Bug#918206: Pandas new version (not?)

2019-02-12 Thread Rebecca N. Palmer
Given the soft freeze, the new upstream version is probably no longer an option for buster. Just setting __array_priority__ fails, but with a message that suggests also including the test_analytics part of that upstream commit would work; I haven't yet had time to try this. left = o

Bug#880245: statsmodels

2019-02-13 Thread Rebecca N. Palmer
Is the subject line a leftover, or are you actually proposing to move 0.9.0 from experimental to unstable (which is not generally allowed in soft freeze)? The upstream fix for #880245 (the original reason given for wanting the new version) is supposedly https://github.com/statsmodels/statsmo

Bug#918206: Pandas new version (not?)

2019-02-13 Thread Rebecca N. Palmer
This builds (including build-time tests; haven't tried the autopkgtest). Description: Fix np.array @ DataFrame matrix multiplication Author: jbrockmendel Origin: upstream https://github.com/pandas-dev/pandas/commit/ad2a14f4bec8a004b2972c12f12ed3e4ce37ff52 Bug-Debian: https://bugs.debian.org/91

Bug#880245: statsmodels

2019-02-13 Thread Rebecca N. Palmer
On 13/02/2019 09:10, Andreas Tille wrote: Any volunteer to backport the relevant changes I pushed to Git right now to 0.8.0? I intend to try tomorrow, if the uploaders don't say anything first. I'm actually wondering why the package did not got any removal from testing warning (or did I misse

Bug#904623: lintian: flaky and skippable trigger unknown-runtime-tests-restriction

2018-07-25 Thread Rebecca N. Palmer
Package: lintian Version: 2.5.94 Severity: minor Control: tags -1 patch autopkgtest recently (5.4) added two new Restrictions, flaky and skippable. Lintian does not know about these and hence reports unknown-runtime-tests-restriction. This can probably be fixed by adding them to the list at

Bug#901804: autopkgtest: consider using exit status 8 ("no tests found") if every test was ignored

2018-07-27 Thread Rebecca N. Palmer
I take this discussion to mean the existence of autopkgtests is considered a good thing even when they can't be run on ci.debian.net (should we explicitly say that somewhere?). I hence added some to beignet (an OpenCL driver, so hardware specific). Simon McVittie wrote: At some point I might

Bug#904841: tracker.debian.org: Bugs total double-counts bugs with patches

2018-07-28 Thread Rebecca N. Palmer
Package: tracker.debian.org Severity: minor Control: tags -1 patch The 'all' bugs count double-counts 'patch' bugs (but not 'help' or 'newcomer' bugs, which also appear both there and in a severity category), e.g. https://tracker.debian.org/pkg/debhelper Can probably be fixed (though I haven'

Bug#904979: autopkgtest: add option to mark tests as trivial

2018-07-30 Thread Rebecca N. Palmer
Package: autopkgtest Severity: wishlist Control: block -1 by 901804 (From #901804 discussion, moving to a new bug as requested.) On 29/07/18 14:58, Paul Gevers wrote: [...]> On 27-07-18 22:49, Rebecca N. Palmer wrote: [...] Simon McVittie wrote: At some point I might add a way to mark s

Bug#901804: autopkgtest: consider using exit status 8 ("no tests found") if every test was ignored

2018-07-30 Thread Rebecca N. Palmer
Control: tags -1 patch (in https://salsa.debian.org/ci-team/autopkgtest/merge_requests/24) On 29/07/18 14:58, Paul Gevers wrote: I think we should keep neutral-to-fail a regression. I agree that neutral (tests all ignored) -> fail should be a regression. I was referring to the no tests -> fa

Bug#904979: autopkgtest: add option to mark tests as trivial

2018-07-31 Thread Rebecca N. Palmer
On 31/07/18 14:59, Paul Gevers wrote: Not sure if that would be the same value of trivial. I agree that "should trivial be a defined Restriction" and "should autodep8 and similar checks that we can import/link to/etc this (i.e. checking its top-level module for syntax errors/missing dependenc

