Bug#877359: still not reproducible

2018-11-10 Thread Rebecca N. Palmer
Do you know how to test that ? besides building beignet? No, sorry - oclgrind is the other package to ship what appear to be clang .pch files, but I haven't specifically checked whether it's affected. beignet currently isn't the easiest test case, as (as noted above) it has other reproducibi

Bug#913141: [Pkg-opencl-devel] Bug#913141: Bug#913141: beignet: Segmentation fault while running opencv_perf_dnn

2018-11-10 Thread Rebecca N. Palmer
I am able to reproduce this by just compiling (and not running) that on its own (as below, with the affected source in bug913141kernel.cl). Hence, no further action is needed from you. Switching to LLVM 7 (after fixing the other issue you noted) didn't change anything. Removing -cl-fast-relax

Bug#877359: still not reproducible

2018-11-10 Thread Rebecca N. Palmer
On 10/11/2018 14:53, Rebecca N. Palmer wrote: I had been mostly ignoring those because there was no point fixing them if this bug was to be left open, but can try to deal with them today. salsa beignet now has a fix for the INPUT_FILES_BLOCK issue (and uses LLVM 7), so applying this patch to

Bug#908437: firefox: black screen if AppArmor blocks /dev/shm/org.chromium.*

2018-09-09 Thread Rebecca N. Palmer
Package: apparmor-profiles Version: 2.13-8 Control: tags -1 patch Control: affects -1 src:firefox src:firefox-esr Firefox now uses /dev/shm in its multiprocess sandboxing. If AppArmor blocks this (I was using a custom profile, but the packaged profile appears to have the same problem), the Fir

Bug#909379: [Pkg-opencl-devel] Bug#909379: Info received (Bug#909379: segfault when leaving the python3-dbg interpreter)

2018-09-23 Thread Rebecca N. Palmer
This also happens on amd64 (backtrace follows), where it only affects python3.7-dbg (not python3-dbg (3.6) or python3.7). It happens on interpreter exit, not on import. I suspect this is _not_ the new cffi version as such, because: - It does not affect pyzmq or pillow (which also use cffi and

Bug#909439: autopkgtest/debci: misleading "Version" if a new version becomes available during testing

2018-09-23 Thread Rebecca N. Palmer
Package: autopkgtest Version: 5.5 When a new version of the package under test enters the archive during a test run, the tests towards the end of the run may use the binaries of the new version, but debci lists it as a test of the old version. If these tests fail because the new version conta

Bug#909439: autopkgtest/debci: misleading "Version" if a new version becomes available during testing

2018-09-23 Thread Rebecca N. Palmer
On 23/09/2018 18:04, Paul Gevers wrote: I didn't came across it yet. Probably because it's so rare, and easy not to notice if the status didn't change. What kind of logic do you have in mind? If any binary of the package under test is being installed and isn't the same version as the sou

Bug#909439: autopkgtest/debci: misleading "Version" if a new version becomes available during testing

2018-09-24 Thread Rebecca N. Palmer
On 23/09/2018 19:51, Paul Gevers wrote: Hi, On 23-09-18 19:29, Rebecca N. Palmer wrote: What kind of logic do you have in mind? If any binary of the package under test is being installed and isn't the same version as the source, abort the run as a tmpfail.  (At least in a standard debc

Bug#903822: Package(s) broken by CLANG_RESOURCE_DIR change

2018-07-15 Thread Rebecca N. Palmer
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition (or should this be 'nmu'?) The Clang resource directory (clang --print-resource-dir) changes every upstream *bugfix* release (e.g. /usr/lib/llvm-6.0/lib/clang/6.0.1/ ), but clang's rev

Bug#873331: RM: llvm-toolchain-3.8 (and hence kfreebsd mesa)

2018-07-22 Thread Rebecca N. Palmer
Control: unblock -1 by 873408 Control: block 893401 by 873408 (julia has now moved to LLVM 4.0) beignet, and presumably mesa, use LLVM 3.8 on kfreebsd-* because there isn't anything newer available there. LLVM 3.9 to 6.0~svn315736 were attempted and FTBFS on kfreebsd-*; these bugs do not appe

Bug#949024: g++: internal compiler error on beignet + llvm10

2020-01-16 Thread Rebecca N. Palmer
Package: g++-9 Version: 9.2.1-23 Control: affects -1 src:beignet Trying to build beignet with llvm 10 and the default -std fails with this internal compiler error. (See attached for exact changes; it previously used -std=c++0x, but that fails with LLVM 10 because it can't find std::index_sequ

Bug#949024: g++: internal compiler error on beignet

2020-01-16 Thread Rebecca N. Palmer
Control: retitle -1 g++: ICE at cp/pt.c:15779 on beignet in -std=gnu++14 or higher This also happens with LLVM 9 (which makes sense given that the error message points to code in beignet itself): LLVM 9LLVM 10 -std=c++0x successstd::index_sequence fail -std

