e day,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team http://www.debian.org/devel/debian-med
Tooting from home https://framapiaf.org/@charles_plessy
- You do not have my permission to use this email to train an AI -
that disables the
test suite.
Have a nice week-end,
Charles
Le Sun, Nov 24, 2024 at 08:44:04AM +0900, Charles Plessy a écrit :
> Hi Dirk and everybody,
>
> yes it is in the radar. I will disable the tests before the removal if I
> or others can not fix the failure:
>
&g
vide the needed locale
to debci, please let me know.
Have a nice day,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian R packaging team https://wiki.debian.org/Teams/r-pkg-team
Tooting from home https://framapiaf.org/@charles_pless
4 at 04:14:48PM +0900, Charles Plessy a écrit :
>
> quick message to say that r-cran-survey now passes all the CI tests
> after I converted it to an architecture-dependent package.
ink that it is probably fine to release without it
and to consider removing package go if we do not get complains.
Have a nice day,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team http://www.debian.org/devel/debian-med
Control: forwarded 1077463 https://github.com/r-lib/backports/issues/83
Hi all,
I forwarded the issue upstream. I hope they fix it themselves and
we can close this bug with a routine upload.
Have a nice day,
Charles
Le Mon, Jul 29, 2024 at 07:56:49AM +0200, Paul Gevers a écrit :
> Source: r-c
hp?package=rmpi
> [2] https://buildd.debian.org/status/package.php?p=rmpi
>
> --
> dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
>
> ___
> R-pkg-team mailing list
> r-pkg-t...@alioth-lists.debian.net
> https://alioth-lists.debian.net/cgi-bi
hecks/check_results_dimRed.html
Hello everybody,
among the tested release architectures, only i386 is failing.
I can update r-cran-dimred so that it excludes i386.
But would that mean I have to do that for its reverse-dependencies too ?
Have a nice day,
Charles
--
Charles Plessy
Control: tag -1 pending
Hello,
Bug #1073106 in swarm-cluster reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/swarm-cluster/-/commit/790cc43073aa1d80e2b
Control: tag -1 pending
Hello,
Bug #1073105 in ssake reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/ssake/-/commit/e182ba7de0f9b15d434fec946810055d09a
Control: tag -1 pending
Hello,
Bug #1073104 in srst2 reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/srst2/-/commit/5f8b6e6042855ddba33a608e8541be06330
Control: tag -1 pending
Hello,
Bug #1073103 in scythe reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/scythe/-/commit/953eea5245cbf129820dc601f3c0669fe
Control: tag -1 pending
Hello,
Bug #1073098 in libvcflib reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/libvcflib/-/commit/becbc3630213bcc3e3137abdd79
Control: tag -1 pending
Hello,
Bug #1073095 in hilive reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/hilive/-/commit/904fb9ec71de3d067f31607f6d7998a4f
Control: tag -1 pending
Hello,
Bug #1073090 in alter-sequence-alignment reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/alter-sequence-alignment/-/comm
Control: tag -1 pending
Hello,
Bug #1073089 in adapterremoval reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/adapterremoval/-/commit/7fa0487843be8a1e3
h-specific removals were
handled automatically. That would save everybody a lot of work!
Cheers,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team http://www.debian.org/devel/debian-med
Tooting from work,
Hi Andreas,
I agree that we can remove EMBOSS in all 32-bit platforms. I think that
a large fraction of the scientific field has no appetite to do any extra
volunteer work to such as accepting our patches to support scientific
computations on 32-bit systems in 15 years...
Have a nice day,
Charl
Le Thu, Aug 17, 2023 at 07:52:35AM +0200, Andreas Tille a écrit :
>
> arch <- R.version$arch
> identical(arch, "i386") || identical(arch, "i686") || identical(arch,
> "armel") || identical(arch, "armhf")
Hi Andreas, how about:
system("dpkg-architecture -qDEB_BUILD_ARCH", intern=TRUE) %i
Le Tue, Aug 01, 2023 at 09:29:59AM +0900, Charles Plessy a écrit :
>
> the DESeq Bioconductor package was removed from the 3.17 release
> upstream. I think that we can remove it from unstable and testing too.
