Bug#989399: nauty FTCBFS -- multiple reasons

2021-06-03 Thread Nilesh Patra
Hello Andrius On Thu, 3 Jun 2021 at 13:10, Andrius Merkys wrote: > Hi Nilesh, > > On 2021-06-02 19:29, Nilesh Patra wrote: > > Nauty fails to cross build due to two reasons: > > > > 1. It uses AC_RUN_IFELSE testing which cannot heppen during cross build &g

Bug#952285: marked as pending in prometheus-mongodb-exporter

2020-05-17 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #952285 in prometheus-mongodb-exporter reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/prometheus-mongodb-ex

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-05-18 Thread Nilesh Patra
On Mon, 18 May 2020 at 12:39, Andreas Tille wrote: > > I've merged this and tried a test build including running autopkgtest in > my pbuilder environment. Unfortunately the latter test is now failing with > > ... > autopkgtest [06:48:10]: test atac-unit-test: [--- > Rewriting

Bug#973747: marked as pending in python-firehose

2020-12-26 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #973747 in python-firehose reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-firehose/-/commit/405f

Bug#978662: apertium-cy-en: autopkgtest failure

2021-01-03 Thread Nilesh Patra
Hi Tino, On Tue, 29 Dec 2020 23:21:15 +0100 Tino Didriksen wrote: > This is a chicken-and-egg problem that should solve itself. New apertium > 3.7.1 can't migrate until apertium-cy-en is fixed, but fixed apertium-cy-en > won't build correctly with existing apertium 3.6.1. On declaring hard depen

Bug#978266: marked as pending in pytest-qt

2021-01-06 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #978266 in pytest-qt reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/pytest-qt/-/commit/9777edffacfcc7b0

Bug#978288: marked as pending in pytest-mock

2021-01-20 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #978288 in pytest-mock reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/pytest-mock/-/commit/c214cc4eeca9

Bug#980673: marked as pending in python-babel

2021-01-21 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #980673 in python-babel reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-babel/-/commit/1d6c9a783f

Bug#980852: marked as pending in ciftilib

2021-01-23 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #980852 in ciftilib reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/ciftilib/-/commit/312b522fa41bb55796f832b078bcc7

Bug#978275: marked as pending in python-pluggy

2021-01-25 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #978275 in python-pluggy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-pluggy/-/commit/f5b53b64

Bug#983723: Additional issues on arm64 and mips64el (Was: Bug#983723: rna-star FTBFS on ppc64el due to -march=native)

2021-03-01 Thread Nilesh Patra
Hi, On Mon, 1 Mar, 2021, 6:13 pm Andreas Tille, wrote: > Hi, > > besides this on arm64[1] and mips64el: > > ... > cd opal && \ > g++ -c -O3 -std=c++11 -march=native opal.cpp > opal.cpp:9:10: fatal error: immintrin.h: No such file or directory > 9 | #include // AVX2 and lower > |

Bug#984854: seqsero: Seqsero invokes python2.7 during execution

2021-03-09 Thread Nilesh Patra
Package: seqsero Version: 1.0.1+dfsg-2 Severity: serious X-Debbugs-Cc: nil...@debian.org Dear Maintainer, Seqsero seems to invoke python2.7 during execution, for example here[1] Similar invocation statements have _not_ been patched out yet in the d/patches/2to3.patch, probably affecting the funct

Bug#985061: fsm-lite -- Passes -msse4.2: Baseline violation on amd64

2021-03-12 Thread Nilesh Patra
Package: fsm-lite Version: 1.0-4 Severity: serious X-Debbugs-Cc: nil...@debian.org Dear Maintainer, fsm-lite forcibly passes -msse4.2 on amd54, which is a baseline violation. Please compile for either all SIMD levels from sse4.2 down to base, and use a selector like simd-dispatch [1] [1]: https

Bug#984854: fixed in seqsero 1.0.1+dfsg-3

2021-03-17 Thread Nilesh Patra
Pinging the bug in case the autoremoval warning causes a problem

Bug#986256: simka: flaky amd64 autopkgtest: regularly times out after 2:47 h

2021-04-02 Thread Nilesh Patra
Hi, On Thu, 1 Apr 2021 20:53:00 +0200 Paul Gevers wrote: > Your package has an autopkgtest, great. However, I looked into > the history of your autopkgtest [1] and I noticed version 1.5.3-2 fails > regularly on amd64, while sporadically a rerun passes. I copied some of > the output at the botto

Bug#986256: [RFS] simka: test failure common denominator ci-worker13

2021-04-05 Thread Nilesh Patra
On 4/6/21 12:29 AM, Étienne Mollier wrote: > Hi Paul, Hi Nilesh, > feel also free to grant dm rights if you feel > appropriate. Done signature.asc Description: OpenPGP digital signature