Bug#949024: g++: internal compiler error on beignet

2020-01-17 Thread Rebecca N. Palmer
creduce output (and yes, this isn't a valid program, but it still shouldn't ICE): template struct a { enum { b }; }; class c; template class __attribute__((aligned((a::b d {}; class : d<0> {

Bug#949767: causes autopkgtest regression in libgpuarray

2020-01-24 Thread Rebecca N. Palmer
Source: libffi Version: 3.3-3 Severity: serious (This is a "block migration while I investigate" bug: it may well be downgraded or reassigned when I know more.) https://ci.debian.net/packages/libg/libgpuarray/unstable/amd64/ libffi is one of the few that changed: https://ci.debian.net/data/packa

Bug#764081: debci log and test-depends

2020-01-24 Thread Rebecca N. Palmer
Paul Gevers wrote: Unfortunately, old data on ci.d.n is flushed (too much disk space), so I need a new incident to properly investigate what is going on, as I haven't spotted the issue yet in the code. libgpuarray #949767, unstable 2020-01-24: https://ci.debian.net/packages/libg/libgpuarray/uns

Bug#949767: causes autopkgtest regression in libgpuarray

2020-01-25 Thread Rebecca N. Palmer
(The above debci log is misleading due to #764081; pocl also changed, and the failure goes away on using the old pocl.) It looks like this fails because it is reading the result before the computation has finished: - On a failure, the np.asarray(gr) passed to assert_allclose doesn't match cr (

Bug#949767: libgpuarray pocl out-of-order queues

2020-01-26 Thread Rebecca N. Palmer
Control: reassign -1 src:libgpuarray,src:pocl Control: retitle -1 wrong results in gemm(batch) in out-of-order queues libgpuarray checks whether the device supports out-of-order queues, and requests one if it does (src/gpuarray_buffer_opencl.c:155,185). pocl 1.3 says it doesn't support out-of-

Bug#962335: FTBFS: new upstream version available with bug fixes

2020-06-08 Thread Rebecca N. Palmer
Control: fixed -1 0.25.3+dfsg2-2 Control: tags -1 patch This is fixed in unstable, and in Salsa's experimental branch. I didn't consider it worth the buildd resources to upload in experimental, without also doing some work on other issues such as #877419. (1.0 is in experimental and not unst

Bug#950430: pymatgen will need pandas 1.0

2020-06-10 Thread Rebecca N. Palmer
Control: block 962268 by -1 A proposed new package (pymatgen #962268) requires pandas >= 1.0.1. Current status: - pandas 1.0.4 is in experimental, and FTBFS on s390x and ppc64el - psychopy (previously untestable) works - python-biom-format still fails - Others have not been retested The current

Bug#962712: please add support for x13as

2020-06-12 Thread Rebecca N. Palmer
On 12/06/2020 14:53, Sébastien Villemot wrote: I did not investigate whether installing the x13as package is enough to get support from statsmodels The documentation implies yes. If you want to check, there are tests (statsmodels/tsa/tests/test_x13.py), which SKIP if x13as is not found.

Bug#863507: numba: test collection crashes/errors out [armel, ppc64el]

2020-06-14 Thread Rebecca N. Palmer
Control: retitle -1 test collection crashes/errors out [armel, ppc64el] The tests now do get run on armhf, but still don't on armel and ppc64el. This appears to be because some test modules crash/abruptly exit *during test collection*. (pytest-xdist can start a new worker after a crash, but

Bug#863511: numba: segfaults on ppc64el

2020-06-14 Thread Rebecca N. Palmer
Control: tag -1 - fixed-upstream Upstream discussion suggests this was fixed ... but then reintroduced in the move to LLVM 8: https://github.com/numba/numba/issues/4026 test_array_reshape is still one of the tests that crashes (but a full test run doesn't even get that far because test_typedl

Bug#950430: numpy 1.19 vs pandas 1.0

2020-06-22 Thread Rebecca N. Palmer
Numpy 1.19 is currently an ~rc in experimental, and recently became final upstream. Both pandas 0.25.x and 1.0.x currently FTBFS with numpy 1.19, but I think 1.0.x is fixed in Salsa, while 0.25.x looks doable but more work. (It has a build failure that looks like https://github.com/pandas-dev

Bug#964791: [Pkg-opencl-devel] Bug#964791: libclc-amdgcn: OpenCL fails to start

2020-07-10 Thread Rebecca N. Palmer
This error occurs when clinfo is run with mesa-opencl-icd installed; it does _not_ require actual AMD hardware. Previous similar bugs suggest that compiling libclc/mesa-opencl-icd with -Bsymbolic, and/or statically linking them to LLVM/Clang, might help: https://bugs.debian.org/cgi-bin/bugrepo

Bug#966393: pandas: FTBFS: TypeError: use() got an unexpected keyword argument 'warn'