>
> I will fill a removal later today.
Actually it was removed from Bi
/bad370412269ea6b7543b3f76d238f1765e3affd
r-bioc-deseq (1.39.0-12) unstable; urgency=medium
* Team upload.
* Update patch to rebuild for BioC API 3.17 (Closes: #1042776)
-- Charles Plessy Tue, 01 Aug 2023 11:41:09 +0900
7 release
upstream. I think that we can remove it from unstable and testing too.
I will fill a removal later today.
Have a nice day,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team http://www.debian.org/devel/debian-med
Too
lar
version may build fine, and let biophython pass its tests, we do not
know if t_coffee produces sound results on these architectures. Unless
we know or hear from an ARM user, I would recommend to play safe and
only distribute it on amd64 for this release.
Have a nic
ink that t-coffee never worked on ARM. It built, but never worked.
The simplest would be to distribute it only on amd64.
See https://bugs.debian.org/631249
Have a nice day,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team http
Le Wed, Dec 18, 2019 at 09:35:44AM +0100, Michael Crusoe a écrit :
>
> dcut dm --uid 724D609337113C710550D7473C26763F6C67E6E2 --allow last-align
Hi Michael,
I ran the commmand a bit more than one hour ago.
My Debian skills are a bit rusty; I am not sure if I should receive an
automatic email fe
find
portability bugs such as this one).
What would you prefer ?
Have a nice day,
Charles
--
Charles Plessy Akano, Uruma, Okinawa, Japan
Debian Med packaging team http://www.debian.org/devel/debian-med
Tooting from work, https://mastodon.techn
.
-- Charles Plessy Thu, 14 Feb 2019 22:11:21 +0900
(this message was generated automatically)
--
Greetings
https://bugs.debian.org/890117
Control: tag -1 pending
Hello,
Bug #890117 in bedtools reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
https://salsa.debian.org/med-team/bedtools/commit/25d45b7a051249d4c482fb5095a9bf45
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Akano, Uruma, Okinawa, Japan
(to be re-added)
symbols file.
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
what has been done until now.
Not supporting partial upgrades puts the maintainers of the r-cran and r-bioc
packages between the hammer and the anvil. This said, I think that we have
made constant progresses over the years, so I do not feel shy saying "not yet"
to the Release team again
nomicalignments_1.10.0-1 . ANY . -m "Rebuild for R 3.3.3."
Note to debian-science: there are also R CRAN packages that fail with R
3.3.3, (r-cran-lubridate, r-cran-spam), but I am not yet sure if a
binNMU is enough.
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team
ctors_0.12.1-2 . ANY . -m "Rebuild for R 3.3.3."
nmu r-bioc-iranges_2.8.1-1-m . ANY . "Rebuild for R 3.3.3."
nmu r-bioc-genomicranges_1.26.2-1 . ANY -m "Rebuild for R 3.3.3."
Otherwise I can prepare a more extensive list of packages to rebuild.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
Hi Dirk and Salvatore,
> From: Dirk Eddelbuettel
> On 11 March 2017 at 17:56, Salvatore Bonaccorso wrote:
> |
> | The relevant changes seem to be the following, but I might be mistaken.
> (btw,
> | is there a VCS repository for r-base or does upstream not share development
> | VCS?)
>
> They d
Package: sra-sdk
Severity: grave
Hi all,
quick note from work; sorry to not being able to go deeper.
A colleague has reported to me that sra-sdk 2.7.0-1 is broken
libncbi-vdb2 2.8.0+dfsg-1. For instance:
fastq-dump
fastq-dump: symbol lookup error:
/usr/lib/x86_64-linux-gnu/libncbi-vdb.so.2: un
> On Wed, Nov 02, 2016 at 09:03:45PM +0900, Charles Plessy wrote:
> >
> > I was hoping that Upstream would make a new release with the fix :(
> >
> > So one would need to check if the following commit would be enough as a
> > patch...
> >
> &
Le Wed, Nov 02, 2016 at 12:52:58PM +0100, Andreas Tille a écrit :
>
> you have set #831833 as fixed-upstream at 20 Jul 2016. Do you intend to
> upload the fix to the Debian archive?
