Bug#1032902: Numba issues for genx for other architectures than amd64 and ppc64el (Was: genx won't start: TypeError: Pen(): arguments did not match any overloaded call)

2023-04-29 Thread Nilesh Patra
On Tue, Apr 18, 2023 at 03:54:23PM +0200, Andreas Tille wrote: > and we have other errors for other architectures which all contain > the string "numba". IMHO this is a mess we can hardly fix in hard > freeze. I see only two chances: I haven't done a thorough research but it is probably originat

Bug#1032902: Numba issues for genx for other architectures than amd64 and ppc64el (Was: genx won't start: TypeError: Pen(): arguments did not match any overloaded call)

2023-05-02 Thread Nilesh Patra
On Sat, Apr 29, 2023 at 07:44:24PM +0530, Nilesh Patra wrote: > On Tue, Apr 18, 2023 at 03:54:23PM +0200, Andreas Tille wrote: > >2. Remove the package from testing for the moment. The only > > rdepends is currently pan-grazing-incidence which will be > > low

Bug#918774: fixed in lasi 1.1.3-1

2023-05-06 Thread Nilesh Patra
On Thu, 27 Apr 2023 00:37:06 +0530 Nilesh Patra wrote: > On Sun, 23 Apr 2023 06:18:58 + Debian FTP Masters > wrote: > > Source: lasi > > Source-Version: 1.1.3-1 > > Done: Nilesh Patra > > Sending BTS mail to help reset the autorm counter. Another mail

Bug#1035629: libnlopt-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2023-05-14 Thread Nilesh Patra
Hi Andreas On Sat, 06 May 2023 23:19:13 +0200 Andreas Beckmann wrote: Package: libnlopt-dev Version: 2.7.1-4 Severity: serious /usr/share/doc/libnlopt-dev/examples/CMakeLists.txt (libnlopt-dev:amd64) != /usr/share/doc/libnlopt0/examples/CMakeLists.txt (?) /usr/share/doc/libnlopt-dev -> l

Bug#1035629: libnlopt-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2023-05-14 Thread Nilesh Patra
Hi Thanks for explaining it to me. On 14/05/23 14:08, Andreas Beckmann wrote: On 14/05/2023 10.22, Nilesh Patra wrote: Could you help explain where exactly the overwriting is happening? In bullseye libnlopt-dev ships /usr/share/doc/libnlopt-dev as a symlink to libnlopt0 dpkg retains

Bug#1033835: polyml: autopkgtest regression: output on stderr

2023-05-14 Thread Nilesh Patra
Hi Jessica, On Sun, 2 Apr 2023 15:22:49 +0200 Paul Gevers wrote: Source: polyml Version: 5.7.1-5 Control: found -1 5.7.1-4 Severity: serious Your package has an autopkgtest, great. However, it fails since July 2020. Can you please investigate the situation and fix it? I copied some Looks li

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
Hi On Tue, May 16, 2023 at 03:01:10PM +0200, Andreas Tille wrote: > when fixing bug #1035428 I realised test suite issues with > > r-cran-thematic [1] >-> Error in `svglite_(filename, bg, width, height, pointsize, standalone, > always_valid)`: Graphics API version mismatch > > r-c

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
On Tue, May 16, 2023 at 08:26:21AM -0500, Dirk Eddelbuettel wrote: > Note that none of this affects the release. My recommendation is temporarily > suspend the autopkgtest in those affected packages. No, don't do that as they indicate a new r-base being pulled as one of the dependencies (which wo

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: > I personally prefer "1" over 2 as it is less noise (and effort). On second thoughts, I think sending it via testing-proposed-updates would be a better thing to do, as this case perfectly fits the problem. It's be s

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Nilesh Patra
On Tue, May 16, 2023 at 09:31:20AM -0500, Dirk Eddelbuettel wrote: > > On 16 May 2023 at 19:49, Nilesh Patra wrote: > | On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: > | > I personally prefer "1" over 2 as it is less noise (and effort). > | > | On s

Bug#1035568: dnsmasq is broken on new bookworm installations

2023-05-16 Thread Nilesh Patra
On Fri, 05 May 2023 15:17:37 + =?utf-8?q?Jens_Mei=C3=9Fner?= wrote: > Package: dnsmasq > Version: 2.89-1 > Severity: grave > Justification: renders package unusable > X-Debbugs-Cc: heptal...@gmx.de > > Hello, > > dnsmasq on bookworm fails to start after installation because the dns port 53

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-17 Thread Nilesh Patra
On Wed, May 17, 2023 at 08:58:58AM +0200, Andreas Tille wrote: > Am Tue, May 16, 2023 at 07:49:55PM +0530 schrieb Nilesh Patra: > > On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: > > > I personally prefer "1" over 2 as it is less noise (and effort). &g

Bug#1030451: marked as pending in python-pytray

2023-02-05 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1030451 in python-pytray reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-pytray/-/commit/af866bd