2020-07-29 Thread Rebecca N. Palmer
Control: found -1 0.25.3+dfsg2-3 Control: tags -1 fixed-upstream patch (untested) Probably matplotlib 3.3: https://github.com/pandas-dev/pandas/pull/35323

Bug#966393: pandas: FTBFS with matplotlib 3.3

2020-07-30 Thread Rebecca N. Palmer
Control: tags -1 - patch That's not enough by itself: it does fix that particular error, but exposes 16 other failures, some of the form ValueError: The number of FixedLocator locations (8), usually from a call to set_ticks, does not match the number of ticklabels (4). and some datetime iss

Bug#950924: python-feather-format: FTBFS with pandas 1.0: test_boolean_object_nulls / test_sparse_dataframe fail

2020-08-24 Thread Rebecca N. Palmer
The patch still works for me (on amd64, dpkg-buildpackage in a chroot with experimental python3-pandas(-lib), sid everything else; keep the existing pandas025.patch). Anything obviously different about your test environment?

Bug#969050: pytest-asyncio: AttributeError: type object 'Function' has no attribute 'from_parent' with our current pytest

2020-08-26 Thread Rebecca N. Palmer
Package: python3-pytest-asyncio Version: 0.14.0-1 Severity: serious Control: affects -1 src:pandas pytest-asyncio 0.14 tries to use pytest Function.from_parent (e.g. at pytest_asyncio/plugin.py:39), which does not exist in the archive's current version of pytest (4.6). This causes at least pan

Bug#969050: pytest-asyncio: AttributeError: type object 'Function' has no attribute 'from_parent' with our current pytest

2020-08-26 Thread Rebecca N. Palmer
This bug can happen even if the tests being run don't actually use pytest_asyncio (e.g. see pandas 1.0.5+dfsg-2); to avoid it one needs to not have it installed, i.e. remove the build/test-dependency. This suggests that the current pytest-asyncio package is totally unusable without a more rece

Bug#790925: not Re: appears to be fixed

2020-09-03 Thread Rebecca N. Palmer
Control: reopen -1 Looks like pytest --forked --runxfail doesn't work properly (probably related to https://github.com/pytest-dev/pytest-forked/pull/34#discussion_r436140456), so that wasn't a valid test.

Bug#969648: dask: autopkgtest fail with pandas 1.1 - datetime issues

2020-09-06 Thread Rebecca N. Palmer
Package: python3-dask Version: 2.11.0+dfsg-1 Tags: fixed-upstream With pandas 1.1.x from experimental, dask fails 8 of its tests, at least mostly datetime-related. Log: https://ci.debian.net/data/autopkgtest/unstable/amd64/d/dask/6900447/log.gz Upstream fix (untested): https://github.com/da

Bug#969649: skbio: FTBFS/test fail with pandas 1.1

2020-09-06 Thread Rebecca N. Palmer
Package: python3-skbio Version: 0.5.6-2 With pandas 1.1 from experimental, python-skbio fails 3 of its tests. Log: https://ci.debian.net/data/autopkgtest/unstable/amd64/p/python-skbio/6900486/log.gz

Bug#969650: transition: pandas 1.0 -> 1.1

2020-09-06 Thread Rebecca N. Palmer
Package: python3-pandas Version: 1.0.5+dfsg-3 Severity: wishlist Control: block -1 by 969648 969649 pandas 1.1.x is currently in experimental. The upstream description suggests this is not supposed to be an API break, but does have new warnings. Packages tested with it (build + autopkgtest):

Bug#968210: statsmodels: still broken on armel

2020-09-10 Thread Rebecca N. Palmer
Control: severity -1 important Control: retitle -1 statsmodels: on armel may give wrong answer or crash This bug is no longer an FTBFS as the tests are now ignored on armel, but still exists. (At least as a crash; we stopped using --forked, so don't know if there are still also wrong answers.)

Bug#963653: libgpuarray: FTBFS with Sphinx 3.1: File "/usr/lib/python3/dist-packages/sphinx/domains/c.py", line 3093, in object_type / raise NotImplementedError()

2020-06-28 Thread Rebecca N. Palmer
Control: reassign -1 src:sphinx Control: retitle -1 sphinx breaks python3-breathe < 4.15 Control: tags -1 patch This does not happen with breathe 4.19 (from experimental); this upstream report suggests it happens with breathe < 4.15. https://github.com/sphinx-doc/sphinx/issues/7424 Hence, a f

Bug#963659: pybind11: FTBFS with Sphinx 3.1

2020-06-28 Thread Rebecca N. Palmer
This looks like #963653, which is fixed by using python3-breathe 4.19 from experimental. However, doing that here gives a different error: sphinx-build -b html -d .build/doctrees . .build/html Running Sphinx v3.1.1 making output directory... done 1.8.17 /home/rnpalmer/Debian/builds/stackbuild

Bug#954554: python-asynctest: FTBFS, maybe-RM

2020-06-29 Thread Rebecca N. Palmer
Is the above intended as a proposal to remove asynctest? The rdeps in Debian are hypercorn, python-aioresponses, and (for autopkgtest only) python-fakeredis. hypercorn upstream have stopped using it: https://gitlab.com/pgjones/hypercorn/-/commit/80e2ad5db107c42d42471ea64764d2b42202349c The ot

Bug#963817: Breaks?