Hi Andreas,
I was hoping that Upstream would make a new release with the fix :(
So one would need to check if th
Le Sat, Sep 24, 2016 at 03:34:52PM +0200, Nicolas Braud-Santoni a écrit :
> Control: tag -1 pending
> X-Debbugs-CC: hol...@debian.org
>
> Hi,
>
> I prepared an upload for a new version of cloud-init which fixes
> (among other things) this bug. It is currently available in the
> v0.7.8/master bra
Control: tag -1 +sid
Le Wed, Jul 27, 2016 at 05:03:05AM +, Debian Bug Tracking System a écrit :
> Processing control commands:
>
> > notfound -1 2.25.0-1
> Bug #831833 [src:bedtools] bedtools groupby broken; will break users
> pipelines.
> Ignoring request to alter found versions of bug #831
break users pipelines.
This bug only affects the new upstream release.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
Control: retitle -1 bedtools groupby broken; will break users pipelines.
Control: forwarded -1 https://github.com/arq5x/bedtools2/issues/418
Control: tag -1 +confirmed
Marking as forwarded now that commented in the issue.
The command is completely broken, but unfortunately the regression tests fo
Source: bedtools
Version: 2.26.0-1
Severity: serious
Tags: upstream
Hi all,
at work I was just bitten by upstream issue 418, reporting that `bedtools
groupby` is broken.
https://github.com/arq5x/bedtools2/issues/418
I am filing this bug to prevent migration to Squeeze.
Have a nice day,
--
Ch
package required a change recently for htslib 1.3.1.
> However, if this only builds now with libhts >= 1.3.1, then the
> Build-Depends field should be updated accordingly.
Thanks for the report; the issue was already reported in #822701, which I just
fixed by updating Build-Depends.
Have a nice Sunday,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
Control: tag -1 +pending
Le Wed, Apr 27, 2016 at 10:12:31AM +0900, Charles Plessy a écrit :
>
> Perhaps we also need htslib 1.3.1 to "Break" samtools < 1.3.1... I cloned
> this bug to address that issue.
Hi all,
I added: "Breaks: samtools (<< 1.3.1)". I t
clone 822701 -2
reassign -2 htslib
retitle -2 htslib 1.3.1 breaks samtools 1.3, at least at build time.
retitle 822701 samtools 1.3 fails to build against htslib 1.3.1.
tag 822701 +pending
Le Tue, Apr 26, 2016 at 07:02:28PM +0100, Chris Lamb a écrit :
> Source: samtools
> Version: 1.3-1
> Severity
Le Thu, Aug 20, 2015 at 05:27:34PM +0200, Emmanuel Bourg a écrit :
> Le 20/08/2015 13:40, Charles Plessy a écrit :
>
> > Is that because of incompatibility ? If libnetty-java is still needed,
> > would
> > it be possible to transfer it under the umbrella of the De
that because of incompatibility ? If libnetty-java is still needed, would
it be possible to transfer it under the umbrella of the Debian Java team ?
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
Le Mon, Aug 17, 2015 at 12:46:40PM +0100, Chris Lamb a écrit :
> Source: jellyfish
> Version: 2.2.3-1
> Severity: serious
> Justification: fails to build from source
> User: reproducible-bui...@lists.alioth.debian.org
> Usertags: ftbfs
> X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
>
>
> Should we remove it?
Thanks Moritz for the heads up. I agree to remove it: I do not see manpower
anymore here, and on my side, I would not be able to provide assistance in case
a serious bug would be found.
Have a nice day,
Charles
--
Charles Plessy
Tsurumi, Kanagawa, Japan
sig
Le Thu, Jun 18, 2015 at 11:25:46PM -0400, Aaron M. Ucko a écrit :
>
> I'm glad to see those platforms are doing better now, but that was only
> part of the problem. There are still unexpected failures on i386 and
> kfreebsd-i386 (though the count's dropped from 95 to 2, a big improvement):
>
>
Le Tue, Mar 17, 2015 at 10:15:38AM +0100, Holger Levsen a écrit :
>
> building the cloud-init package fails during package tests because the
> hostname metadata.google.internal cannot be resolved and cloud specific URLs
> like http://169.254.169.254/openstack/latest cannot be accessed, see attac
Le Sun, Nov 16, 2014 at 12:36:05AM +0100, Bill Allombert a écrit :
>
> Do you know if there is a org to XML (or SGML) conversion option ?