Bug#905153: autodep8: set Restrictions: allow-stderr on generated tests

2018-07-31 Thread Rebecca N. Palmer
Package: autodep8 Severity: wishlist (Moving to a new bug: note that I have not decided whether I agree with this proposal.) On 31/07/18 14:59, Paul Gevers wrote: Hi Rebecca, On 30-07-18 08:57, Rebecca N. Palmer wrote: On 29/07/18 14:58, Paul Gevers wrote: [...] A similar idea has come to

Bug#905153: autodep8: set Restrictions: allow-stderr on generated tests

2018-07-31 Thread Rebecca N. Palmer
On 01/08/18 02:58, Antonio Terceiro wrote: FWIW, most of the supported package types do already set allow-stderr. From a quick look, of 4 of 9 explictly set allow-stderr, and 2 append `2>/dev/null` to the Test-Command. Those being dkms, go, octave, r (allow-stderr) and ruby (2>&1). I don't s

Bug#901487: theano.gpuarray unusable - needs newer pygpu

2018-06-13 Thread Rebecca N. Palmer
Package: python3-pygpu,python3-theano theano.gpuarray does not work because the currently packaged version of pygpu is too old for it. Is there a reason for not packaging 0.7.x or have you just not got around to it? According to codesearch, theano is the only package using pygpu, so compati

Bug#901662: sphinx: RTD theme users FTBFS with dh_sphinxdoc: DOCUMENTATION_OPTIONS does not define URL_ROOT

2018-06-16 Thread Rebecca N. Palmer
Source: sphinx Version: 1.7.5-1 Severity: serious Control: tags -1 patch Control: affects -1 src:theano src:python-jira (These are the ones I've actually checked; I suspect most/all of the ~100 packages that build-depend on *-sphinx-rtd-theme are affected.) sphinx's included themes have layout.ht

Bug#871208: python-xarray tests failures

2017-11-23 Thread Rebecca N. Palmer
Control: tags -1 upstream fixed-upstream This appears to be 2 separate bugs, both triggered by using pandas 0.20 and fixed upstream. groupby_bins: https://github.com/pydata/xarray/issues/1386 https://github.com/pydata/xarray/pull/1390 test_sel: this is really a pandas bug (fixed in 0.21, but

Bug#882559: python-xarray FTBFS - GenericNetCDFDataTest.test_cross_engine_read_write_netcdf3 failed

2017-11-23 Thread Rebecca N. Palmer
Package: python3-xarray Version: 0.9.2-1 Severity: serious Control: tags -1 upstream Two netcdf tests fail in current sid (see log below). This is known upstream as https://github.com/pydata/xarray/issues/1721 , according to which the actual problem is that scipy has been writing netcdf files

Bug#877367: www.debian.org: Please consider adding redirects for old Policy chapters/appendices

2017-11-24 Thread Rebecca N. Palmer
This breaks the (6 according to codesearch [0]) links from Developers' Reference to specific Policy sections. [0] https://codesearch.debian.net/search?q=package%3Adevelopers-reference+url-debian-policy%3Bch-

Bug#614807: debian-policy: Please document autobuilder-imposed build-dependency alternative restrictions

2017-11-30 Thread Rebecca N. Palmer
Should this also make explicit which Debian suites have this restriction? I thought this rule also applied to backports having found [0] in a list archive search, and hence have been explicitly changing dependencies for backports [1] instead of using alternatives. However after finding this p

Bug#877367: www.debian.org: Please consider adding redirects for old Policy chapters/appendices

2017-12-02 Thread Rebecca N. Palmer
Laura Arjona Reina wrote: I didn't add exact rules to match www.debian.org/doc/debian-policy/footnotes.html#f1 to www.debian.org/doc/debian-policy/#id1 etc because I'm not sure all the "old" footnotes and the "new" footnotes match in content They don't - they're not even unique in the one-page ve

Bug#882486: [Pkg-opencl-devel] Bug#882486: Not working under wayland?

2017-12-03 Thread Rebecca N. Palmer
Control: retitle -1 unnecessarily scary warning under Wayland I also see this warning, but beignet still works after it. Is this also the case for you (to check, run /usr/lib/x86_64-linux-gnu/beignet/utest_run from the beignet-dev package) or is your beignet actually broken?