Bug#972773: marked as pending in python-ciso8601

2020-10-25 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #972773 in python-ciso8601 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-ciso8601/-/commit/82579f4393b324e3

Bug#973018: marked as pending in python-etelemetry

2020-11-05 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #973018 in python-etelemetry reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-etelemetry/-/commit/303123902ec7

Bug#978279: marked as pending in afew

2021-01-28 Thread Nilesh Patra
Hi Håvard Looks like you've fixed this, but not uploaded yet. Is there anything missing, or should I upload this one? Regards, Nilesh On Thu, 14 Jan 2021 11:09:50 + =?UTF-8?B?SMOldmFyZCBGbGFnZXQgQWFzZW4=?= wrote: > Control: tag -1 pending > > Hello, > > Bug #978279 in afew reported by you

Bug#978279: marked as pending in afew

2021-01-28 Thread Nilesh Patra
On Thu, 28 Jan 2021 at 19:31, Håvard Flaget Aasen wrote: > Hi Nilesh > > The reason I haven't uploaded is because I'm not a DD, so I don't have > the necessary permissions. > I see that you are a DM, If you agree to add yourself to the uploader's field, I'll happily grant permissions. > I beli

Bug#978279: marked as pending in afew

2021-01-28 Thread Nilesh Patra
On Thu, 28 Jan 2021 at 20:48, Håvard Flaget Aasen wrote: > > > > > I see that you are a DM, If you agree to add yourself to the uploader's > > field, I'll happily grant permissions. > > Thanks! I updated, and included myself in the uploader's field. > Done, please upload :-)

Bug#971681: r-cran-openmx regression on arm, will not migrate to testing due to failing autopkgtests

2021-01-30 Thread Nilesh Patra
Hi Joshua, Many thanks for fixes, The freeze has started and soft freeze time is near as well.(2 weeks from now) OpenMx has removals of a bunch of packages from testing. Hence, please consider doing a new upstream release if it looks okay to you. Thanks and regards, Nilesh signature.asc Des

Bug#978364: apertium-ukr: FTBFS: Error: Invalid dictionary (hint: the left side of an entry is empty)

2021-01-31 Thread Nilesh Patra
Hi Tino, On Tue, 5 Jan 2021 01:13:56 +0100 Tino Didriksen wrote: > apertium-ukr should be removed from Debian. The pair that needed it has > been upgraded to bundle the required version instead: If you agree, can I retitle and reassign to file in a removal bug for apertium-ukr, then? Also, I do

Bug#976735: spyder needs source upload for Python 3.9 transition

2021-02-01 Thread Nilesh Patra
Hi Julian, On Sun, 13 Dec 2020 06:58:29 + Julian Gilbey wrote: > On Mon, Dec 07, 2020 at 05:38:26PM +0200, Adrian Bunk wrote: > > Package: spyder > > Version: 3.3.6+dfsg1-5 > > Severity: serious > > > > Since binNMUs are not possible for binary-all packages, > > a source upload is needed for

Bug#976735: spyder needs source upload for Python 3.9 transition

2021-02-01 Thread Nilesh Patra
Hi Julian, On Sun, 13 Dec 2020 06:58:29 + Julian Gilbey wrote: > On Mon, Dec 07, 2020 at 05:38:26PM +0200, Adrian Bunk wrote: > > Package: spyder > > Version: 3.3.6+dfsg1-5 > > Severity: serious > > > > Since binNMUs are not possible for binary-all packages, > > a source upload is needed for

Bug#976735: spyder needs source upload for Python 3.9 transition

2021-02-01 Thread Nilesh Patra
Hi Julian I read through the rest of the thread. On Mon, 1 Feb, 2021, 6:31 pm Julian Gilbey, wrote: > I have a package of Spyder 4 waiting to upload, but it requires five > packages to be accepted into unstable from NEW first (pyls-server, > pyls-black, pyls-spyder, abydos, textdistance); once

Bug#957828: Please consider uploading sparskit (was: Re: sparskit: ftbfs with GCC-10)

2021-02-02 Thread Nilesh Patra
Hi Etienne, On Fri, 15 Jan 2021 13:16:30 +0100 =?utf-8?Q?=C3=89tienne?= Mollier wrote: > Control: tag -1 patch > > Hi, > > I prepared a targeted patch to fix Gcc-10 issues with sparskit, > and ran the embedded ./dotests to make sure it did not introduce > any errors. This fixes the argument typ

Bug#976735: fixed in spyder 4.2.1+dfsg1-1

2021-02-05 Thread Nilesh Patra
Thank you, Julien! :-) On Fri, 05 Feb 2021 14:49:37 + Debian FTP Masters wrote: > Source: spyder > Source-Version: 4.2.1+dfsg1-1 > Done: Julian Gilbey > > We believe that the bug you reported is fixed in the latest version of > spyder, which is due to be installed in the Debian FTP archive