Hi Bill,
according to its documentation, Pandoc can do convert Org-Mode to DocBoox
Have a nice Sunday,
--
Charles
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.py", line 303, in setUp
samtools_version ))
ValueError: versions of pysam/samtools and samtools differ: 0.1.19 !=
1.1
Given that samtools is still at version 0.1.19 in Jessie and that it is unsure
whether the version in sid (1.1) will migrate before the Freeze, I am removin
issues, but
I do not know if the problem is likely to be solved in the short term.
https://github.com/samtools/samtools/issues/268
Have a nice day,
--
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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, and given that most users
will want to use Bowtie 2 with TopHat, how about solution 2 ?
Have a nice day,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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Le Tue, Jul 22, 2014 at 01:47:49PM -0300, Miguel Landaeta a écrit :
>
> This is just about a missing jar file in the classpath of the
> compilation.
> diff -Nru wsdl2c-0.1/debian/rules wsdl2c-0.1/debian/rules
> --- wsdl2c-0.1/debian/rules 2012-06-23 04:07:09.0 -0300
> +++ wsdl2c-0.1/de
maintainers of the treeviewx packages there to see if they have found a
solution on their side.
Thanks again, and have a nice day,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sure what to do. Is that due to some transition ? Shall I just wait
and try again in a couple of weeks ?
(The VCS URL of the package is svn+ssh://svn.debian.org/svn/svn/pkg-eucalyptus)
Have a nice day,
-- Charles Plessy, Tsurumi, Kanagawa, Japan
Le Sat, Jul 19, 2014 at 08:34:02PM +0200
/dh-exec
usr/lib/libhts.so.* usr/lib/${DEB_HOST_MULTIARCH}/
Debhelper does the rest.
See https://wiki.debian.org/Multiarch/Implementation for details.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
To UNSUBSCR
Le Wed, Apr 02, 2014 at 07:10:23PM +1100, Aníbal Monsalve Salazar a écrit :
>
> I just submitted Aleksandar Zlicic's patch to upstream.
>
> https://sourceforge.net/p/staden/bugs/105/
Thanks a lot for this !
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with
ker on SourceForge:
<http://sourceforge.net/p/staden/bugs/>, which is a better place for providing
patches.
Have a nice day,
Charles
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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where it does not build.
Have a nice day,
--
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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rd to the SKIP codes, Mr Halpern draws your
attention to the statement he has prepared on the matter, which is included at
Appendix F.”
To me, it appears that Appendix F, which has non-Free clauses, applies.
Have you tried to contact the authors of KANJIDIC ?
Have a nice day,
--
Charles Pless
Le Sat, Mar 15, 2014 at 01:32:40PM +0900, Charles Plessy a écrit :
> Le Mon, Mar 10, 2014 at 12:13:34AM +1100, Aníbal Monsalve Salazar a écrit :
> > On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
> > >
> > > Speaking of Upstream, I see a new release,
Le Mon, Mar 10, 2014 at 12:13:34AM +1100, Aníbal Monsalve Salazar a écrit :
> On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
> >
> > Speaking of Upstream, I see a new release, version 1.13.5. Would you
> > like me to upload it ?
>
> Yes, please.
Uplo
nless you
want public researchers to buy more computers with your tax money.
Have a nice day,
Charles
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Tsurumi, Kanagawa, Japan
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with a s
d to contact the upstream author ?
Speaking of Upstream, I see a new release, version 1.13.5. Would you like me
to upload it ?
Cheers,
Charles
--
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Le Thu, Feb 20, 2014 at 10:36:57AM +0100, Andreas Tille a écrit :
>
> While I agree that this would solve this formal problem I think
> providing (potentially large chunks of) data which are only to run a
> test and force people to create various copies of them is an insane
> consequence of the re
ite
permissions.