2020-06-29 Thread Rebecca N. Palmer
On 29/06/2020 20:59, Paul Gevers wrote: Does this mean that numpy should add a Breaks relation on the old pandas version to avoid upgrading numpy but not pandas on user systems? Not really - the constant was replaced by its value, so the only 1.19-related change outside of tests is the reworde

Bug#956021: Syntax warnings while upgrading python3-pandas

2020-04-06 Thread Rebecca N. Palmer
Control: tag -1 upstream patch (untested) This is in test code not library code, so it should be fine to ignore the warnings for now. A nearby comment notes that a simple == won't work on all the types that keys[0] can be, but this probably will: --- a/pandas/tests/frame/test_alter_axes.py

Bug#954157: test-depends outside main prohibited

2020-04-07 Thread Rebecca N. Palmer
Control: reopen -1 Control: reassign -1 autopkgtest/5.12.1 Control: tags -1 patch Then we should change the documentation to state the actual policy... (Found this after https://lists.debian.org/debian-med/2020/04/threads.html#00074 ) --- a/doc/README.package-tests.rst +++ b/doc/README.packag

Bug#954157: test-depends outside main prohibited

2020-04-07 Thread Rebecca N. Palmer
On 07/04/2020 18:55, Paul Gevers wrote: However, you can change the phrasing. E.g.: For Debian, the ftp-master have ruled that tests must not execute code they download. In particular, tests must not use external repositories to depend on software (as opposed to data) that is not in Debian. Howe

Bug#956194: dependencies Re: ITP: streamlit

2020-04-08 Thread Rebecca N. Palmer
Existing discussion of this package's dependencies: https://lists.debian.org/debian-med/2020/04/threads.html#00065 Summary: - Python part: 2 tests depend on tensorflow (which is known to be hard to package), but the rest doesn't so skipping these tests is an option. - JavaScript part: npm2deb sa

Bug#956194: dependencies Re: ITP: streamlit

2020-04-08 Thread Rebecca N. Palmer
It does (and eslint itself is one of the packages that we do have but npm2deb can't find), but even ignoring build dependencies completely and assuming we can use the plotly.js embedded in python3-plotly or r-cran-plotly, the recursive dependency tree is >300 different not-yet-packaged modules.

Bug#955056: workaround Re: snakemake: FTBFS with Sphinx 2.4: AttributeError: 'member_descriptor' object has no attribute 'expandtabs'

2020-04-08 Thread Rebecca N. Palmer
An upstream comment says common.py:lazy_property is the problem item, and excluding that from the documentation does make Sphinx succeed (I haven't tested a whole build): --- snakemake-5.10.0.orig/docs/conf.py +++ snakemake-5.10.0/docs/conf.py @@ -107,6 +107,8 @@ pygments_style = 'sphinx' # If

Bug#953970: python-boto: autopkgtest failure with Python 3.8 as default

2020-04-09 Thread Rebecca N. Palmer
This might fix the remaining errors (but has not been tested): https://docs.python.org/3/library/hmac.html#hmac.new --- tests/unit/utils/test_utils.py~ 2020-04-09 11:02:26.967201681 +0100 +++ tests/unit/utils/test_utils.py 2020-04-09 11:02:26.991202140 +0100 @@ -85,7 +85,7 @@ class TestP

Bug#927787: the new upstream does exist, but not where debian/watch is looking

2020-04-11 Thread Rebecca N. Palmer
Control: reopen -1 Upstream has moved to https://github.com/DataTables (see the base datatables.js package). As well as the Bootstrap 4 styling option, there are two new extensions (RowGroup and SearchPanes), and probably other changes. Each extension is now a separate upstream repository,

Bug#956503: node-lodash-reevaluate: mis-spelled test dependency

2020-04-12 Thread Rebecca N. Palmer
Package: node-lodash-reevaluate Version: 3.0.0-1 Severity: serious Tags: patch debian/tests/control has a stray . in the package name. As there is no package with this name, this causes the test to fail as uninstallable.

Bug#956507: pegjs: stray Provides: nodejs

2020-04-12 Thread Rebecca N. Palmer
Package: pegjs Version: 0.10.0-1 Tags: patch Severity: serious debian/control lists a Provides: nodejs. This is obviously wrong, and also causes the autopkgtest to fail by not installing the real nodejs.