Bug#883405: plasmashell crashes when multiple right-click menus used

2017-12-03 Thread Rebecca N. Palmer
Package: libqt5wayland5,plasma-workspace-wayland Version: 5.7.1~20161021-2,4:5.8.6-2.1 Severity: minor To reproduce (>50% but not 100% reproducible): - right-click on two areas, opening both their right-click menus (the example below was two application launchers, but the desktop then an empty

Bug#901111: (no subject)

2018-06-20 Thread Rebecca N. Palmer
Control: tags -1 patch It's failing because the documentation build (arch:all) expects the main build (arch:any) to have been done first. Fix: diff -Nru libgpuarray-0.6.9/debian/rules libgpuarray-0.6.9/debian/rules --- libgpuarray-0.6.9/debian/rules 2017-07-26 21:25:20.0 +0100 +++

Bug#870128: libgpuarray: broken autopkgtests

2018-06-21 Thread Rebecca N. Palmer
Control: tags -1 fixed-upstream Upstream have a different patch for skipping CUDA-only tests on OpenCL (which I haven't tried myself): https://github.com/Theano/libgpuarray/commit/f036aef3a425560161de362f390d238f4e7c1721 There are also two real issues in this set of test failures/errors: - e

Bug#901487: libgpuarray 0.7.0

2018-06-21 Thread Rebecca N. Palmer
Control: tags -1 patch The only required packaging change to build the new version is to update the soname (see below). I only tested the Python 3 version on pocl, which passes (i.e. #870128 is gone as expected). Other things you might want to look at while you're making an upload: - libgpua

Bug#885423: [Pkg-opencl-devel] Bug#885423: Beignet: self-test failed: (3, 7, 5) + (5, 7, 3) returned (6, 7, 5)

2018-01-01 Thread Rebecca N. Palmer
To identify more precisely what isn't working, please install the beignet-dev package and run OCL_IGNORE_SELF_TEST=1 /usr/lib/x86_64-linux-gnu/beignet/utest_run Is this a new problem (i.e. have you used it without this error before), and if so, when did it start? darktable doesn't actually us

Bug#885423: [Pkg-opencl-devel] Bug#885423: Beignet: self-test failed: (3, 7, 5) + (5, 7, 3) returned (6, 7, 5)

2018-01-01 Thread Rebecca N. Palmer
The lack of failures is strange - does the original bug still exist? (beignet hasn't changed, but it might be elsewhere.) Does /usr/lib/x86_64-linux-gnu/beignet/utest_run without OCL_IGNORE_SELF_TEST also report "self-test failed"?

Bug#885423: [Pkg-opencl-devel] Bug#885423: Beignet: self-test failed: (3, 7, 5) + (5, 7, 3) returned (6, 7, 5)

2018-01-01 Thread Rebecca N. Palmer
On 01/01/18 22:38, Achim Schaefer wrote: Here I see something different: displacement_map_element()    [SUCCESS] compiler_mandelbrot()utest_run: /build/beignet-ydQSQk/beignet-1.3.2/utests/utest_helper.cpp:713: void cl_write_bmp(const int*, int, int, const char*): Assertion `fp' failed.     Inter

Bug#885423: [Pkg-opencl-devel] Bug#885423: Bug#885423: Beignet: self-test failed: (3, 7, 5) + (5, 7, 3) returned (6, 7, 5)

2018-01-03 Thread Rebecca N. Palmer
I have now reproduced this bug, but have not yet had time to investigate further. On 02/01/18 23:16, Achim Schaefer wrote: now boinc does not find the GPU anymore. This was after a restart, I don't know when I started boinc the last time. This might be the same bug, but I don't know if/where

Bug#885423: [Pkg-opencl-devel] Bug#885423: Beignet: self-test failed: (3, 7, 5) + (5, 7, 3) returned (6, 7, 5)

2018-01-04 Thread Rebecca N. Palmer
Control: tags -1 patch Description: Fix self-test fail in Darktable Reverts upstream 81755054c4c19d821e58456a1a7d601806e60e92 Author: Rebecca N. Palmer Bug-Debian: https://bugs.debian.org/885423 Forwarded: todo diff --git b/backend/src/backend/gen_insn_selection_optimize.cpp a/backend/src