Bug#982169: marked as pending in biomaj3-process

2021-02-07 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #982169 in biomaj3-process reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/biomaj3-process/-/commit/f1e8f5d38eea1d73

Bug#982168: marked as pending in biomaj3-daemon

2021-02-07 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #982168 in biomaj3-daemon reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/biomaj3-daemon/-/commit/63f5967099b47c4e6d

Bug#981876: gdpc: flaky autopkgtest on i386

2021-02-07 Thread Nilesh Patra
Control: Severity -1 important Hi Etienne, Thanks for filing ROM --RM. I'm lowering the severity so it migrates to testing. Nilesh

Bug#880316: teem: FTBFS: Test failures

2021-02-07 Thread Nilesh Patra
Control: severity -1 minor It looks like this is fixed: https://buildd.debian.org/status/fetch.php?pkg=teem&arch=amd64&ver=1.12.0%7E20160122-4&stamp=1606151763&raw=0 Hence lowering the severity On Mon, 30 Oct 2017 21:10:20 +0100 Lucas Nussbaum wrote: > Source: teem > Version: 1.12.0~20160122-2

Bug#977067: Bug#977060: cwltool FTBFS with pytest 6

2021-02-11 Thread Nilesh Patra
On Sun, 7 Feb 2021 22:08:58 +0100 =?utf-8?Q?=C3=89tienne?= Mollier wrote: > I tried to reproduce the bug by building igdiscover 0.11-3 using > sbuild in a clean Sid chroot which did include pytest 6: > > $ schroot -c unstable-amd64-sbuild -d / \ > -- apt-cache show python3-pytest \ > | grep Versi

Bug#965114: golang-github-shenwei356-bwt: FTBFS: unsatisfiable build dependency

2020-11-10 Thread Nilesh Patra
Control: severity -1 minor On Tue, 10 Nov 2020 21:39:40 +0530 Nilesh Patra wrote: > sbuild (Debian sbuild) 0.79.1 (22 April 2020) on debian > > ++ > | golang-github-shenwei356-bwt 0.0

Bug#975788: marked as pending in python-babel

2020-11-26 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #975788 in python-babel reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-babel/-/commit/7f57b7ccd2

Bug#976105: marked as pending in golang-github-tidwall-buntdb

2020-11-30 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #976105 in golang-github-tidwall-buntdb reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-github-tidwa

Bug#975467: marked as pending in psignifit

2020-12-03 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #975467 in psignifit reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/psignifit/-/commit/235a7fc6b9b5b0ce7e891a36127f

Bug#976497: python-parasail: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

2020-12-06 Thread Nilesh Patra
Relevant part (hopefully): > > dpkg-buildpackage > > - > > > > Command: dpkg-buildpackage -us -uc -sa -rfakeroot > > dpkg-buildpackage: info: source package python-parasail > > dpkg-buildpackage: info: source version 1.2.1-1 > > dpkg-buildpackage: inf

Bug#976497: python-parasail: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

2020-12-06 Thread Nilesh Patra
; Relevant part (hopefully): >> dpkg-buildpackage >> - >> >> Command: dpkg-buildpackage -us -uc -sa -rfakeroot >> dpkg-buildpackage: info: source package python-parasail >> dpkg-buildpackage: info: source version 1.2.1-1 >> dpkg-buildpackage: in

Bug#976497: python-parasail: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13 Inbox [Imap]/Sent

2020-12-06 Thread Nilesh Patra
Control: forwarded -1 https://github.com/jeffdaily/parasail-python/issues/56 Forwarded the issue upstream, hopefully we will have a fix soonish with arm64 becoming more popular.

Bug#976907: golang-github-boltdb-bolt: FTBFS on ppc64el (arch:all-only src pkg): dh_auto_test: error: cd obj-powerpc64le-linux-gnu && go test -vet=off -v -p 160 -short github.com/boltdb/bolt github.co

2020-12-13 Thread Nilesh Patra
Hi Andreas, On Sat, 12 Dec 2020 18:48:52 +0100 Andreas Henriksson wrote: > Hello again, > > So after wasting my time here I finally realized that apparently > boltdb is archived upstream. It will not receive any fixes. > > Apparently golang-github-coreos-bbolt is a maintained feature-extended > f

Bug#973099: marked as pending in python-boltons

2020-12-15 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #973099 in python-boltons reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-boltons/-/commit/67b59b

Bug#976578: marked as pending in golang-github-labstack-gommon

2020-12-16 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #976578 in golang-github-labstack-gommon reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-github-labs

Bug#977308: shasta: hardcoded dependencies on boost 1.71

2020-12-18 Thread Nilesh Patra
Hi Andreas, On Fri, 18 Dec 2020 at 15:53, Andreas Tille wrote: > Control: tags -1 help > > Hi, > > I tried to fix the issue by making dh_shlibdeps work. In > > > https://salsa.debian.org/med-team/shasta/-/commit/366edd672be428cc553b34b99bc614aa698175d6 > > I documented what I tried but all fail