Bug#956512: node-unicode-data: autopkgtest requires outdated version

2020-04-12 Thread Rebecca N. Palmer
Package: node-unicode-13.0.0 Version: 0~20200315+gitfc57d75a-2 Severity: serious Tags: patch The autopkgtest includes the versioned package name (in both debian/tests/control and debian/tests/require). As these were not updated when this changed from 12 to 13, the autopkgtest fails as uninsta

Bug#956517: node-rw: missing test-depends on node-d3-queue

2020-04-12 Thread Rebecca N. Palmer
Package: node-rw Version: 1.3.3-1 Severity: serious Tags: patch One of this package's upstream tests (encoding-async) requires (node-)d3-queue. It build-depends on this, but does not test-depend on it (debian/tests/control last test), so the autopkgtest fails.

Bug#959615: theano: FTBFS: make[2]: pegjs: Command not found

2020-05-03 Thread Rebecca N. Palmer
This is because /usr/bin/pegjs exists in node-pegjs 0.7 but not 0.10. (/usr/share/nodejs/bin/pegjs exists instead; I have not yet checked whether it works.) pegjs maintainer: is this an intentional change or a mistake? The upstream documentation still mentions the command: https://sources.de

Bug#959758: theano: FTBFS with pegjs 0.10

2020-05-04 Thread Rebecca N. Palmer
Package: python3-theano Version: 1.0.4+dfsg-2 Severity: serious #graphlib-dot.js make -C debian/missing-source/graphlib-dot --always-make dist make[2]: Entering directory '/build/theano-1.0.4+dfsg/debian/missing-source/graphlib-dot' pegjs -e 'module.exports' src/dot-grammar.pegjs lib/dot-gramma

Bug#959597: python-schema-salad FTBFS: python-rdflib-jsonld too new

2020-05-11 Thread Rebecca N. Palmer
Control: retitle -1 schema-salad FTBFS: python-rdflib-jsonld too new Control: tags -1 fixed-upstream patch This explicit version check was relaxed (without other changes) in the next upstream commit, though I haven't tested this change: https://github.com/common-workflow-language/schema_salad/

Bug#960436: [Pkg-opencl-devel] Bug#960436: pyopencl: test need unavailable module pygpu_ndarray

2020-05-12 Thread Rebecca N. Palmer
This is probably a reference to this part of the pyopencl source: https://sources.debian.org/src/pyopencl/2019.1.1-1/pyopencl/compyte/ndarray/pygpu_ndarray.cpp/ I have manually run the tests before (while investigating #893050), but I don't know how beyond 'make tests'.

Bug#954647: pandas - that's not the actual problem

2020-03-24 Thread Rebecca N. Palmer
Control: retitle -1 pandas FTBFS: deprecations/improvements fail tests The message on the old title is just a warning, but there are 6 other tests that fail. I think these are all bugs in the tests not the actual package, i.e. using our current pandas is fine. Deprecation warnings in fail-o

Bug#955268: udd watch: "429 too many requests" from GitHub

2020-03-28 Thread Rebecca N. Palmer
Package: qa.debian.org User: qa.debian@packages.debian.org Usertags: udd Some packages have a dash in the watch column of qa.debian.org/developer.php and this error message on tracker.debian.org: uscan had problems while searching for a new upstream version: In watchfile debian/watch, rea

Bug#954647: pandas - maybe fixed but can't build now

2020-03-31 Thread Rebecca N. Palmer
Control: tags -1 pending Control: block -1 by 955399 I just pushed what I think is a fix to salsa, but pandas is currently BD-Uninstallable due to xvfb (#955399), so it has not been tested.

Bug#955471: theano: test failures

2020-04-01 Thread Rebecca N. Palmer
Package: python3-theano Version: 1.0.4-1 Severity: serious Justification: at least one looks like a silently wrong answer The tests passed (at least on amd64) when 1.0.4-1 was first uploaded, but 9 tests failed when it was rebuilt as 1.0.4-1+b1 (for Python 3.8, but I suspect the actual cause wa

Bug#955471: theano: test failures

2020-04-02 Thread Rebecca N. Palmer
Control: severity -1 normal Control: tags -1 upstream patch pending Control: forwarded -1 https://github.com/Theano/theano/pull/6749 On closer inspection, this isn't a "silently wrong answer" bug after all, so lowering the severity. Some parts of it appear to be caused by numpy 1.17 and some p

Bug#966712: statsmodels: debci tests fail

2020-08-02 Thread Rebecca N. Palmer
Control: severity -1 serious Control: tags -1 fixed-upstream patch test_full_output*: https://github.com/statsmodels/statsmodels/issues/6771 test_plot: https://github.com/statsmodels/statsmodels/commit/fa8739e9d2822fe985bc96cd31bb3eb568fd9dc7

Bug#966845: shim-helpers-amd64-signed: does not install itself to /boot/efi

2020-08-03 Thread Rebecca N. Palmer
Package: shim-helpers-amd64-signed Version: 1+15+1533136590.3beb971+7+deb10u1 (I don't know if this is actually a bug) This package does not have any maintainer scripts. Hence, an update places new versions of fbx64+mmx64 in /usr/lib/shim, but leaves the old ones in /boot/efi. shim-signed d