Bug#892577: Spelling and grammar errors in SC/DFSG/DMUP agreement page

2018-03-10 Thread Rebecca N. Palmer
Package: nm.debian.org Severity: minor The page requesting one's signed agreement to the SC/DFSG/DMUP contained the text below when I used it: 'convenince' is mis-spelled, and 'Policy...them' is grammatically incorrect (it should probably be 'Policies'). The latter would presumably need to b

Bug#892578: Self-contradictory documentation of whether DMs need 1 or 2 key signatures

2018-03-10 Thread Rebecca N. Palmer
Package: nm.debian.org Severity: minor - The documentation on the wiki ( https://wiki.debian.org/DebianMaintainer#step_1_:_Identification ) says 1 (but that more is recommended). - The form for registering oneself in the NM database says 2 are needed (but doesn't enforce this, presumably becau

Bug#892577: Spelling and grammar errors in SC/DFSG/DMUP agreement page

2018-03-11 Thread Rebecca N. Palmer
On 11/03/18 16:06, Mattia Rizzolo wrote: the DMUP is one policy (you have read it, right??) It's one document, but its title uses the word 'Policies'. 'Policy..it' would also be grammatically correct.

Bug#893360: python3-tornado 5.0.0 breaks python3-zmq

2018-03-18 Thread Rebecca N. Palmer
This is because tornado 5.0 deliberately removed ioloop.IOLoop.initialized() because "It is no longer possible to provide this method with reasonable semantics": https://github.com/tornadoweb/tornado/commit/426b3812b9dd21ae0bac19d4146c6952816c7bfe#diff-1d4144f0ef561b7c18c7fe438816e1f5 This bug

Bug#893656: transition: theano 0.9 -> 1.0

2018-03-20 Thread Rebecca N. Palmer
Source: theano Severity: wishlist (Posting here rather than on debian-release as the formal transition process is rarely used, and its tools mostly useless, for non-compiled cases.) Theano 1.0 (currently in Salsa) contains some API-breaking changes: http://www.deeplearning.net/software/theano

Bug#893729: sympy FTBFS: python3-distutils is now a separate package

2018-03-21 Thread Rebecca N. Palmer
Source: sympy Severity: serious Control: tags -1 patch X-Debbugs-Cc: debian-pyt...@lists.debian.org python3-distutils has been moved out of python3.6 (as of 3.6.5~rc1-2), so if you need it, please build-depend on it. (Or python3-setuptools, given that this looks like it might prefer that.) (

Bug#893729: sympy FTBFS: python3-distutils is now a separate package

2018-03-21 Thread Rebecca N. Palmer
o use setuptools instead of distutils as recommended by the PyPA? Le mer. 21 mars 2018 à 20:45, Rebecca N. Palmer a écrit : Source: sympy Severity: serious Control: tags -1 patch X-Debbugs-Cc: debian-pyt...@lists.debian.org python3-distutils has been moved out of python3.6 (as of 3.6.5~rc1-2), so i

Bug#804552: Pandas documentation package is empty

2019-02-25 Thread Rebecca N. Palmer
The build log ( https://launchpadlibrarian.net/412630196/buildlog_ubuntu-disco-amd64.pandas_0.23.3-1fakesync1ubuntu3_BUILDING.txt.gz ) suggests this is due to passing a PYTHONPATH to the just-built python-pandas, but not -lib or python3-, causing a failed import. However, the obvious way to fi

Bug#804552: Pandas documentation package is empty

2019-02-26 Thread Rebecca N. Palmer
Also changing the ipython dependency to ipython3 fixes this. The documentation so built does contain some error messages in its example output (the examples are run during build), including attempts to download data (not allowed in Debian package builds), and attempts to use modules we don't b

Bug#923707: statsmodels FTBFS: array |= frame now returns frame

2019-03-03 Thread Rebecca N. Palmer
Source: pandas Version: 0.23+dfsg-2 Severity: serious Control: affects -1 src:statsmodels Control: tags -1 patch The fix for #918206 (setting __array_priority__ to make np.array @ DataFrame work) is technically API breaking: in-place operators arr = np.array(...) df = pd.DataFrame(...) arr +=