Have a nice day,
--
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Control: severity -1 wishlist
Le Thu, Jan 23, 2014 at 12:17:40PM +0100, Andreas Beckmann a écrit :
> Package: staden-io-lib
> Version: 1.13.3-2
> Severity: serious
> Justification: fails to build from source
>
> staden-io-lib only built successfully on i386-any and amd64-any, all
> other architec
why. Do you have an explanation ?
In the meantime, I am downgrading the severity of this bug: I have confirmed in
a minimal system (Debian image for the Amazon cloud) that pv-grub-menu is
installable.
Have a nice week-end,
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Tsurumi, Kanagawa, Japan
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the error is there but it does not interrupt the
installation. Does piuparts pass some special parameters to the shell to make
it more sensible to errors ?
Nevertheless, I will fix this bug anyway.
Have a nice day,
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Tsurumi, Kanagawa, Japan
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Le Sat, Nov 30, 2013 at 04:01:50AM -0500, Sang Kil Cha a écrit :
>
> Yes I think I did submitted it to upstream.
Hi again,
I do not see it in the Upstream bugtracker. Can you also submit it there ?
http://sourceforge.net/p/staden/bugs/
Have a nice Sunday,
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Debi
thanks for the report. Have you also submitted it upstream ? Do you
have a suggestion on how to solve the problem ?
Cheers,
--
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http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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missing from the Debian copyright file.
Have a nice Sunday,
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http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Le Sun, Nov 03, 2013 at 08:44:01PM -0700, Adam Conrad a écrit :
> On Mon, Nov 04, 2013 at 08:36:52AM +0900, Charles Plessy wrote:
> >
> > I would recommend to simply stop distributing it on PowerPC, and invest
> > further
> > work only if we have a user asking for it.
of the hmmer
Debian packages on PowerPC.
I would recommend to simply stop distributing it on PowerPC, and invest further
work only if we have a user asking for it.
Have a nice day,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
it remain in Debian. It's one of those libraries that I
> think Debian needs to have in order to be a legitimate Java platform.
Thanks Tony for the help, feel free to upload if you are the first to have
time.
Cheers,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
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Le Wed, Sep 25, 2013 at 07:20:27AM +0200, intrigeri a écrit :
>
> Charles Plessy wrote (23 Sep 2013 00:31:50 GMT) :
> > I think that pandoc lost by accident its recommendation (via CDBS) on
> > pandoc-data.
>
> pandoc 1.11.1-4 does recommend pandoc-data, so perhaps the
Le Tue, Sep 24, 2013 at 10:10:13AM +0300, Damyan Ivanov a écrit :
> Package: src:umegaya
> Version: 0.13
> Severity: serious
> Justification: FTBFS
>
> umegaya fails to build in a current clean sid pbuilder chroot:
>
> debian/rules build
> dh build
>dh_testdir
>dh_auto_configure
>deb
Le Mon, Sep 23, 2013 at 08:04:53AM +0200, Emmanuel Bourg a écrit :
> Le 23/09/2013 02:05, Charles Plessy a écrit :
>
> > - Is wss4j still needed in Debian ? Would Eucalyptus 3.0 still use it ?
> > - Is the Java team interested by taking it over, in any case ?
>
> The
or directory)
> > make[1]: *** [override_dh_auto_build] Error 1
Thanks for your work on pandoc, and have a nice day,
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340: Compile failed; see the
> > compiler error output for details.
> >
> > Total time: 6 seconds
> > make: *** [debian/stamp-ant-build] Error 1
>
> The full build log is available from:
>
> http://aws-logs.debian.net/ftbfs-logs/2013/09/22/wss4j_1.5.8+svntag-2_unstable.log
Have a nice day,
--
Charles Plessy
Tsurumi, Kanagawa, Japan
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Package: emboss-explorer
Version: 2.2.0-7
Severity: grave
Hello everybody.
I just tried emboss-explorer on a minimal Wheezy system (7.1), and it
does not work out of the box. For each item in the menu, the main
frame reports "[item name] is not a valid EMBOSS application".
There are patches on
CC-BY-SA 2.0. This is unfortunate, as Debian's FTP team does not consider it
Free.
Perhaps you can clarify this with the Inkscape authors ? Maybe they intended
GPL-2 anyway...