Bug#1028779: buildbot: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p 3.11 --system=custom "--test-args=PYTHONPATH=pkg:{destdir}/{install_dir} PATH=\$PATH:{destdir}/usr/bin trial3 --

2023-02-05 Thread Nilesh Patra
Hi Robin, buildbot is marked for removal on Feb 16. Do you intend to make an upload? Thanks Nilesh On Wed, 1 Feb 2023 11:47:56 +0100 s3v wrote: > Dear maintainer, > > Please find attached a patch to avoid deprecation warnings > causing tests to fail. > > Kind Regards signature.asc Descripti

Bug#1030096: dask.distributed intermittent autopkgtest fail

2023-02-09 Thread Nilesh Patra
Control: fixed -1 2022.12.1+ds.1-2 Some tests passed after I put it for (multiple) retries. The current state looks fine https://qa.debian.org/excuses.php?package=dask.distributed But I am not sure if this counter would be set to 2 days (from 5 days) or not -- will likely need to ask rel

Bug#1030096: dask.distributed intermittent autopkgtest fail

2023-02-10 Thread Nilesh Patra
On 10 February 2023 1:28:04 pm IST, "Rebecca N. Palmer" wrote: >On 10/02/2023 06:41, Andreas Tille wrote: >> Am Fri, Feb 10, 2023 at 08:44:01AM +0530 schrieb Nilesh Patra: >>> But I am not sure if this counter would be set to 2 days (from 5 days) >>> or n

Bug#1016732: Please help to reproduce (Was: shiny-server: server-function don't run)

2023-02-12 Thread Nilesh Patra
Hi Yadd, On Sat, 28 Jan 2023 11:09:21 +0530 Nilesh Patra wrote: > On Fri, Jan 27, 2023 at 07:45:35PM +, Krüger, Sebastian wrote: > > I'm not a Shiny user either (so far), however the plan is for our institute > > to provide Shiny applications for certain users. (I

Bug#1031434: conda-package-handling: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-17 Thread Nilesh Patra
Control: reassign -1 python3-zstandard 0.19.0-3 Control: affects -1 + conda-package-handling Control: forcemerge -1 1031293 On Fri, 17 Feb 2023 06:30:57 +0100 Lucas Nussbaum wrote: > Source: conda-package-handling > Version: 2.0.1-2 > Severity: serious > Justification: FTBFS > Tags: bookworm sid

Bug#1031475: conda-package-streaming: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-18 Thread Nilesh Patra
Control: reassign -1 python3-zstandard 0.19.0-3 Control: affects -1 + conda-package-streaming Control: forcemerge -1 1031293 On Fri, 17 Feb 2023 08:02:54 +0100 Lucas Nussbaum wrote: > Source: conda-package-streaming > Version: 0.7.0-4 > Severity: serious > Justification: FTBFS > Tags: bookworm si

Bug#1031484: augur: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-18 Thread Nilesh Patra
Control: reassign -1 python3-zstandard 0.19.0-3 Control: affects -1 + augur Control: forcemerge -1 1031293 On Fri, 17 Feb 2023 08:02:43 +0100 Lucas Nussbaum wrote: > Source: augur > Version: 20.0.0-1 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User: lu...@debian.org >

Bug#1031444: poetry: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-18 Thread Nilesh Patra
Control: tags -1 moreinfo Control: severity -1 important Hi Lucas, On Fri, 17 Feb 2023 07:47:47 +0100 Lucas Nussbaum wrote: > Source: poetry > Version: 1.3.2+dfsg-3 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User: lu...@debian.org > Usertags: ftbfs-20230216 ftbfs-boo

Bug#1031465: snippy: FTBFS: make[2]: *** [Makefile:32: S1/snps.tab] Error 2

2023-02-20 Thread Nilesh Patra
Attempting to fix Pjotr's address. Pjotr: if you are reading this, could you comment on it? Thanks Nilesh On Mon, 20 Feb 2023 17:21:59 +0100 Andreas Tille wrote: > Hi Pjotr, > > in contrast to the bug reporter I get in my unstable chroot > > ... > [15:53:57] Checking version: bcftools --versio

Bug#1031443: python-zstandard: FTBFS: ImportError: zstd C API versions mismatch; Python bindings were not compiled/linked against expected zstd version (10504 returned by the lib, 10504 hardcoded in z

2023-02-20 Thread Nilesh Patra
On Fri, 17 Feb 2023 07:51:48 +0100 Lucas Nussbaum wrote: > Source: python-zstandard > Version: 0.19.0-3 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User: lu...@debian.org > Usertags: ftbfs-20230216 ftbfs-bookworm > > Hi, > > During a rebuild of all packages in sid, yo

Bug#1016732: Please help to reproduce (Was: shiny-server: server-function? don't run)