Bug#923708: pandas: np.array @ Series acts the wrong way round

2019-03-04 Thread Rebecca N. Palmer
Source: pandas Version: 0.23.3+dfsg-2 Severity: important Control: tags -1 fixed-upstream patch np.array @ Series actually calculates Series @ np.array, which is an error for nonsquare matrices and a *wrong answer* for square matrices. Fixed upstream by https://github.com/pandas-dev/pandas/pu

Bug#924840: highwayhash: FTBFS - symbol missing

2019-04-07 Thread Rebecca N. Palmer
I do see this bug in both sid and mostly-buster (I haven't tried creating a new buster chroot). If only some people see this bug, but who sees it is reproducible, that could be a sign of another problem such as the package doing build-time hardware detection. (https://sources.debian.org/src/hi

Bug#993107: theano: autopkgtest depends on libclblas-dev which is not in testing *and* has skip-not-installable

2021-08-29 Thread Rebecca N. Palmer
Control: tags -1 pending This is the same underlying problem as #992673, but for this one it looks like switching to clblast is enough to pass the tests we actually run. (Which isn't all of them because the GPU part of theano has never fully worked under OpenCL, but we already warn the user a

Bug#992673: libgpuarray: *gemv broken on libclblast

2021-08-30 Thread Rebecca N. Palmer
Control: retitle -1 libgpuarray: *gemv broken on libclblast For now I have disabled *gemv when used with libclblast, to make this bug an explicit error rather than a silently wrong answer. These functions are still available with clblas, but that has enough other issues (https://bugs.debian.o

Bug#992673: libgpuarray: *gemv broken on libclblast

2021-08-30 Thread Rebecca N. Palmer
There's also this test failure on arm64 (which is at least a crash not a wrong answer), again with clblast not clblas. It probably isn't a new problem either: the tests were previously run with clblas only. (The "regression" on ppc64el is that the test has never been installable there and we'

Bug#988142: pandas FTBFS in buster: test failures

2021-05-09 Thread Rebecca N. Palmer
This is _probably_ the same issue that 0.23.3+dfsg-3 has had since it was new: some tests run in all installed locales, and on reproducible-builds (but not buildds without a locales-all dependency) this includes a few with no text encoding. The underlying issue is in Python stdlib, and is an e

Bug#982947: clinfo reports fatal error

2021-02-17 Thread Rebecca N. Palmer
On 17/02/2021 10:00, Andreas Beckmann wrote: Note to self: `reportbug clinfo` should report all installed ICDs Feel free to borrow beignet-opencl-icd.bug-script

Bug#983328: pandas: sparse test_from_coo fails with scipy 1.6.1

2021-02-22 Thread Rebecca N. Palmer
On 22/02/2021 12:44, Drew Parsons wrote: v1.2.2 is the latest pandas release Has this error in test_from_coo been fixed in that latest release? Not obviously, but I haven't tried actually running that. Is scipy 1.6.1 intended for bullseye?

Bug#983328: scipy 1.6.1 breaks sparse (COO) matrix construction

2021-03-02 Thread Rebecca N. Palmer
What, if any, action are you proposing before bullseye? Or is this a request for an up-to-date pandas in experimental? That workaround just disables the affected test, i.e. it will probably fix the FTBFS but do nothing to the underlying problem. As noted in #983404, a real scipy fix also exi

Bug#983328: scipy 1.6.1 breaks sparse (COO) matrix construction

2021-03-02 Thread Rebecca N. Palmer
Fine by me, thanks.

Bug#992681: scipy breaks statsmodels autopkgtest: place: mask and data must be the same size

2021-08-22 Thread Rebecca N. Palmer
Control: reassign -1 src:statsmodels Control: tags -1 fixed-upstream Appears to be these (but not yet tested in Debian): https://github.com/statsmodels/statsmodels/issues/7371 https://github.com/statsmodels/statsmodels/issues/7453

Bug#992673: libgpuarray: autopkgtest depends on libclblas-dev which is not in testing *and* has skip-not-installable

2021-08-22 Thread Rebecca N. Palmer
clblas has been replaced by clblast, so I tried switching to that, but doing so makes a varying number of cases of test_gemv fail, e.g. == FAIL: pygpu.tests.test_blas.test_gemv((128, 50), 'float32', 'c', True, False, 2, True, F

