup.py b/setup.py index 9df459d..5bf727b 100755 --- a/setup.py +++ b/setup.py @@ -75,8 +75,8 @@ # Its presence/absence i

Bug#1012771: python-bids-validator: autopkgtest regression in testing

2022-06-24 Thread Nilesh Patra
Control: fixed -1 1.9.4-1 Control: close -1 fixed in latest upatream. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1006989: nim: incompatible with OpenSSL 3.0

2022-06-25 Thread Nilesh Patra
Hi Federico, On Wed, 9 Mar 2022 18:04:36 -0800 Steve Langasek wrote: > Source: nim > $ ./bin/nimble > could not import: SSL_get_peer_certificate > $ > > libssl3 is currently in experimental and expected to be the version of > OpenSSL shipped with the next version of Debian. Please work with u

Bug#1013984: r-cran-v8: configure assumes V8_COMPRESS_POINTERS=true but it is not

2022-07-05 Thread Nilesh Patra
Control: severity -1 important On Tue, 28 Jun 2022 15:23:08 +0200 =?utf-8?b?SsOpcsOpbXkgTGFs?= wrote: > Source: r-cran-v8 > Version: 4.2.0+dfsg-1 > Severity: serious > Tags: ftbfs > Justification: fails to build from source (but built successfully in the past) > > When building r-cran-v8 agains

Bug#1008452: marked as pending in python-streamz

2022-07-10 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1008452 in python-streamz reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-streamz/-/commit/0a3bd

Bug#1013569: marked as pending in nitime

2022-07-11 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1013569 in nitime reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/nitime/-/commit/7a00bbef2ca98f1fdb2b977dbe9355cc9

Bug#1014486: python-etelemetry: autopkgtest regression on amd64; arm64; armhf; i386; ppc64el; s390x: pytest7 migration - non-zero exit status 1

2022-07-12 Thread Nilesh Patra
Hi Pollo, On Wed, 6 Jul 2022 14:39:13 -0400 =?UTF-8?Q?Louis-Philippe_V=c3=a9ronneau?= wrote: > Source: python-etelemetry > Version: 0.3.0-1 > Control: affects -1 src:pytest > [...] > You can find the CI logs here: > https://ci.debian.net/packages/d/python-etelemetry/ Nitpicking: The above link

Bug#1012336: dcm2niix: autopkgtest failure on s390x: 1 computed checksum did NOT match

2022-07-12 Thread Nilesh Patra
Bilal, Since you added autopkgtest for it, can you take a look and fix? Thanks. On Sat, 4 Jun 2022 21:12:59 +0200 Paul Gevers wrote: > Source: dcm2niix > Version: 1.0.20211006-4 > Severity: serious > User: debian...@lists.debian.org > Usertags: fails-always > > Dear maintainer(s), > > You rec

Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-10 Thread Nilesh Patra
Hi, Sorry to bother you over this again, but would you have any idea? I'd be OK with a workaround if you don't have the bandwidth at the moment, but this seems to come from coffee related modifications only. On Sun, 7 Aug 2022 11:42:45 +0530 Nilesh Patra wrote: > On 8/7/22 11:04 A

Bug#1003165: scikit-learn testing migration

2022-08-13 Thread Nilesh Patra
On 8/13/22 13:34, Andreas Tille wrote: The drawback of this solution is that we will not get any warning for new *potentially more important* issues since all test failures will be ignored now. For me this is outweighted by the advantage that we can present upstream a full log of all issues in c

Bug#1017087: meson: All ldc related packages FTBFS with 0.63.1-1

2022-08-13 Thread Nilesh Patra
Package: meson Version: 0.63.1-1 Severity: serious X-Debbugs-Cc: jpakk...@gmail.com Hi, On building any d-lang package (which uses ldc in build) with new meson, it goes FTBFS with errors similar to the one pasted below. This was working fine just minutes before (with meson 0.63.0) Tried with pac

Bug#1017237: sambamba: FTBFS: ../meson.build:9:0: ERROR: Unable to detect linker for compiler `ldc2 -L=--version /tmp/tmp1izbdod0.d -Wl,-z,relro -O -g -release -wi`