2023-02-25 Thread Nilesh Patra
On Sun, Feb 26, 2023 at 12:46:15AM +0530, Pirate Praveen wrote: > On Sun, 12 Feb 2023 23:16:06 +0530 Nilesh Patra wrote: > > Sorry for pinging you again, but would you be able to take a look at this > please? > > I don't know enough coffeescript to be able to check this and

Bug#1032550: igdiscover: FTBFS in testing: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-03-09 Thread Nilesh Patra
Control: severity -1 important I've rebuild igdiscover 0.11-3 in a testing and unstable environment. Both builds are passing all tests. Same for me, I'm reducing the severity. Lucas, could you please do a re-run? I wonder if it is another of those "$specific-CPU-configuration" failures. Tha

Bug#1032549: python-pbcore: FTBFS in testing: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-03-09 Thread Nilesh Patra
Hi Lucas, Source: python-pbcore Version: 2.1.2+dfsg-5 Severity: serious Justification: FTBFS WARNING: The wheel package is not available. /usr/bin/python3.11: No module named pip error: Command '['/usr/bin/python3.11', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '

Bug#1032542: conda-package-handling: FTBFS in testing:, dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11

2023-03-09 Thread Nilesh Patra
unblock 1032542 by 1031293 close 1032542 stop python-zstandard has migrated, and I am able to build conda-package-handling in a testing chroot. Closing the bug. Thanks, Nilesh

Bug#1032540: conda-package-streaming: FTBFS in testing: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-03-09 Thread Nilesh Patra
unblock 1032540 by 1031293 close 1032540 stop Once python3-zstandard has migrated to testing the build time test should work again. python-zstandard has migrated, and I am able to build conda-package-streaming in a testing chroot. Closing the bug. Thanks, Nilesh

Bug#1032120: Upload of new upstream version before fix has migrated to testing

2023-03-10 Thread Nilesh Patra
Quoting Andreas Tille: your recent upload of tiledb 2.15.0-1 into unstable is quite unfortunate in freeze policy. You should have waited at least until 2.14.1-2 fixing this bug to migrate to testing. You would need to ask release team for migration of 2.15.0 which will probably be refused The

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-11 Thread Nilesh Patra
Dirk - Ping on this? If you do not have the time, let me know. I'll do a NMU for tiledb to revert to prev version and also file an unblock request. On 3/10/23 20:53, Nilesh Patra wrote: Quoting Andreas Tille: your recent upload of tiledb 2.15.0-1 into unstable is quite unfortunate in f

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-12 Thread Nilesh Patra
Tl;dr: Because It will not migrate and eventually get kicked out of testing and next stable on April, 13 regardless of what the tracker says now. On 3/12/23 19:00, Dirk Eddelbuettel wrote: Why not wait a week on 2.15.0-1 which now 'Too young, only 4 of 10 days old'? It won't migrate as told

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-13 Thread Nilesh Patra
On Sun, Mar 12, 2023 at 07:27:46PM +0530, Nilesh Patra wrote: > On 3/12/23 19:00, Dirk Eddelbuettel wrote: > > > > Why not wait a week on 2.15.0-1 which now 'Too young, only 4 of 10 days > > old'? > > It won't migrate as told earlier too. By tomorrow it

Bug#1032975: igdiscover -- Broken, unusable package due to incomplete code in the binary package

2023-03-14 Thread Nilesh Patra
Package: igdiscover Version: 0.11-4 Severity: serious Usertags: ftbfs-bookworm Dear Maintainer, igdiscover vendors just a /usr/bin/igdiscover with is supposed to be nothing more than just a wrapper. The actual code is missing from the binary package (i.e. the python files) effectively making igdi

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-14 Thread Nilesh Patra
Hi, I am removing myself from the uploaders field/maintenance of tiledb-py. Feel free to update it once tiledb is ready for migration. The repository lives at python team namespace. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1034221: caddy: dh_installsystemd doesn't handle files in /usr/lib/systemd/system

2023-04-16 Thread Nilesh Patra
Hi Peymaneh, On Tue, 11 Apr 2023 15:54:02 +0200 Andreas Henriksson wrote: > On Tue, Apr 11, 2023 at 09:37:27AM +0200, bi...@debian.org wrote: > > Package: caddy > > Version: 2.6.2-4 > > Severity: serious > > Tags: sid bookworm > > It seems that your package caddy is shipping files (.service, .soc

Bug#1034221: caddy: dh_installsystemd doesn't handle files in /usr/lib/systemd/system

2023-04-17 Thread Nilesh Patra
On Mon, Apr 17, 2023 at 03:47:43PM +, Peymaneh wrote: > Am 16.04.23 um 17:37 schrieb Nilesh Patra: > > Can you take care of this? > > thanks for the mail Nilesh, I missed the bugreport. In your fix, why not use Andreas' suggestion to install it via "pkg-config --vari