Bug#963041: python3-pulp: maybe API break Re: New upstream

2020-09-13 Thread Rebecca N. Palmer
This _might_ be an API break. The reverse dependencies are snakemake and congress. snakemake recently started declaring a <=1.6.8 version restriction: https://github.com/snakemake/snakemake/commits/a7ac40c96d6e2af47102563d0478a2220e2a2ab7 However, their reason seems to be that pulp 2.x doesn't

Bug#970555: libncurses upgrade fails in cowbuilder chroots

2020-09-27 Thread Rebecca N. Palmer
Jessica Clarke wrote: It seems to me like dpkg has done a very dodgy sequence of events that have resulted in the system being broken for a short period and, whilst most don't notice, cowdancer does. Why is this not a dpkg (or apt) bug? It should be possible to do that sequence in a way that pres

Bug#932411: lintian: duplicate-files could suggest how to fix it

2019-07-18 Thread Rebecca N. Palmer
Package: lintian Version: 2.16.0 Severity: wishlist Control: tags -1 patch Based on https://wiki.debian.org/dedup.debian.net#Tips_for_reducing_duplication_in_packages How: jdupes is simpler, but rdfind+symlinks is currently more popular (8 vs 42 according to codesearch). This may be because

Bug#932629: piuparts.debian.org: stable2sid broken by buster release

2019-07-21 Thread Rebecca N. Palmer
Package: piuparts.debian.org Since the buster release, stable2sid seems to be failing everything with E: Repository 'http://mirror-ubc.debian.org/debian buster InRelease' changed its 'Suite' value from 'testing' to 'stable' e.g. https://piuparts.debian.org/stable2sid/fail/python3-statsmodels

Bug#932664: gobby.debian.org: mismatched character encoding

2019-07-21 Thread Rebecca N. Palmer
Package: gobby Nonsense characters instead of (probably) bullet points in https://gobby.debian.org/export/debconf19/bof/Python

Bug#816448: debcheck: Does not support build-profiles

2020-05-21 Thread Rebecca N. Palmer
Control: tags -1 patch If you'd prefer to just fix this without (for now) the broader rewrite, https://salsa.debian.org/qa/qa/-/merge_requests/28 claims to do so; I haven't tried it but it looks plausible. Weirdly, this bug doesn't seem to affect everything with build profiles: of my package

Bug#844750: fixed? Re: should link to tracker.d.o instead of packages.qa.d.o

2020-05-21 Thread Rebecca N. Palmer
This appears to be fixed, probably by https://salsa.debian.org/qa/qa/-/commit/56fbe1b36e3a8ec9064cb9ce6cbcbfd5448feb61 (Fixed on qa.debian.org/dose/debcheck/...; qa.debian.org/debcheck.php?... doesn't have a tracker link at all. Should it?)

Bug#708060: debcheck: :$arch and :native always appear broken

2020-05-21 Thread Rebecca N. Palmer
Control: retitle -1 debcheck: :$arch and :native always appear broken Since https://salsa.debian.org/qa/qa/-/commit/526d2319174cb15111bb2d6c702f8e23ee7bd0d7 , arch-specific Depends don't crash debcheck, but do search for a package named literally $package:$arch not just $package. As this does

Bug#667593: exists elsewhere Re: debcheck: check for obsolete transitional packages

2020-05-21 Thread Rebecca N. Palmer
debcheck processes a single release per run, so in its current form can't check this, or anything that requires comparing multiple releases. (The oldlibs check looks for explicit Section: oldlibs labels.) There is a separate tool on jenkins that does check this: https://salsa.debian.org/qa/jen

Bug#959762: UDD/dmd: fails to load when debci data is missing

2020-05-25 Thread Rebecca N. Palmer
Control: retitle -1 UDD/dmd: fails to load when debci data is missing The problem isn't the number of packages, but some specific packages that can't be displayed even when they are the only package requested: https://udd.debian.org/dmd/?email1=&email2=&email3=&packages=node-file-entry-cache&ig