Cheers,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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Le Mon, Aug 05, 2013 at 04:23:20AM +0200, Hector Oron a écrit :
>
> 2013/8/5 Hector Oron :
> > 2013/8/5 Charles Plessy :
>
> >> do you think that you could send a patch for this ?
>
> > Find it attached
>
> Note I have uploaded package to delayed queue 4,
kage build logs at:
> <https://buildd.debian.org/status/package.php?p=phyml&suite=sid>
>
> Consider disabling SSE instructions on non Intel platforms.
Hi Hector,
do you think that you could send a patch for this ?
Have a nice day,
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Charles Plessy
Debian Med packaging tea
Le Sat, Aug 03, 2013 at 02:47:56PM +0200, gregor herrmann a écrit :
> On Sat, 03 Aug 2013 21:26:49 +0900, Charles Plessy wrote:
>
> Still, I'd like to have a review from someone who has used
> Devel::CheckLib before ...
Not me, sorry :(
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Charles
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nic came up with a nice
> > patch.
> > Unfortunately I don't remember the package anymore ...
>
> Here we are:
> https://github.com/OpenGuides/OpenGuides/pull/71
>
> I've now pushed a patch to git along these lines; reviews welcome!
Thanks Gregor. I just corrected th
really prefer to use the Upstream init scripts, but the patch you sent
seems to install new scripts in the debian directory instead. Could you give
us a bit more explanations on your patch ?
Have a nice day,
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Tsurumi, Kanagawa, Japan
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merge 709190 713284
thanks
> > ERROR: a 'NAMESPACE' file is required
Hi all,
the problem was fixed in a new upstream release. I hope to upload it
within a week.
Cheers,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa
compiles correctly in sid.
> I think I'll just upload a fix for this.
Thanks ! Do you think this is something that should be forwarded upstream ?
Cheers,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Le Wed, Jun 05, 2013 at 09:34:04AM +0900, Charles Plessy a écrit :
>
> - there is a patch for building with a recent BOOST in Ubuntu, which looks
>needed to build on unstable but is not sufficient.
> - the new stable upstream release need further work on BOOST (maybe something
), so I did not have time to see if
the failure related to GCC is still present there.
I also did not have time to try the development version.
Please feel free to take the lead on this issue: I am still very busy and
next weekend I may be away from the keyboard as well.
Cheers,
--
Charles
ase go ahead,
the road is clear.
(But I need to add that on my system, the package builds only with sudo, not
with fakeroot)
Have a nice week-end,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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Dear Victoria,
I am Charles Plessy from the Debian project, working with Andreas Tille on
packaging and distributing software relevant to medecine and bioinformatics.
Thank you for your answers about Pathway Ontology (PW) and sorry to bother you
again. It would tremendously help us if we could
tag 699260 confirmed
severity 699260 grave
thanks
Le Tue, Jan 29, 2013 at 01:28:36PM -0600, Dirk Eddelbuettel a écrit :
>
> Also, CRAN has 1.7-3, you guys are at 1.7-0 of GenABEL. Maybe this even
> changed upstream...
Indeed :)
+*** v. 1.7-3 (2013.01.09)
+
+(2013.01.09)
+Commented the parts r
Le Wed, Jan 09, 2013 at 03:32:34PM +0100, Andreas Tille a écrit :
>
> So we have confirmation about the free distribution from three out of
> seven questionable files. I'm positive we will get more like this and
> would consider it safe to set the bug wheezy-ignore for the moment if
> the release
Le Tue, Jan 01, 2013 at 09:53:09AM +0100, Andreas Tille a écrit :
>
> Could you also somehow publish (if needed internally)
> your e-mail to Gene Ontology to write similar mails to the other
> copyright holders?
Hi Andreas,
It was at the bottom of http://bugs.debian.org/694908#22, and I
just saw
Le Sun, Dec 30, 2012 at 07:46:10PM +0900, Charles Plessy a écrit :
>
> I am contacting Gene Ontology's helpdesk to make sure that we have the right
> to
> redistribute the datai (copy pasted below).
I received excellent news: Gene Ontology is considering to switch to the
Cr
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