Bug#918774: fixed in lasi 1.1.3-1

2023-04-26 Thread Nilesh Patra
On Sun, 23 Apr 2023 06:18:58 + Debian FTP Masters wrote: Source: lasi Source-Version: 1.1.3-1 Done: Nilesh Patra Sending BTS mail to help reset the autorm counter. Thanks Nilesh

Bug#1028748: marked as pending in bottleneck

2023-01-19 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1028748 in bottleneck reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/bottleneck/-/commit/1e9826700e19c

Bug#1022630: marked as pending in node-mermaid

2023-01-21 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1022630 in node-mermaid reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/js-team/node-mermaid/-/commit/75d671a0625d8fab10bb8e

Bug#1029350: Strange error in dh_auto_install of r-cran-spatstat.core

2023-01-21 Thread Nilesh Patra
Source: dh-r Version: 20210816 Severity: serious Control: retitle -1 dh-r parsing of tests depends/suggests is faulty [ Looks like I has mistakenly submitted the report to control@ earlier, fixing that, rest of the mail is copied as is ] Hi Andreas, On 1/21/23 19:17, Andreas Tille wrote: Hi,

Bug#1029351: Strange error in dh_auto_install of r-cran-spatstat.core

2023-01-21 Thread Nilesh Patra
Source: dh-r Version: 20210816 Severity: serious Control: retitle -1 dh-r parsing of tests depends/suggests is faulty Hi Andreas, On 1/21/23 19:17, Andreas Tille wrote: Hi, I'm just running into dh_auto_install: warning: can't parse dependency spatstat (>= 2.3-3).linnet (>= 2.0-0) Ca

Bug#1029310: [Help] Re: Bug#1029310: src:r-cran-bayesplot: fails to migrate to testing for too long: autopkgtest regression

2023-01-21 Thread Nilesh Patra
On 1/21/23 16:56, Andreas Tille wrote: as per DebCI there are 15 autopkgtest failures which seem to be connected to ggplot2 API somehow.[1] Interestingly Salsa CI[2] does not show this autopkgtest error neither can I reproduce the problem on my local pbuilder. Has anyone some idea what might be

Bug#1029310: [Help] Re: Bug#1029310: src:r-cran-bayesplot: fails to migrate to testing for too long: autopkgtest regression

2023-01-21 Thread Nilesh Patra
On 1/21/23 21:59, Andreas Tille wrote: Am Sat, Jan 21, 2023 at 09:46:07PM +0530 schrieb Nilesh Patra: On 1/21/23 16:56, Andreas Tille wrote: as per DebCI there are 15 autopkgtest failures which seem to be connected to ggplot2 API somehow.[1] Interestingly Salsa CI[2] does not show this

Bug#1027235: marked as pending in python-pomegranate

2023-01-21 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1027235 in python-pomegranate reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-pomegranate/-/comm

Bug#1027352: marked as pending in ruby-activerecord-import

2023-01-21 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1027352 in ruby-activerecord-import reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-activerecord-import/-/com

Bug#1029310: [Help] Re: Bug#1029310: src:r-cran-bayesplot: fails to migrate to testing for too long: autopkgtest regression

2023-01-23 Thread Nilesh Patra
On 23 January 2023 3:06:58 pm IST, Andreas Tille wrote: >Am Sat, Jan 21, 2023 at 10:17:06PM +0530 schrieb Nilesh Patra: >> On 1/21/23 21:59, Andreas Tille wrote: >> > Am Sat, Jan 21, 2023 at 09:46:07PM +0530 schrieb Nilesh Patra: >> > > On 1/21/23 16:56, Andrea

Bug#1029660: nipype FTBFS: ModuleNotFoundError: No module named 'nibabel.trackvis'

2023-01-25 Thread Nilesh Patra
Package: nipype Version: 1.7.1-2 Severity: serious Dear Maintainer, nipype is incompatible with nibabel 4.0 and FTBFS with several errors of type: | _ ERROR collecting interfaces/mrtrix/tests/test_auto_Tensor2Vector.py __ | ImportError while importing test module '/<>/nipype/interfaces

Bug#1028848: python-miio: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.11" returned exit code 13

2023-01-28 Thread Nilesh Patra
reassign 1028848 python-zeroconf 0.47.1-1 fixed 0.47.1-2 close 1028848 stop This was a problem with zeroconf instead, which has been fixed. Re-assigned and closed. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1039510: mvtnorm breaks r-cran-pammtools autopkgtest: missing Breaks and/or versioned (test) Depends?