Bug#1000435: Matplotlib crashes on mips64el in lines.py

2022-01-25 Thread Nilesh Patra
Sandro, Looks like Yunqiang has a patch that fixed the problem. Can you add this patch and upload? Would you allow them to NMU? (See the mail below) Thanks, -Nilesh On Tue, 25 Jan 2022 16:58:34 +0800 Yunqiang Su wrote: > On Sat, 22 Jan 2022 18:23:13 +0800 YunQiang Su wrote: > > On Sat, 22 Jan

Bug#1003979: arachne-pnr build-depends on removed package

2022-01-25 Thread Nilesh Patra
Hi peter, On Tue, 18 Jan 2022 21:10:35 + peter green wrote: > Package: arachne-pnr > Version: 0.1+20190728gitc40fb22-2 > Tags: bookworm, sid > Severity: serious > > arachne-pnr build-depends on fpga-icestorm-chipdb which is no longer built by > the fpga-icestorm source package, Admittedly,

Bug#1003017: dulwich: autopkgtest regression: src/debian/tests/testsuite3: 10: -m: not found

2022-01-29 Thread Nilesh Patra
36:01.0 + @@ -1,3 +1,10 @@ +dulwich (0.20.31-1.1) unstable; urgency=medium + + * Non-maintainer upload. + * Fix variable name in testsuite (Closes: #1003017) + + -- Nilesh Patra Sat, 29 Jan 2022 23:36:01 + + dulwich (0.20.31-1) unstable; urgency=low * New upstream relea

Bug#952169: libmodule-starter-plugin-cgiapp-perl: FTBFS: dh_auto_test: error: perl Build test --verbose 1 returned exit code 1

2022-01-30 Thread Nilesh Patra
r-perl + * d/tests/pkg-perl/SKIP: skip build-deps and syntax.t ++ build-deps is skipped since it seems to be tested on itself ++ syntax.t: One check on titanium/Modules.pm needs fixing upstream + + -- Nilesh Patra Sun, 30 Jan 2022 22:24:46 +0530 + libmodule-starter-plugin-cgiapp-perl (0.44-1)

Bug#990620: python-duckpy: python-ducky -- Mising Depends on python3-h2 -- renders package unusable

2021-07-02 Thread Nilesh Patra
Source: python-duckpy Version: 3.1.0-1 Severity: serious X-Debbugs-Cc: nil...@debian.org Dear Maintainer, python-duckpy has a missing dependency on python3-h2 which is uncovered by a non-superficial autopkgtest committed to salsa[1] As can be seen in the corresponding pipeline, it fails with dep

Bug#990726: resfinder: Should Depend on python3-distutils -- renders package unusable

2021-07-05 Thread Nilesh Patra
Package: resfinder Version: 3.2-2 Severity: serious X-Debbugs-Cc: nil...@debian.org Dear Maintainer, resfinder currently test-depends on python3-distutils, however it really, really should "Depend" on python3-distutils for there is an import call in the main file resfinder.py:15:from distutils.s

Bug#990728: virulencefinder: Should Depend on python3-distutils -- renders package unusable

2021-07-05 Thread Nilesh Patra
Package: virulencefinder Version: 2.0.3+git20190809.dde157a-2 Severity: serious X-Debbugs-Cc: nil...@debian.org Dear Maintainer, virulencefinder currently test-depends on python3-distutils, however it really, really should "Depend" on python3-distutils for there is an import call in the main file

Bug#978794: crac: ftbfs with autoconf 2.70

2021-08-24 Thread Nilesh Patra
control: tags -1 moreinfo Hi Matthias, I admit that I do not get any failures on build, same for several other bugs, for instance #978784 I've triple-checked that my environment is updated, and I'm using version 2.71-2 of autoconf Are these somehow false-positive in any case? If so, will there

Bug#993252: Astroquery doesn't work with Astropy 4.3.1

2021-09-05 Thread Nilesh Patra
On Sun, 29 Aug 2021 13:08:57 +0200 Ole Streicher wrote: > Package: python3-astroquery > Version: 0.4.1+dfsg-4 > Severity: serious > > Dear maintainer, > > The unit tests of astrquery errors with astropy version 4.3.1 which is > currently in unstable. Could you please update astroquery to the lat

Bug#993463: Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-09-05 Thread Nilesh Patra
Hi Ole, Can I ask you to fix this with sunpy soonish? This is one of the reasons for keeping sunpy out of testing too Nilesh On Wed, 1 Sep 2021 20:20:47 +0300 Adrian Bunk wrote: > Control: severity -1 serious > Control: clone -1 -2 > Control: reassign -2 python3-sunpy 3.0.1-3 > Control: retitle

Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-09-05 Thread Nilesh Patra
On Sat, 07 Aug 2021 15:38:00 +0200 Steffen Moeller wrote: > Package: python3-skbio > Version: 0.5.6-4 > Severity: normal > > Dear Maintainer, > > Unpacking python3-skbio (0.5.6-4) ... > dpkg: error processing archive > /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb (--unpack): > tryin

Bug#993252: Astroquery doesn't work with Astropy 4.3.1

2021-09-06 Thread Nilesh Patra
On Mon, 6 Sept 2021 at 01:09, wrote: > Hi, > > I recently tried to update astroquery. > Indeed, version 0.4.3 solves the issue, but it introduces another bug > that prevents uploading. > I reported it upstream. > Patching the current version would probably be more efficient than > waiting for ups

Bug#978891: r-cran-ncdf4: ftbfs with autoconf 2.70

2021-09-08 Thread Nilesh Patra
Hi Jeremy, On 9/8/21 8:24 PM, Jeremy Sowden wrote: >> [1] https://bugs.debian.org/978891 > > Try this patch. Thank you very much, works perfectly! I just uploaded with your patch applied. Nilesh OpenPGP_signature Description: OpenPGP digital signature

Bug#1002969: marked as pending in golang-github-smallstep-certificates

2022-02-15 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1002969 in golang-github-smallstep-certificates reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/go-team/packages/golang-git

Bug#1005011: Please fix capnproto in unstable as well (Was: Re: Bug#1005011: fixed in capnproto 0.9.1-2)

2022-02-16 Thread Nilesh Patra
Tony/Tom, Can you do corresponding fixes for unstable too, or otherwise move experimental release to unstable? Otherwise this bug is causing a un-warranted-for autorm, for example in parsnp[1] [1]: https://tracker.debian.org/pkg/parsnp Regards, Nilesh On Sat, 12 Feb 2022 16:03:40 + Debian

Bug#990201: singularity-container: CVE-2021-33622

2022-02-18 Thread Nilesh Patra
On 2/18/22 6:01 PM, Andreas Tille wrote: Control: tags -1 help Hi, I updated singularity-container in Salsa to the latest available CE release and added some new Build-Depends. Unfortunately it does not build as you can see in salsa-ci[1]. Any help to get the package build is welcome. I pers

Bug#990201: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-18 Thread Nilesh Patra
On 2/19/22 2:08 AM, Andreas Tille wrote: Am Fri, Feb 18, 2022 at 11:31:23PM +0530 schrieb Nilesh Patra: | dh_fixperms | chown -c root.root debian/singularity-container/usr/lib/*/singularity/bin/* | chown: changing ownership of 'debian/singularity-container/usr/lib/x86_64-linux-gnu/singul

Bug#990201: CVE-2021-33622 (was: Re: Accepted singularity-container 3.9.5+ds1-1 (source) into experimental)

2022-02-20 Thread Nilesh Patra
Hi Salvatore, On Sun, Feb 20, 2022 at 08:01:34PM +0100, Salvatore Bonaccorso wrote: > >[ Andreas Tille ] > >* Team upload. > >* Version > 3.6.x are closing CVE-2021-33622 > > Closes: #990201 > > Can you help isolate on that? > https://support.sylabs.io/support/solutions/articles/

Bug#990201: CVE-2021-33622 (was: Re: Accepted singularity-container 3.9.5+ds1-1 (source) into experimental)

2022-02-21 Thread Nilesh Patra
Hi again, On Mon, 21 Feb 2022 01:03:13 +0530 Nilesh Patra wrote: > > So where has this issue bin fixed? > > But yes, you are right, even at Mitre metadata, I do not find any information > about any patch for the bug; i.e. I do not see the "code" that fixes it, and >

Bug#1005459: rdflib: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.10 3.9" returned exit code 13

2022-02-24 Thread Nilesh Patra
On 2/24/22 3:36 PM, Andreas Tille wrote: Please consider releasing rdflib v6 which in my brief testing is compatible with pyparser v3. I tried to follow your suggestion to upgrade rdflib to version 6 in Git. Unfortunately I'm stumbling upon a different issue in the new test suite[1]. One real

Bug#1005459: rdflib: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.10 3.9" returned exit code 13

2022-02-24 Thread Nilesh Patra
On 2/24/22 6:00 PM, Nilesh Patra wrote: One really odd thing I noticed is that there is no dh_auto_build is overridden but not triggered inside it again, and so dh_auto_build happening at all. ^ Wow, in a hurry I wrote really sloppy english there I meant

Bug#1005459: rdflib: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.10 3.9" returned exit code 13

2022-02-24 Thread Nilesh Patra
On 2/24/22 6:10 PM, Andreas Tille wrote: Sorry for dragging you into this - the experimental branch was way advanced which I learned in bug #995675. This leaves the question how we can proceed. It makes probably sense to run ratt or something like this to learn about packages that are broken.