Bug#959762: UDD/dmd: fails to load when debci data is missing

2020-05-25 Thread Rebecca N. Palmer
Johannes Schauer wrote: In particular, in the "CI" column, look for those rows where the first line shows exactly "✔-" -- those packages have to be excluded. Failures are fine and even both missing is fine but a checkmark followed by a minus triggers that bug. Neutral/missing ("⛔-") is also bad

Bug#903827: probably not fixed Re: Bug#903827

2020-05-27 Thread Rebecca N. Palmer
Control: reassign -1 src:llvm-toolchain-10 Control: reopen -1 Probably still exists, though pocl no longer appears affected: $ strings /usr/lib/x86_64-linux-gnu/libMesaOpenCL.so.1 | grep "/clang/" /usr/lib/llvm-10/lib/clang/10.0.0/include $ strings /usr/lib/x86_64-linux-gnu/libpocl.so.2.5.0 | gr

Bug#959558: this fix breaks things

2020-05-30 Thread Rebecca N. Palmer
This fix causes Sphinx to fail if documenting an object whose __getattr__ fails, e.g. flask.request. This causes at least snakemake to FTBFS. Details and fix: https://github.com/sphinx-doc/sphinx/pull/7520 A workaround in failing packages is to add autodoc_default_options = {'exclude-members'

Bug#979621: pandas: autopkgtest regression in testing: No tables found

2021-01-11 Thread Rebecca N. Palmer
Control: tags -1 fixed-upstream pending The trigger was a change in the outside world, not Debian testing: the tests (of HTML table parsing) were trying to access a web page that no longer exists. Fixed in Salsa.

Bug#963041: python3-pulp 2.x

2020-10-06 Thread Rebecca N. Palmer
Control: affects -1 snakemake Upstream snakemake have now moved to pulp 2.x - but went straight from 1.x only to 2.x only, i.e. they need to be upgraded together.

Bug#924036: partly fixed

2020-10-06 Thread Rebecca N. Palmer
Most of these tests no longer fail in 0.11.1-5 (current Ubuntu) and 0.12.0-2 (current Debian), but 3 still do: two variants of varmax test_bse_oim, and test_pickle_fit_sarimax.

Bug#972033: pandas ftbfs with python3.9 as supported python version

2020-10-11 Thread Rebecca N. Palmer
Control: merge -1 972015 Control: found -1 1.0.5+dfsg-3 Control: forwarded -1 https://github.com/pandas-dev/pandas/issues/36296 Control: tags -1 fixed-upstream pandas 1.1.3 may fix this, but moving to 1.1.x triggers #969648.

Bug#972033: pandas ftbfs with python3.9 as supported python version

2020-10-11 Thread Rebecca N. Palmer
There's a 1.1.3 package in Salsa, but it hasn't been tested. (With python3-all-dev from experimental, it fails because numpy doesn't have a 3.9 build yet.)

Bug#969648: python3.9 Re: dask, pandas 1.1

2020-10-11 Thread Rebecca N. Palmer
Control: block 972033 by 969650 This is now the only bug blocking pandas 1.1. Is there something wrong with the above fix, or have you just not had time to try it? Upgrading dask to a newer upstream version is also an option, but I haven't checked if it would break anything else. Python 3.

Bug#959136: close this bug?

2020-10-13 Thread Rebecca N. Palmer
The linked upstream report says this went away in numpy 1.18.4, and the tests in question now pass on debci.

Bug#969648: python3.9, dask, pandas 1.1

2020-10-14 Thread Rebecca N. Palmer
Control: severity 969648 serious Control: tags 969650 pending Control: tags 972033 pending Python 3.9 related breakage has been declared RC, so if nobody objects, I intend to upload pandas 1.1 to unstable (possibly tonight, but it probably won't build before numpy and matplotlib are binNMUd fo

Bug#972033: Bug#969650: Bug#972033: python3.9, dask, pandas 1.1

2020-10-16 Thread Rebecca N. Palmer
Control: tags -1 - pending The package currently in Salsa doesn't work. test_statsmodels is probably a circular dependency that should be ignored for now; TestHDFStore is under investigation. === FAILURES === T

Bug#964791: [Pkg-opencl-devel] Bug#964791: Bug#964791: libclc-amdgcn: OpenCL fails to start

2020-10-16 Thread Rebecca N. Palmer
The error message has gone for me as well, but I don't have the hardware to tell whether mesa-opencl-icd actually works. Have you checked this? I agree that this is probably the same bug as #964973, which is marked as fixed.