2023-06-28 Thread Nilesh Patra
Dirk, Andreas, On Wed, Jun 28, 2023 at 10:49:24AM +0200, Andreas Tille wrote: > Yes, so I keep on updating r-cran- packages after freeze and save my > time to repeat myself. I probably should not be the one to add fuel to the fire, but allow me to present some statistics. The debian R team team c

Bug#1039645: r-cran-epi: autopkgtest failure with r-base (4.3.1-1)

2023-06-29 Thread Nilesh Patra
On Thu, Jun 29, 2023 at 11:00:42AM +0200, Andreas Tille wrote: > Am Wed, Jun 28, 2023 at 08:18:57PM +0530 schrieb Nilesh Patra: > > You are correct. A transition is all we need. However, in case of > > r-cran-epi simply adding a versioned dep on dplyr should do the trick. > >

Bug#1039645: r-cran-epi: autopkgtest failure with r-base (4.3.1-1)

2023-06-29 Thread Nilesh Patra
On Thu, Jun 29, 2023 at 11:59:45AM +0200, Andreas Tille wrote: > > See above. Also, logs like > > > > | 190s Error: chunk 16 > > | 190s Error in vectbl_assign(x[[j]], i, recycled_value[[j]]) : > > | 190s DLL requires the use of native symbols > > | 190s Execution halted > > > > Point towards a

Bug#1030955: golang-github-hhatto-gorst: autopkgtest failure

2023-07-13 Thread Nilesh Patra
d, it is as simple as avoiding to remove entire data directory (which is just 28K in size). I'm able to get autopkgtests passing locally. Patch pasted inline. From 7aa6fc7ccf9bb7b938d290bc1e2eab2b324fb7ff Mon Sep 17 00:00:00 2001 From: Nilesh Patra Date: Thu, 13 Jul 2023 21:22:59 +0530 Subject:

Bug#1041435: bitsnpicas: unusable, chokes with nullptr exception

2023-07-18 Thread Nilesh Patra
Package: bitsnpicas Version: 2.0+ds-1 Severity: serious X-Debbugs-Cc: t...@debian.org Dear Maintainer, bitsnpicas is currently unusable and chokes with: $ bitsnpicas Exception in thread "main" java.lang.NullPointerException at java.base/java.io.Reader.(Reader.java:168) at java.ba

Bug#1041451: gmap: FTBFS on all !amd64 archs

2023-07-18 Thread Nilesh Patra
Source: gmap Version: 2023-06-01+ds-1 Severity: serious Dear Maintainer, gmap fails to build on all architectures except amd64. It compiles, but seems to fail it's build time tests, in particular align.test > 138435 AACAGCTA > > 4617 AACAGCTA > > FAIL al

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Nilesh Patra
On Sun, 23 Jul 2023 07:15:09 -0500 Dirk Eddelbuettel wrote > Is this is not an example of a release manager override? The affectect > packages all work together in unstable and could migrate. How do you conclude that? The versions of affected packages are same in unstable and testing. They fail i

Bug#1041435: fixed in bitsnpicas 2.0+ds-2

2023-07-24 Thread Nilesh Patra
. (Closes: #1041435) > Thank you Nilesh Patra. Thanks for applying my patch, it is atleast usable now. However, this part of the bug still remains un-fixed, which would mean potentially pushing non-free software into main. I've thus retitled the bug and reopened it. Best, Nilesh signatur

Bug#1027811: libcifpp-data: uninstallable

2023-01-03 Thread Nilesh Patra
Hi Maarten/Patrice, On Tue, 03 Jan 2023 17:23:19 +0100 Patrice DUROUX wrote: > Package: libcifpp-data > Version: 5.0.5-5 > Severity: normal > > Dear Maintainer, > > Here is the output: > > Setting up libcifpp-data (5.0.5-5) ... > /etc/cron.weekly/update-libcifpp-data: 9: Syntax error: "then"

Bug#1026590: marked as pending in dask.distributed

2023-01-05 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1026590 in dask.distributed reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/dask.distributed/-/commit/3

Bug#976506: Fix for bullseye

2023-01-09 Thread Nilesh Patra
On 9 January 2023 8:11:11 pm IST, Santiago Vila wrote: >reopen 976506 >found 976506 1.7.2-1 >found 976506 1.7.2-2 >fixed 976506 2.0.1-1 >thanks > >Hi. Please consider fixing this in stable as well, >as packages in stable must build in stable. > >If you have never done an upload for stable, the

Bug#1027209: marked as pending in pyzmq

2023-01-12 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1027209 in pyzmq reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/pyzmq/-/commit/8d2ed46be2a65f2b132e0e7

Bug#1028609: deepin-terminal: FTBFS -- Build dependency uninstallable

2023-01-13 Thread Nilesh Patra
Package: deepin-terminal Version: 5.2.11-1+b4 Severity: serious X-Debbugs-Cc: a...@debian.org, by...@debian.org Dear Maintainer, deepin-terminal FTBFS because of not being able to install its B-Ds. Some B-D (transitively?) depends on qtbase-abi-5-15-7 which is not installable due to being a virtu