Bug#1006536: python-prov fails its autopkgtest with rdflib 6.1.1-1

2022-02-27 Thread Nilesh Patra
Source: python-prov Version: 2.0.0-1 Severity: serious Tags: patch X-Debbugs-Cc: jo...@jones.dk Hi Jonas, With recent upload of rdflib, python-prov fails its autopkgtest as seen here[1] (I did not paste logs as this clutters my terminal really) It is also FTBFS since it runs the same tests at bu

Bug#1000980: kubernetes: Please upgrade to golang-1.17

2022-02-28 Thread Nilesh Patra
On Tue, 8 Feb 2022 18:02:54 + Janos LENART wrote: > I'll get on this. Thanks. Janos, Any updates on this? There is a patch as well in this email[1] Can you please apply and upload? [1]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000980#31 Regards, Nilesh signature.asc Description

Bug#1005479: toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13

2022-03-02 Thread Nilesh Patra
Hi Paul, On 3/2/22 9:09 PM, Paul Gevers wrote: On 02-03-2022 14:58, Nilesh Patra wrote: @Paul, could you please help reproduce this in the debci environment and help us with any clues as to what might be wrong? The autopkgtest command line is at the top of each log. I am aware, and I use

Bug#1005479: toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13

2022-03-02 Thread Nilesh Patra
Hi Paul, On 3/2/22 11:51 PM, Paul Gevers wrote: I tried re-triggering it to check once again but looks like runners are not up unfortunately. You mean the salsa ones, right? Yes And so if you could trigger a test suite for this package at your end once, and help debug it, that'd be reall

Bug#1006664: Revert?

2022-03-02 Thread Nilesh Patra
> python3-unicodedata2 has disappeared from the NEW queue, has it been > rejected? https://tracker.debian.org/pkg/python-unicodedata2 > Can we go back to 4.28.5-1 ? Not needed now, thanks to Sean for processing it in time Regards, Nilesh signature.asc Description: PGP signature

Bug#1005479: marked as pending in toil

2022-03-10 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1005479 in toil reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/toil/-/commit/08345ef6f6eb56dd41a25fb1550c2ef024610

Bug#1005479: marked as pending in toil

2022-03-10 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1005479 in toil reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/toil/-/commit/08345ef6f6eb56dd41a25fb1550c2ef024610

Bug#1005479: toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13

2022-03-10 Thread Nilesh Patra
On Thu, Mar 10, 2022 at 01:09:41PM +0100, Paul Gevers wrote: > I was finally able to make time and do this. I first ran > > admin@ci-worker08:/tmp/toil$ apt source toil/unstable > > admin@ci-worker08:/tmp/toil/toil-5.6.0$ autopkgtest --shell --shell-fail . > -- lxc --sudo autopkgtest-unstable-i38

Bug#1006376: blasr: autopkgtest regression: Segmentation fault

2022-03-10 Thread Nilesh Patra
control: fixed -1 5.3.5+dfsg-4 control: close -1 On Thu, 24 Feb 2022 16:09:55 +0100 Paul Gevers wrote: > Currently this regression is blocking the migration to testing [1]. Can > you please investigate the situation and fix it? This has been fixed with my latest upload, everything is green now.

Bug#1004455: python3-mappy: undefined symbol ksw_extz2_sse on several architectures

2022-03-10 Thread Nilesh Patra
Hi Michael, On Fri, 28 Jan 2022 01:17:08 +0200 Adrian Bunk wrote: > This is due to: > > (sid_armhf-dchroot)bunk@amdahl:~$ python3 > Python 3.9.10 (main, Jan 16 2022, 17:12:18) > [GCC 11.2.0] on linux > Type "help", "copyright", "credits" or "license" for more information. > >>> import mappy > T

Bug#1004516: cwltool breaks toil autopkgtest: No such file or directory: '/home/debci/tmp/tmpgxz5j85g'

2022-03-10 Thread Nilesh Patra
control: reassign -1 toil control: found -1 5.6.0-2 control: fixed -1 5.6.0-4 control: close -1 On Sat, 29 Jan 2022 19:41:25 +0100 Paul Gevers wrote: > [0] You can see what packages were added from the second line of the log > file quoted below. The migration software adds source package from > u

Bug#1005479: toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13

2022-03-10 Thread Nilesh Patra
Hi again, Paul. On 3/10/22 6:28 PM, Nilesh Patra wrote: On Thu, Mar 10, 2022 at 01:09:41PM +0100, Paul Gevers wrote: I was finally able to make time and do this. I first ran admin@ci-worker08:/tmp/toil$ apt source toil/unstable admin@ci-worker08:/tmp/toil/toil-5.6.0$ autopkgtest --shell