Bug#968208: pandas: TestMoments.test_rolling_quantile_interpolation_options fails on i386 - rounding issue

2020-08-10 Thread Rebecca N. Palmer
Package: python3-pandas Version: 0.25.3+dfsg2-4 Severity: serious One test fails on i386 with a 1-in-last-place difference, probably due to different rounding (x87 extra precision?). https://buildd.debian.org/status/fetch.php?pkg=pandas&arch=i386&ver=0.25.3%2Bdfsg2-4&stamp=1597048961&raw=0

Bug#968210: statsmodels: arm* test failures/crashes

2020-08-10 Thread Rebecca N. Palmer
Package: python3-statsmodels Version: 0.11.1-4 Severity: serious arm64 fail in TestZeroInflatedModel_probit.test_fit_regularized: https://buildd.debian.org/status/fetch.php?pkg=statsmodels&arch=arm64&ver=0.11.1-4&stamp=1597051632&raw=0 https://ci.debian.net/packages/s/statsmodels/testing/arm64/

Bug#968227: UDD/bugs: bad encoding of non-ASCII bug titles

2020-08-11 Thread Rebecca N. Palmer
Package: qa.debian.org User: qa.debian@packages.debian.org Usertags: udd Bug titles containing non-ASCII characters work in the BTS: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966851 but not in the UDD bug listings, or the autoremovals notices generated from them: https://udd.debian

Bug#968210: statsmodels: arm* test failures/crashes

2020-08-12 Thread Rebecca N. Palmer
This doesn't crash when just that test file is run in statsmodels 0.11.1-3 qemu-armel, but this isn't 100% proof that -4 (rather than a dependency) caused it. -4 (built locally in qemu) doesn't crash that way either, which suggests this bug doesn't show up in qemu, and (given the lack of relev

Bug#968210: statsmodels: arm* test failures/crashes

2020-08-16 Thread Rebecca N. Palmer
The TestZeroInflatedModel_probit issue appears to be a failure to converge: as it does trigger warnings of that, and it's already skipped on i386, I intend to ignore it. qemu-arm64: >>> a object at 0x4000d31130> >>> a.res1.params Traceback (most recent call last): File "", line 1, in Attri

Bug#968210: statsmodels: arm* test failures/crashes

2020-08-18 Thread Rebecca N. Palmer
Using --forked revealed that the above is one of 21 test crashes on armel, and that there are also 2 wrong answers. The ones I have tried (the wrong answers and most of the crashes) are not reproducible on qemu-armel.

Bug#1053945: seaborn: test-failing warning in pandas 2.1

2023-12-06 Thread Rebecca N. Palmer
Control: tags -1 fixed-upstream patch Control: severity -1 important (Raising severity because pandas 2.x is currently blocking Python 3.12) This looks like the upstream fix (I haven't tried it in Debian): https://github.com/mwaskom/seaborn/pull/3355 Upgrading to upstream 0.13 would probably als

Bug#1055801: pandas: test failures with Python 3.12

2023-12-07 Thread Rebecca N. Palmer
Control: unblock -1 by 1043240 The remaining test failures (all pytables-related) exist in both pandas 1.5 and 2.1, and do not appear to be known upstream. If they are all crashes rather than wrong answers (which I think they are), I intend to ignore them for now to unblock this, but still c

Bug#1055579: pytables and python 3.12

2023-12-07 Thread Rebecca N. Palmer
That might not be enough: some of pandas' pytables-using tests are still failing in Python 3.12 (see salsa-ci). However, I don't know whether upgrading pytables to a newer upstream would break anything else.

Bug#1055801: pandas: test failures with Python 3.12

2023-12-08 Thread Rebecca N. Palmer
Control: severity -1 normal Control: retitle -1 pandas/pytables: ignored test fails with Python 3.12 Control: found -1 2.1.3+dfsg-1 Control: tags 1057805 pending In 1.5.3+dfsg-8, these are ignored, so are no longer an FTBFS but are still a bug. I don't know whether they're a pandas bug or a pyt

Bug#1044076: influxdb-python and pandas 2.1

2023-12-09 Thread Rebecca N. Palmer
Control: severity -1 important (We would like to transition to pandas 2.1 fairly soon.) This bug can probably be fixed by replacing all 3 instances of pandas.util.testing with pandas.testing. There are also some (unrelated) Python 3.12 issues: self.assertRaisesRegexp -> self.assertRaisesRegex

Bug#1053947: dask and pandas 2.1

2023-12-09 Thread Rebecca N. Palmer
Control: severity -1 important (We would like to transition to pandas 2.1 fairly soon.) This *might* be fixed by https://github.com/dask/dask/pull/10439 and/or https://github.com/dask/dask/pull/10531 It might be best to update to a new upstream version, which would include those and also what

Bug#1053946: tqdm and pandas 2.1

2023-12-09 Thread Rebecca N. Palmer
Control: severity -1 important (We would like to transition to pandas 2.1 fairly soon.) Ignoring these warnings would probably work for now. This is not obviously known upstream, but updating to a newer upstream version might still be worth trying.