Bug#1027215: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-01-14 Thread Nilesh Patra
On Sat, Jan 14, 2023 at 11:12:07AM +, Rebecca N. Palmer wrote: > theano has been mostly abandoned upstream since 2018. (The Aesara fork is > not abandoned, but includes interface changes including the import name, so > would break reverse dependencies not specifically altered for it.) > > Its

Bug#1028675: defcon: FTBFS: distutils.errors.DistutilsError: Command '['/usr/bin/python3.10', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpyii6c34w', '--quiet', 'to

2023-01-14 Thread Nilesh Patra
Control: tags -1 unreproducible Control: tags -1 moreinfo Control: severity -1 important Hi Lucas, On Sat, 14 Jan 2023 13:39:00 +0100 Lucas Nussbaum wrote: Source: defcon Version: 0.10.1-1 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20

Bug#1026634: marked as pending in yarl

2023-01-14 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1026634 in yarl reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/yarl/-/commit/87712024d2ed9d42b93cfbee6

Bug#1028748: bottleneck: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.11" returned exit code 13

2023-01-14 Thread Nilesh Patra
There is one hacky way to get this moving, and the package build with the patch. But not sure if it should be applied or not (as this is ugly) I am not adding a patch tag for the same reason. Have also mentioned this as a comment in upstream issue. --- a/bottleneck/slow/move.py +++ b/bottlene

Bug#1028774: macsyfinder: FTBFS: RuntimeError: cannot join current thread

2023-01-14 Thread Nilesh Patra
Hi Lucas, On Sat, 14 Jan 2023 13:41:14 +0100 Lucas Nussbaum wrote: Source: macsyfinder Version: 2.0-1 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230113 ftbfs-bookworm >dh_auto_test -O--buildsystem=pybuild > I: pybuild base:240: p

Bug#1028774: macsyfinder: FTBFS: RuntimeError: cannot join current thread

2023-01-15 Thread Nilesh Patra
On Sun, Jan 15, 2023 at 10:08:18AM +0100, Lucas Nussbaum wrote: > On 15/01/23 at 12:20 +0530, Nilesh Patra wrote: > > It passes for me in a clean unstable chroot. Could you please check if this > > is still persistent or was just a on-off thing? > > I can still reproduce I t

Bug#1028774: macsyfinder: FTBFS: RuntimeError: cannot join current thread

2023-01-15 Thread Nilesh Patra
On Sun, Jan 15, 2023 at 02:02:15PM +0100, Santiago Vila wrote: > I can reproduce this build failure on Hetzner virtual machines with 2 CPUs, > where it fails randomly 50% of the time. > > Therefore, to reproduce the randomness, you have to try many times. I built it 50 times on barriere.debian.or

Bug#1026492: seqan2: FTBFS: TypeError: a bytes-like object is required, not 'str'

2022-12-21 Thread Nilesh Patra
On Wed, 21 Dec 2022 12:32:25 +0100 olivier sallou wrote: > On Wed, 2022-12-21 at 11:02 +0100, olivier sallou wrote: > > looks like a python3 issue (though was already adapter to py3...) > > > > will have a look and reproduce > > I could reproduce and found an issue with demo_checker.py handling

Bug#1022404: raqm: diff for NMU version 0.7.0-4.1

2022-12-21 Thread Nilesh Patra
On Sat, 19 Nov 2022 21:19:24 +0200 Adrian Bunk wrote: > Control: tags 1022404 + patch > Control: tags 1022404 + pending > > Dear maintainer, > > I've prepared an NMU for raqm (versioned as 0.7.0-4.1) and uploaded > it to DELAYED/15. Please feel free to tell me if I should cancel it. It has been

Bug#1026608: marked as pending in jcommander

2022-12-21 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1026608 in jcommander reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/java-team/jcommander/-/commit/faa56c48a90d96905c35775e

Bug#1026586: marked as pending in python-asyncssh

2022-12-21 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1026586 in python-asyncssh reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-asyncssh/-/commit/8a5

Bug#1026512: marked as pending in ruby-prof

2022-12-23 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1026512 in ruby-prof reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-prof/-/commit/74ec3f804170b2e8b71ffc6b43

Bug#1025778: autoremoval

2022-12-23 Thread Nilesh Patra
On 12/23/22 15:07, Maarten L. Hekkelman wrote: Hi, Something is going wrong, somewhere. I prepared packages to upgrade libcifpp and everything depending on it. Pushed some other stuff into testing also as a preparation and submitted a 'bug' asking for a time slot to transition both libcifpp a

Bug#1020576: please update sage for pari 2.15.0 and gap 4.12.0

2022-12-23 Thread Nilesh Patra
On Sat, 10 Dec 2022 18:07:53 +0530 Nilesh Patra wrote: > On Mon, 28 Nov 2022 21:05:07 + Tobias Hansen wrote: > > On 11/27/22 19:24, Nilesh Patra wrote: > > > On Sun, Nov 27, 2022 at 05:35:17PM +, Tobias Hansen wrote: > > >> On 11/27/22 06:37, Nilesh Patr

Bug#1026500: marked as pending in pexpect

2022-12-23 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1026500 in pexpect reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/pexpect/-/commit/00023268e170ef850d2

Bug#1026570: python-streamz: FTBFS: ValueError: I/O operation on closed file.