2022-08-19 Thread Nilesh Patra
Control: reassign -1 meson 0.63.1-1 Control: forcemerge -1 1017087 Control: affects 1017087 + sambamba This is due to bug #1017087 in meson itself which I reported a few days ago. I am re-assigning, merging and adding in an affects. On Sun, 14 Aug 2022 09:51:09 +0200 Lucas Nussbaum wrote: > Sou

Bug#1017292: r-cran-av: FTBFS: Error: package or namespace load failed for ‘av’ in dyn.load(file, DLLpath = DLLpath, ...):

2022-08-20 Thread Nilesh Patra
Control: fixed -1 0.8.0+dfsg-1 Control: close -1 This seems to build ok now https://buildd.debian.org/status/fetch.php?pkg=r-cran-av&arch=amd64&ver=0.8.0%2Bdfsg-1&stamp=1660914888&raw=0 closing. On Sun, 14 Aug 2022 09:50:58 +0200 Lucas Nussbaum wrote: > Source: r-cran-av > Version: 0

Bug#1016625: bart-cuda: FTBFS: redefinition of 'constexpr const _Tp std::integral_constant<_Tp, __v>::value'

2022-08-23 Thread Nilesh Patra
On Tue, Aug 23, 2022 at 07:00:44PM +0200, Martin Uecker wrote: > > I think I fixed this. At least it compiles locally in > a sid pbuilder environment, but I needed to build-depend > on gcc-10. gcc-10 will be removed from the archive some day, so this cannot be a permanent fix. -- Best, Nilesh

Bug#1016625: bart-cuda: FTBFS: redefinition of 'constexpr const _Tp std::integral_constant<_Tp, __v>::value'

2022-08-23 Thread Nilesh Patra
Control: reassign -1 nvidia-cuda-toolkit/11.4.3-4 Control: retitle -1 Please update nvidia-cuda-toolkit to 11.5.1 or later On 8/23/22 23:58, Martin Uecker wrote: Am Dienstag, den 23.08.2022, 23:45 +0530 schrieb Nilesh Patra: On Tue, Aug 23, 2022 at 07:00:44PM +0200, Martin Uecker wrote: I

Bug#1017247: golang-github-gatherstars-com-jwz: FTBFS: dh_auto_test: error: cd _build && go test -vet=off -v -p 8 github.com/gatherstars-com/jwz github.com/gatherstars-com/jwz/examples/visualize retur

2022-08-25 Thread Nilesh Patra
Hi Robin, This bug is causing an autoremoval warning for aerc. There does not seem to be a fix upstream about this. I am not sure what exactly is triggering this, but my hunch is it might be related to change in sort function with golang 1.19. (This works fine with go-1.18) Can I ask you to take

Bug#1017483: marked as pending in loguru

2022-08-25 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1017483 in loguru reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/loguru/-/commit/e6c67758dfdefeeaa51c6

Bug#1017247: golang-github-gatherstars-com-jwz: FTBFS: dh_auto_test: error: cd _build && go test -vet=off -v -p 8 github.com/gatherstars-com/jwz github.com/gatherstars-com/jwz/examples/visualize retur

2022-08-27 Thread Nilesh Patra
On 8/25/22 22:47, Robin Jarry wrote: Hey Nilesh, Nilesh Patra, Aug 25, 2022 at 14:20: This bug is causing an autoremoval warning for aerc. There does not seem to be a fix upstream about this. I am not sure what exactly is triggering this, but my hunch is it might be related to change in sort

Bug#1017247: golang-github-gatherstars-com-jwz: FTBFS: dh_auto_test: error: cd _build && go test -vet=off -v -p 8 github.com/gatherstars-com/jwz github.com/gatherstars-com/jwz/examples/visualize retur

2022-08-27 Thread Nilesh Patra
On 8/27/22 15:32, Nilesh Patra wrote: On 8/25/22 22:47, Robin Jarry wrote: Hey Nilesh, Nilesh Patra, Aug 25, 2022 at 14:20: This bug is causing an autoremoval warning for aerc. There does not seem to be a fix upstream about this. I am not sure what exactly is triggering this, but my hunch is

Bug#1012219: Please adjust StanHeaders to new version of (one)tbb

2022-09-03 Thread Nilesh Patra
Hi all, On 9/3/22 22:06, Benjamin K Goodrich wrote: Sorry for the late reply. I am told that StanHeaders can be built successfully with oneTBB by setting environmental variables like TBB_INC and TBB_LIB. On CRAN, we would like to use the version of TBB that comes with the RcppParallel package [.