Bug#1044069: pandas 2.x test failures

2023-12-09 Thread Rebecca N. Palmer
Control: severity -1 important (We would like to transition to pandas 2.1 fairly soon.) Replacing all instances of pandas.util.testing with pandas.testing should fix the currently visible bug, but I haven't tried it so I don't know whether there are also other bugs.

Bug#1044053: pandas 2.x test failures

2023-12-09 Thread Rebecca N. Palmer
Control: severity -1 important (We would like to transition to pandas 2.1 fairly soon.) These packages are attempting to use .iteritems() on pandas objects, which no longer exists. This can probably be fixed by using .items() instead.

Bug#1044050: intake: can't handle newlines in error messages

2023-12-10 Thread Rebecca N. Palmer
Control: unblock 1043240 by 1044050 Control: severity 1044050 serious Control: merge 1044050 1050623 Control: retitle -1 intake: newlines in error messages Control: tags -1 patch On closer inspection, that's not pandas 2.x related, it's the previously seen failure to handle error messages contai

Bug#1043240: transition: pandas 1.5 -> 2.1

2023-12-10 Thread Rebecca N. Palmer
I'd like to move forward with the pandas 1.5 -> 2.1 transition reasonably soon. Given that pandas 2.x is *not* required for Python 3.12 (but is required for Cython 3.0), should we wait for the Python 3.12 transition to be done first? These are broken by pandas 2.x and have a possible (but un

Bug#1056828: pandas and Cython 3

2023-12-10 Thread Rebecca N. Palmer
Control: block -1 by 1043240 Control: tags -1 fixed-upstream fixed-in-experimental pandas 2.1.4 in experimental uses Cython 3, without known issues. We are currently discussing (in #1043240) whether to move that version to unstable, given that it would cause other breakage.

Bug#1031414: Proposed RM: libgpuarray - abandoned, RC-buggy

2023-12-10 Thread Rebecca N. Palmer
libgpuarray has been de facto abandoned upstream since 2018, and is currently unused in Debian. (Its original user was theano, which was removed in #1042574.) It currently has what may or may not be a wrong-answer bug (#1031414), and two broken-by-transition bugs. (The latter two _might_ be

Bug#1056504: python-sparse in Python 3.12

2023-12-10 Thread Rebecca N. Palmer
Control: tags -1 fixed-upstream This was fixed upstream by https://github.com/pydata/sparse/commit/266af7307b5232a37daa1d7659f02faf6a42e46e . It still exists here because debian/patches/fix-test-fails-on-i386.patch effectively reverses that fix, possibly by accident.

Bug#1055847: python-sparse crash on arm64 (and possibly other non-x86)

2023-12-10 Thread Rebecca N. Palmer
At least on arm64, this appears to be a crash in a @numba.jit function. Given numba's known issues on non-x86 (e.g. #1033907), this suggests that actually fixing it _may_ not be reasonable. In pandas I don't recommend/build/test-depend on numba on the problem architectures, but python-sparse h

Bug#1055848: cfgrib failing to find eccodes

2023-12-10 Thread Rebecca N. Palmer
Control: retitle -1 cfgrib: test failure - can't find eccodes Because we now enforce that build-depends of testing must be in testing, this bug is blocking python-xarray and hence pandas from testing, so is more important than this package's popcon would suggest. I consider it likely that the

Bug#1043240: transition: pandas 1.5 -> 2.1

2023-12-11 Thread Rebecca N. Palmer
On 10/12/2023 20:16, Julian Gilbey wrote: > [...]I'd be in favour of doing the pandas > transition now, which will allow Cython 3.0 to move into unstable. Cython 3 is already in unstable; pandas is currently using cython-legacy. And yes, my list of packages broken by pandas 2.x is those identifi

Bug#1043968: How to handle upstream dependencies on PyPI tzdata?

2023-08-13 Thread Rebecca N. Palmer
Note also that PyPI tzdata includes old timezone names (US/Eastern etc) that were recently moved to tzdata-legacy in Debian, and that the pandas tests/examples heavily use these names.

Bug#1042574: RM: theano, keras, deepnano -- RoM (theano), broken by numpy 1.24, theano mostly abandoned upstream

2023-07-30 Thread Rebecca N. Palmer
Package: ftp.debian.org User: ftp.debian@packages.debian.org Usertags: remove Control: affects -1 src:theano src:deepnano src:keras Control: reopen 1026539 Control: reopen 1027215 theano has been mostly abandoned upstream since 2018. (The Aesara fork is not abandoned, but includes interface

Bug#1042574: RM: theano -- RoM, broken by numpy 1.24, theano mostly abandoned upstream

2023-07-31 Thread Rebecca N. Palmer
Control: retitle -1 RM: theano -- RoM; broken, mostly abandoned On 31/07/2023 13:49, Andrius Merkys wrote: Maybe it is worth to keep src:keras for the time being, until keras 3 arrives? Similar things have happened before - src:llvm-toolchain-9 was removed well before src:beignet, making src:

Bug#1042574: Removed package(s) from unstable

2023-08-04 Thread Rebecca N. Palmer
Control: reopen -1 Please also remove theano from experimental.