2022-12-24 Thread Nilesh Patra
Control: fix blocked by 1026590 Pretty sure this stems from dask.distributed itself, as I see similar error messages there. On Tue, 20 Dec 2022 18:23:56 +0100 Lucas Nussbaum wrote: > Source: python-streamz > Version: 0.6.3-3 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs

Bug#1027061: sqlmodel -- FTBFS with python3.11

2022-12-27 Thread Nilesh Patra
Source: sqlmodel Version: 0.0.8-1 Severity: serious X-Debbugs-Cc: mo...@debian.org Hi, sqlmodel FTBFS with tonnes of: I: pybuild base:240: PYTHONPATH=/<> python3.11 -m pytest -k 'not test_create_db_and_table' = test session starts ==

Bug#1027062: python3-sqlmodel -- Uninstallable with new sqlalchemy in unstable

2022-12-27 Thread Nilesh Patra
Package: python3-sqlmodel Version: 0.0.8-1 Severity: serious X-Debbugs-Cc: mo...@debian.org Hi, The pyproject.toml of sqlmodel enforces a strictly less than dep on sqlalchemy version 1.4.41 however the current version of sqlalchemy in unstable is 1.4.45, and hence sqlmodel is unstallable. -- Sy

Bug#1027063: python3-ormar uninstallable with current sqlalchemy in unstable

2022-12-27 Thread Nilesh Patra
Package: python3-ormar Version: 0.12.0-1 Severity: serious X-Debbugs-Cc: edw...@4angle.com Hi, The pyproject.toml of ormar declares a strictly less than dep for sqlalchemy <1.4.42 but the current sqlalchemy version in unstable is 1.4.45, and hence it is uninstallable at the moment. -- System

Bug#1026590: dask.distributed: FTBFS: RuntimeError: IOLoop is closed

2022-12-27 Thread Nilesh Patra
Hi Diane, It seems that dask.distributed's current version in unstable is python3.11-incompatible, which is breaking a bunch of stuff. Could you please consider fixing it and closing the bug? On Tue, 20 Dec 2022 18:20:11 +0100 Lucas Nussbaum wrote: > Source: dask.distributed > Version: 2022.02.

Bug#1027138: sqlmodel -- autopkgtests FAIL

2022-12-28 Thread Nilesh Patra
Source: sqlmodel Version: 0.0.8-2 Severity: serious X-Debbugs-Cc: mo...@debian.org Hi, Autopkgtest for new upload of sqlmodel are failing with | # Test inherited indexes |insp: Inspector = inspect(mod.engine) |indexes = insp.get_indexes(str(mod.Hero.__tablename__)) |

Bug#1015322: marked as pending in ruby-kyotocabinet

2022-12-28 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1015322 in ruby-kyotocabinet reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/ruby-team/ruby-kyotocabinet/-/commit/816c2438a6

Bug#1027335: pairtools -- FTBFS in unstable

2022-12-30 Thread Nilesh Patra
Source: pairtools Version: 0.3.0-3.2 Severity: serious Pairtools FTBFS with pysam related error. Looks like something is off. dh_auto_clean I: pybuild base:240: python3.11 setup.py clean Traceback (most recent call last):

Bug#1027335: pairtools -- FTBFS in unstable

2022-12-30 Thread Nilesh Patra
On Fri, 30 Dec 2022 20:05:32 +0530 Nilesh Patra wrote: > Source: pairtools > Version: 0.3.0-3.2 > Severity: serious > > Pairtools FTBFS with pysam related error. Looks like > something is off. > > dh_auto_clean > I: pybuild base:240: python3.11 setup.py clean > Tr

Bug#1027335: pairtools -- FTBFS in unstable

2022-12-30 Thread Nilesh Patra
Control: severity -1 normal Control: retitle -1 pairtools -- current repo in salsa FTBFS Control: clone -1 -2 Control: reassign -2 python3-pysam 0.20.0+ds-2 Control: retitle -2 pysam -- no definition for bam_dup1 On Fri, Dec 30, 2022 at 08:24:42PM +0530, Nilesh Patra wrote: > On Fri, 30 Dec 2

Bug#1027629: python-biopython: FTBFS: Test DSSP generation from MMCIF with non-standard residues.