Bug#1015088: [Pkg-nagios-devel] Bug#1015088: icingadb: FTBFS: ../pkg/com/bulker.go:30:16: internal compiler error: assertion failed

2022-07-17 Thread Nilesh Patra
Anthony, Shengjing, Could you consider taking a look if you have some b/w available? On Sat, 16 Jul 2022 16:16:44 +0200 Sebastiaan Couwenberg wrote: > reassign 1015088 src:golang-1.18 > found 1015088 golang-1.18/1.18.4-1 > affects 1015088 src:icingadb > thanks > > On 7/16/22 15:21, Lucas Nussb

Bug#1015088: [Pkg-nagios-devel] Bug#1015088: icingadb: FTBFS: ../pkg/com/bulker.go:30:16: internal compiler error: assertion failed

2022-07-17 Thread Nilesh Patra
On Sun, Jul 17, 2022 at 06:44:08PM +0800, Shengjing Zhu wrote: > On Sun, Jul 17, 2022 at 6:09 PM Nilesh Patra wrote: > > > > Anthony, Shengjing, > > > > Could you consider taking a look if you have some b/w available? > > > > The issue has already been forw

Bug#1015136: q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.10 returned exit code 13

2022-07-19 Thread Nilesh Patra
Hi, I think at this point we *really* need to update qiime and friends. I am finding it hard to keep q2cli 'limping' by cherry-picking changes from upstream. If no-one volunteers, I will update qiime and q2-* in coming days/weeks. On Sat, 16 Jul 2022 15:54:59 +0200 Lucas Nussbaum wrote: > Sou

Bug#1003165: scikit-learn testing migration

2022-07-20 Thread Nilesh Patra
On 7/20/22 4:50 PM, Andreas Tille wrote: Hi, Am Sat, Jul 16, 2022 at 05:58:33PM +0200 schrieb julien.pu...@gmail.com: [1]: https://buildd.debian.org/status/fetch.php?pkg=scikit-learn&arch=armel&ver=1.1.1-1&stamp=1653343638&raw=0 I would open a bug report to upstream pointing to that log, and

Bug#1014306: crun - seriously out of date

2022-07-24 Thread Nilesh Patra
On Fri, 22 Jul 2022 15:43:56 +0200 Faidon Liambotis wrote: > On Sun, Jul 03, 2022 at 09:20:37PM +0200, Bastian Blank wrote: > > crun was not uploaded since before the release of Debian 11. It is now > > seriously out of date and even fails hard as root, see #1012053. > > I built 1.4.5 using the

Bug#1013058: uncalled: ftbfs with GCC-12

2022-07-25 Thread Nilesh Patra
close -1 Can't repro. Builds fine as seem on salsa CI as well, closing. https://salsa.debian.org/med-team/uncalled/-/jobs/3035453 On Thu, 16 Jun 2022 12:14:39 + Matthias Klose wrote: > Package: src:uncalled > Version: 2.2+ds1-1 > Severity: normal > Tags: sid bookworm > User: debian-

Bug#1012482: rdflib: URLInputSource can be abused to retrieve arbitrary documents if used naïvely

2022-07-31 Thread Nilesh Patra
Hi Andrius, On Wed, 8 Jun 2022 08:59:13 +0300 Andrius Merkys wrote: > Hello, > > rdflib will attempt to resolve any URL in @context in POSTed JSON-LD > messages, leading to various probing and DDoS vectors, see the upstream > discussion [1]. > > [1] https://github.com/RDFLib/rdflib/issues/1844

Bug#1016357: Fails tests with insufficient network connectivity

2022-08-01 Thread Nilesh Patra
Control: severity -1 normal On Fri, 29 Jul 2022 15:11:10 -0700 Sven Mueller wrote: > Package: golang-github-pion-turn.v2 > Version: 2.0.8-2 > Severity: Serious > > The package fails tests (see log of failing test below) when run on a > machine with limited network (in this case: Can only reach

Bug#1002227: Move to templexxx-xorsimd? (Was: Bug#1002227: golang-github-templexxx-xor: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && go test -vet=off -v -p 4 github.com/templexxx/xor returne