Bug#1000336: Upgrading tbb

2022-03-13 Thread Nilesh Patra
Hi Mo, On 2/23/22 11:01 AM, M. Zhou wrote: Hello guys. Finally it's all green on our release architectures https://buildd.debian.org/status/package.php?p=onetbb&suite=experimental I shall request the slot for transition once finished the rebuild of its reverse dependencies and filed FTBFS bugs

Bug#1000336: Upgrading tbb

2022-03-15 Thread Nilesh Patra
On 3/14/22 11:51 AM, Andreas Tille wrote: Hi, Am Mon, Mar 14, 2022 at 12:13:50AM + schrieb Torrance, Douglas: On Sun 13 Mar 2022 04:50:32 PM EDT, M. Zhou wrote: Recently I'm not able to test the build of libtbb-dev's reverse dependencies as my build machine was out of access. That blocks

Bug#1005479: toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13

2022-03-19 Thread Nilesh Patra
On 19 March 2022 1:56:17 pm IST, Sascha Steinbiss wrote: >Hi Nilesh, > >[…] >> Would it be possible to add a hint to ignore arm64 autopkgtest suite? > >BTW I think this is possible already in the autopkgtest definition [1] by >adding an Architecture: section and leaving out arm64 in the list o

Bug#1005479: toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13

2022-03-19 Thread Nilesh Patra
On Sat, Mar 19, 2022 at 02:32:12PM +0100, Paul Gevers wrote: > > [1] https://people.debian.org/~eriberto/README.package-tests.html > > For avoidance of doubt, the canonical definition lives in the autopkgtest > package: > https://salsa.debian.org/ci-team/autopkgtest/-/blob/master/doc/README.packa

Bug#1007248: [Pkg-javascript-devel] Bug#1007248:

2022-03-25 Thread Nilesh Patra
On 25 March 2022 4:51:44 pm IST, hardpenguin13 wrote: >Was also affected by this, ended up removing affected nodejs packages and >installing them again. No attempt to overwrite reported by dpkg. Same, I saw this yesterday and the same workaround worked.

Bug#1002525: r-cran-tmb: autopkgtest needs update for new version of rmatrix: Package version inconsistency detected.

2021-12-25 Thread Nilesh Patra
control: reassign -1 r-cran-tmb/1.7.22-1 Hi Dirk, On Thu, 23 Dec 2021 14:30:10 -0600 Dirk Eddelbuettel wrote: > passfail > | rmatrixfrom testing1.4-0-1 > | r-cran-tmb from testing1.7.22-1 > | all others from test

Bug#1002587: python3-sage: Depends on unavailable package

2021-12-27 Thread Nilesh Patra
On 12/28/21 12:36 AM, Tobias Hansen wrote: Version: 9.4-1 Hi, memory-allocator passed NEW now. I just did a source-upload for memory-allocator with a bit of polishing. sagemath autopkgtests are failing which do not look exactly because of memory-allocator, taking a look locally. Kind Regard

Bug#1002142: shasta: FTBFS: PythonModule.cpp:40:29: error: expected primary-expression before ‘(’ token

2021-12-31 Thread Nilesh Patra
forwarded -1 https://github.com/chanzuckerberg/shasta/issues/274 Hopefully upstream fixes it soonish Regards, Nilesh signature.asc Description: PGP signature

Bug#1002757: hfd-service: FTBFS: dh_auto_configure: error: cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTA

2022-01-09 Thread Nilesh Patra
Hi Mike, On Tue, 28 Dec 2021 21:16:12 +0100 Lucas Nussbaum wrote: > Source: hfd-service > Version: 0.1.0-3 > Severity: serious > > -- No package 'libhardware' found > > CMake Warning at CMakeLists.txt:22 (message): > > Bulding without libhybris support, missing required dependencies! > > > >

Bug#1002223: simde: FTBFS: dh_auto_test: error: cd clang_test && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 meson test returned exit code 6

2022-01-10 Thread Nilesh Patra
Andreas, On Thu, 30 Dec 2021 09:07:08 +0100 Andreas Tille wrote: > Control: tags -1 upstream > Control: forwarded -1 https://github.com/simd-everywhere/simde/issues/936 > > Hi, > > I'm able to reproduce this issue in a local pbuilder chroot and have > forwarded the issue upstream. Quoting Mich

Bug#1002223: simde: FTBFS: dh_auto_test: error: cd clang_test && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 meson test returned exit code 6

2022-01-10 Thread Nilesh Patra
Control: severity -1 important On Mon, 10 Jan 2022 15:53:01 +0530 Nilesh Patra wrote: > Andreas, > > On Thu, 30 Dec 2021 09:07:08 +0100 Andreas Tille wrote: > > Control: tags -1 upstream > > Control: forwarded -1 https://github.com/simd-everywhere/simde/issues/936 >

Bug#1003561: mypy breaks python-sop autopkgtest: Missing type parameters for generic type "_SubParsersAction"