2023-01-01 Thread Nilesh Patra
Hi Maarten, This seems to stem from your latest upload of dssp. Could you consider taking a look at this one? Thanks, Nilesh On Sun, 1 Jan 2023 15:20:12 +0100 Lucas Nussbaum wrote: > Source: python-biopython > Version: 1.80+dfsg-4 > Severity: serious > Justification: FTBFS > Tags: bookworm sid

Bug#1027751: need to properly depend on python3-exceptiongroup

2023-01-02 Thread Nilesh Patra
Source: pytest Version: 7.1.2-4 Severity: serious X-Debbugs-Cc: roehl...@debian.org Hi, While building pairtools version 1.0.2-1 I noticed this error. I have temporarliy added a build depend on exceptiongroup in the said package to work around the issue. | I: pybuild base:240: export CURPY=pyth

Bug#1025380: marked as pending in python-fissix

2022-12-08 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1025380 in python-fissix reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-fissix/-/commit/3e50071

Bug#1024954: librcsb-core-wrapper: (autopkgtest) needs update for python3.11: initialization of CorePyWrap raised unreported exception

2022-12-08 Thread Nilesh Patra
Hi again, On Mon, Nov 28, 2022 at 08:05:35PM +0530, Nilesh Patra wrote: > On Sun, 27 Nov 2022 22:26:31 +0100 Paul Gevers wrote: > > Source: librcsb-core-wrapper > > Version: 1.005-10 > > We are in the transition of adding python3.11 as a supported Python > > version [0

Bug#1025370: ntcard: ftbfs with nthash 2.3.0

2022-12-09 Thread Nilesh Patra
On Wed, 7 Dec 2022 08:27:54 +0100 Andreas Tille wrote: > Hi, > > I'm considering reverting the version bump (shame on me I did not tested > ntcard before uploading). I'm personally quite annoyed with this, I suppose your uploads, or rather team uploads have broken quite a few packages in the pas

Bug#1025115: marked as pending in python-phx-class-registry

2022-12-09 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1025115 in python-phx-class-registry reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-phx-class-r

Bug#1020576: please update sage for pari 2.15.0 and gap 4.12.0

2022-12-10 Thread Nilesh Patra
On Mon, 28 Nov 2022 21:05:07 + Tobias Hansen wrote: > On 11/27/22 19:24, Nilesh Patra wrote: > > On Sun, Nov 27, 2022 at 05:35:17PM +, Tobias Hansen wrote: > >> On 11/27/22 06:37, Nilesh Patra wrote: > >>> Tobias, since this is done, would you consider to che

Bug#1025835: tiledb-py: build-depends on libtiledb-doc

2022-12-10 Thread Nilesh Patra
On Sat, Dec 10, 2022 at 07:56:52AM -0600, Dirk Eddelbuettel wrote: > > On 10 December 2022 at 09:07, Peter Green wrote: > | Source: tiledb-py > | Version: 0.18.2-1 > | Severity: serious > | Justification: rc policy - "Packages must be buildable within the same > release" > | x-debbugs-cc: e...@de

Bug#1025835: marked as pending in tiledb-py

2022-12-10 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1025835 in tiledb-py reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/tiledb-py/-/commit/3ebd90b5a585801

Bug#1005619: marked as pending in hypercorn

2022-12-11 Thread Nilesh Patra
Control: tag -1 pending Hello, Bug #1005619 in hypercorn reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/hypercorn/-/commit/3b7c9435b05554b

Bug#1025658: libboost-python1.74-dev: Python 3.11 changes break loading of boost-python using extensions

2022-12-11 Thread Nilesh Patra
Hi Anton/Gio, This is breaking a bunch of packages, including packages that directly affect key-packages. Since you maintain boost, could you please apply Stuart's patch and upload? Thanks! On Wed, 07 Dec 2022 12:25:10 +1100 Stuart Prescott wrote: > Package: libboost-python1.74-dev > Version: 1

Bug#1025370: ntcard: ftbfs with nthash 2.3.0

2022-12-11 Thread Nilesh Patra
Hi Andreas, On 12 December 2022 12:17:37 am IST, Andreas Tille wrote: >Am Fri, Dec 09, 2022 at 03:12:35PM +0530 schrieb Nilesh Patra: >> > I'm considering reverting the version bump (shame on me I did not tested >> > ntcard before uploading). >> >> I&#

Bug#1025370: ntcard: ftbfs with nthash 2.3.0

2022-12-19 Thread Nilesh Patra
Control: severity -1 important For the time being, I have vendored the relevant header files from nthash in ntcard itseld and patched the buildsystem a bit to pick those up. Ans so, for now, ntcard would "build" (with a compromise) and so I am downgrading the severity. -- Best, Nilesh signatu

Bug#987921: [RFS] Re: Bug#987921: linbox FTBFS on 32bit with gcc 10

2021-05-10 Thread Nilesh Patra
Hi Anton, On Tue, 11 May, 2021, 2:47 am Anton Gladky, wrote: > Your changes look good. Let's wait for approval by > release team not to pollute unstable by unapproved uploads. > The release team has responded that it's a targeted fix, and can be uploaded. You might want to see the full reply he

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