2022-08-03 Thread Nilesh Patra
This bug is causing and has caused autoremovals unfortunately. Taking a look at upstream, this seems abandoned and upstream moved to xorsimd[1] instead. On brief testing, tests seem to pass for new package and botht the reverse-deps for templexxx-xor have also migrated to new package in later upst

Bug#1002227: Move to templexxx-xorsimd? (Was: Bug#1002227: golang-github-templexxx-xor: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && go test -vet=off -v -p 4 github.com/templexxx/xor returne

2022-08-04 Thread Nilesh Patra
Control: severity -1 important I am uploading a new revision shortly disabling this test so it allows revdeps to migrate atleast most which have nothing to do with the failing function test in question. Will go ahead with packaging xorsimd in next weeks (occupied with RL) unless no-one beats me t

Bug#1016454: megadepth: autopkgtest failure on s390x: segmentation fault

2022-08-06 Thread Nilesh Patra
Hi Bilal, You added in autopkgtests for this one -- could you please take a look? On Sun, 31 Jul 2022 22:06:50 +0200 Paul Gevers wrote: > Source: megadepth > Version: 1.2.0-3 > Severity: serious > User: debian...@lists.debian.org > Usertags: fails-always > > Dear maintainer(s), > > You recentl

Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-06 Thread Nilesh Patra
Package: node-sockjs Version: 0.3.24+~0.3.33-1 Severity: serious X-Debbugs-Cc: e...@ericebrown.com Hi, On running shiny-server with 0.3.24+~0.3.33-1 it chokes with: | [2022-08-06T04:59:03.613] [ERROR] shiny-server - Uncaught exception: TypeError: Cannot read properties of undefined (reading 'ad

Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-06 Thread Nilesh Patra
Yadd, Since you added in coffeescript patch for this package, I'd highly appreciate if you could consider taking a look. On Sat, 06 Aug 2022 17:54:13 +0530 Nilesh Patra wrote: > Package: node-sockjs > Version: 0.3.24+~0.3.33-1 > Severity: serious > X-Debbugs-Cc: e...@erice

Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-06 Thread Nilesh Patra
On 8/7/22 11:04 AM, Yadd wrote: On 06/08/2022 14:59, Nilesh Patra wrote: Yadd, Since you added in coffeescript patch for this package, I'd highly appreciate if you could consider taking a look. Hi, is there a test somewhere to see this error ? I'm not aware of any specific test

Bug#1016625: bart-cuda: FTBFS: redefinition of 'constexpr const _Tp std::integral_constant<_Tp, __v>::value'

2022-08-07 Thread Nilesh Patra
Hi Martin, [CC'ing both your email addresses since I don't know which one you use] Since this is your package, could you consider taking a look please? On Thu, 04 Aug 2022 04:31:30 +0200 Andreas Beckmann wrote: > Source: bart-cuda > Version: 0.7.00-5 > Severity: serious > Tags: ftbfs > Justific

Bug#1016742: marked as pending in libcereal

2022-08-07 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1016742 in libcereal reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/libcereal/-/commit/576d2ba644d9c6a0b11e267b57d

Bug#1008421: golang-github-traefik-yaegi: FTBFS: dh_auto_test: error: cd _build && go test -vet=off -v -p 8 -timeout 1h github.com/traefik/yaegi github.com/traefik/yaegi/cmd/yaegi github.com/traefik/y

2022-04-14 Thread Nilesh Patra
Thanks Lucas, for reporting this bug! As it looks, yaegi currently does not support go-1.18 properly[1] - atleast support for generics is missing. I could maybe circumvent these tests somehow but that does not look the most optimal thing to do atleast for now. So I will get the ball rolling once

Bug#1009462: I think we can remove pyqi (Was: Bug#1009462: pyqi: FTBFS: Only Python 3.8 and 3.9 are supported.E: pybuild pybuild:369: configure: plugin distutils failed with: exit code=1: python3.10 s

2022-04-15 Thread Nilesh Patra
On Wed, Apr 13, 2022 at 09:49:35AM +0200, Andreas Tille wrote: > Hi, > > if I remember correctly pyqi was packaged for qiime 1.x. > It has no rdepends any more and I think we should remove it. I got a few spare minutes so I fixed the RC bug. > Does anybody think differently? It is always good t

Bug#1009462: marked as pending in pyqi

2022-04-15 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1009462 in pyqi reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/pyqi/-/commit/4356ff2edb630d74a522bc19f0223168143d1

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