Bug#1043048: openblas: gives wrong results on mips64el, ignores test failures

2023-08-05 Thread Rebecca N. Palmer
Package: libopenblas0-pthread Version: 0.3.23+ds-2 Control: affects -1 src:statsmodels Severity: serious Justification: the default BLAS should NOT silently give wrong answers (i.e. if there's no easy way to actually fix this, please switch the default on mips64el back to atlas, and consider remo

Bug#1043048: openblas: gives wrong results on mips64el, ignores test failures

2023-08-05 Thread Rebecca N. Palmer
The most obviously relevant change between those is that the installed BLAS changed from atlas to openblas. It looks like this wasn't a change of default, but that experimental uses libatlas and unstable uses libopenblas. (I don't know why, as the obvious dependency chain is src:statsmodels -

Bug#1043048: openblas: gives wrong results on mips64el, ignores test failures

2023-08-05 Thread Rebecca N. Palmer
Control: tags -1 upstream Upstream CI's mips64 qemu test has what look like the same FATAL ERRORs, in MIPS64_GENERIC but not SICORTEX, but is still listed as passing. Which suggests that they also have both parts of this bug (wrong answers on mips64el, and errors not actually failing the buil

Bug#1043093: dask: test fail with pandas 2.0

2023-08-05 Thread Rebecca N. Palmer
Package: python3-dask Version: 2022.12.1+dfsg-2 Tags: fixed-upstream pandas 2.0's test_dask fails (in Salsa CI). Upstream reports suggest that this is fixed in dask 2023.2, but I haven't checked whether upgrading dask breaks anything else. https://github.com/dask/dask/issues/10164 (I also co

Bug#1043048: Please give back statsmodels on mips64el Re: (Bug#1043048: fixed in openblas 0.3.23+ds-3)

2023-08-07 Thread Rebecca N. Palmer
This does seem to have worked: the openblas build log no longer contains FATAL ERROR. Hence, please give back statsmodels on mips64el. (DMs aren't allowed to use the self-service link.)

Bug#1043240: transition: pandas 1.5 -> 2.0

2023-08-07 Thread Rebecca N. Palmer
Package: python3-pandas Version: 1.5.3+dfsg-4 Severity: wishlist Control: block -1 by 1043093 pandas 2.0 is now in experimental. However (as you might expect from that version number), it breaks around 40 other packages, and it is hence likely to be some time before it moves to unstable. Ups

Bug#1043240: transition: pandas 1.5 -> 2.0

2023-08-07 Thread Rebecca N. Palmer
These packages appear to be broken *by* pandas 2.0 - I will file individual bugs when I have time: augur cnvkit dask dials dyda emperor esda influxdb-python jsonpickle macsyfinder mirtop mlpack pyranges python-altair python-anndata python-biom-format python-feather-format python-nanoget python-p

Bug#1044076: pandas 2.x

2024-01-21 Thread Rebecca N. Palmer
What, if anything, blocks the above fix from being applied now? tqdm, influxdb-python and seaborn are the highest-popcon packages broken by pandas 2.x.

Bug#1043240: transition: pandas 1.5 -> 2.1

2024-01-22 Thread Rebecca N. Palmer
On 22/01/2024 11:51, Julian Gilbey wrote: Please could we wait until the "Python 3.12 is a supported version" transition is completed? How are you defining that? python3-defaults 3.11.6+ in testing? (I was previously told 3.12-supporting pandas and numpy in testing, which has happened. I d

Bug#1044076: influxdb-python and pandas 2.1

2024-01-28 Thread Rebecca N. Palmer
That's not the only problem: some of the tests mix timestamps in slightly different formats (with and without fractional seconds), which is no longer allowed by default: https://pandas.pydata.org/pandas-docs/version/2.1.4/whatsnew/v2.0.0.html#datetimes-are-now-parsed-with-a-consistent-format Th

Bug#1053945: seaborn: test-failing warning in pandas 2.1

2024-01-28 Thread Rebecca N. Palmer
The above by itself wasn't enough, but what I have now pushed to Salsa is. Please upload it.

Bug#1053946: tqdm and pandas 2.1 / python 3.12

2024-01-28 Thread Rebecca N. Palmer
Control: retitle 1058160 tqdm: tests failing/hanging in Python 3.12 That works for #1053946 (pandas 2.x), but #1058160 (python 3.12) is more than a single hanging test, and it's not immediately obvious what should be done. Attempted fix (caution, currently just skips the hanging test) and fa

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