2022-01-17 Thread Nilesh Patra
loses: #1003561) + + -- Nilesh Patra Mon, 17 Jan 2022 18:33:40 +0530 + python-sop (0.2.0-1.1) unstable; urgency=medium * Non-maintainer upload. diff -Nru python-sop-0.2.0/debian/patches/fix-test-with-new-mypy.patch python-sop-0.2.0/debian/patches/fix-test-with-new-mypy.patch --- python-sop-

Bug#979625: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError)

2021-12-09 Thread Nilesh Patra
control: reopen -1 control: found -1 python-cooler/0.8.11 control: severity -1 important On 9 December 2021 2:23:11 pm IST, Andreas Tille wrote: >I think you did not really re-opened the bug (since it was not in CC) - Oops, yeah I missed that. Typing emails on phone isn't very optimal as it seem

Bug#1001410: marked as pending in python-csb

2021-12-09 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1001410 in python-csb reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-csb/-/commit/5f050a4f584824ac68e93fae7

Bug#1000339: r-cran-raster breaks r-cran-satellite autopkgtest: unable to find an inherited method for function 'extend'

2021-12-10 Thread Nilesh Patra
control: notfound -1 r-cran-satellite/1.0.4-1 control: fixed -1 r-cran-raster/3.5-9-1 The new release fixes things for me locally, I will check debci and close the bug when debci runs the tests. Please hold on until then. Regards, Nilesh signature.asc Description: PGP signature

Bug#995769: Fwd: dbab_1.5.7-2_source.changes REJECTED

2021-12-10 Thread Nilesh Patra
Hi Tong, On Fri, 10 Dec 2021 15:12:20 -0500 Tong Sun wrote: > The Debian FTP Masters explains that it means "DMs may not upload > packages going to NEW. Need to use a sponsor for those". If your changes are updated in salsa, I could help you with sponsoring. Let me know if you'd like some help

Bug#995769: Fwd: dbab_1.5.7-2_source.changes REJECTED

2021-12-10 Thread Nilesh Patra
On 12/11/21 2:30 AM, Tong Sun wrote: Oh, thanks a lot Nilesh! Everything is updated on salsa. pls double check, e.g.: https://salsa.debian.org/debian/dbab/-/commit/4cd8db27cec918244a9fba3d698a7b0123c9f3f9 Just one query: you reason for moving to contrib is not entirely clear to me. You wrote

Bug#1001009: Downloads external files on install

2021-12-10 Thread Nilesh Patra
Hey Tong, On Fri, Dec 10, 2021 at 05:05:03PM -0500, Tong Sun wrote: > dbab moving to contrib is because of this Bug#1001009. I personally have no > idea, but as requested by Andrey. > > I guess it is about this line that is called from the postinst script > https://salsa.debian.org/debian/dbab/-/

Bug#1000339: r-cran-raster breaks r-cran-satellite autopkgtest: unable to find an inherited method for function 'extend'

2021-12-10 Thread Nilesh Patra
control: notfixed -1 r-cran-raster/3.5-9-1 Hi Robert, On 12/11/21 12:10 AM, Nilesh Patra wrote: On 12/10/21 11:43 PM, Robert J. Hijmans wrote: The new release of raster should first update terra if indeed it finds an older version. So let's hope I am right. I just uploaded the new ve

Bug#1000339: r-cran-raster breaks r-cran-satellite autopkgtest: unable to find an inherited method for function 'extend'

2021-12-11 Thread Nilesh Patra
On 12/11/21 12:14 PM, Nilesh Patra wrote: control: notfixed -1 r-cran-raster/3.5-9-1 Hi Robert, On 12/11/21 12:10 AM, Nilesh Patra wrote: On 12/10/21 11:43 PM, Robert J. Hijmans wrote: The new release of raster should first update terra if indeed it finds an older version. So let's h

Bug#1001009: Downloads external files on install

2021-12-11 Thread Nilesh Patra
Hi Tong, On 12/12/21 1:06 AM, Tong Sun wrote: Thank you Nilesh for such detailed explanation. Weighted on all the options, I decided it still needs to go to contrib and have put a note in d/README.Debian -- https://salsa.debian.org/debian/dbab/-/commit/fa771322e1342c532637e17baa863cca8ac80488

Bug#1000339: r-cran-raster breaks r-cran-satellite autopkgtest: unable to find an inherited method for function 'extend'

2021-12-12 Thread Nilesh Patra
On 11 December 2021 8:53:04 pm IST, Andreas Tille wrote: >Am Sat, Dec 11, 2021 at 02:33:40PM +0530 schrieb Nilesh Patra: >> On 12/11/21 12:14 PM, Nilesh Patra wrote: >> > Tests are still failing, see here[1]. It is not a problem of terra >> > version, as it seems, it i

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