Bug#972015: Bug#972033: python3.9 pandas

2020-10-17 Thread Rebecca N. Palmer
This bug is not specific to DateTimeIndexes, and the immediate cause is the index being passed to numpy as a pandas.core.computation.pytables.Constant instead of an int: $ python3.9 Python 3.9.0+ (default, Oct 16 2020, 17:57:59) [GCC 10.2.0] on linux Type "help", "copyright", "credits" or "lice

Bug#972015: Bug#972033: python3.9 pandas

2020-10-17 Thread Rebecca N. Palmer
Control: tags -1 patch The underlying cause (and reason this is 3.9-specific) appears to be the mostly-removal of ast.Index and its replacement by a bare value. This appears to fix it, though I'm not yet sure if it's a good idea: --- a/pandas/core/computation/pytables.py +++ b/pandas/core/com

Bug#972015: Bug#972033: python3.9 pandas

2020-10-18 Thread Rebecca N. Palmer
Control: tags -1 pending Control: forwarded -1 https://github.com/pandas-dev/pandas/issues/37217 This appears to fix it, though I'm not yet sure if it's a good idea I was trying to find upstream's fix and use that instead, but it now looks like they don't have one, and probably didn't know th

Bug#972469: joblib: TerminatedWorkerError, AttributeError: '_SafeQueue' object has no attribute '_notempty' with Python 3.9

2020-10-18 Thread Rebecca N. Palmer
Package: python3-joblib Tags: fixed-upstream Control: affects -1 scikit-learn statsmodels Control: block 966426 by -1 Severity: serious Justification: causes other packages to FTBFS Our current version of joblib is incompatible with Python 3.9, which was recently added to the supported versions

Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
The upstream patch doesn't even apply as-is; this version does, but I don't have time right now to actually test it. There's also a circular dependency problem, as dask indirectly build-depends on itself and my new pandas makes it uninstallable. Description: pandas 1.1 compatibility Origin:

Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
ertionError diff -Nru dask-2.11.0+dfsg/debian/changelog dask-2.11.0+dfsg/debian/changelog --- dask-2.11.0+dfsg/debian/changelog 2020-02-26 21:01:52.0 + +++ dask-2.11.0+dfsg/debian/changelog 2020-10-19 08:38:20.0 +0100 @@ -1,3 +1,10 @@ +dask (2.11.0+dfsg-1.1) UNRELEASED; urgency=me

Bug#972516: dask: fsspec API changes / new aiohttp dependency

2020-10-19 Thread Rebecca N. Palmer
Package: python3-dask Version: 2.11.0+dfsg-1 Some of fsspec's functionality now requires python3-aiohttp, including parts used in dask autopkgtests: https://ci.debian.net/data/autopkgtest/testing/amd64/d/dask/7549002/log.gz Some of these work if I add a test-dependency, but 2 continue to fail

Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
Or maybe not an actual regression...it's a ~5e-7 difference and one of the things the patch does (at around dask/dataframe/tests/test_rolling.py:270) is _tighten_ the tolerance on that test. I have filed a separate bug (#972516) for the fsspec issues.

Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
On 19/10/2020 20:07, Stefano Rivera wrote: Hi Rebecca (2020.10.19_11:51:33_-0700) Or maybe not an actual regression...it's a ~5e-7 difference and one of the things the patch does (at around dask/dataframe/tests/test_rolling.py:270) is _tighten_ the tolerance on that test. Hrm, I didn't see th

Bug#969648: BD-Uninstallable Re: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
A bot wrote: Dependency installability problem for dask on all: dask build-depends on: - python3-pandas:amd64 (>= 0.19.0) dask build-depends on: - python3-distributed:amd64 python3-distributed depends on: - python3-dask:amd64 (>= 2.9.0) python3-pandas conflicts with: - python3-dask:amd64 (< 2.11

Bug#956806: Fwd: DMARC fail on non-spam - is this a lists.d.o bug?

2020-04-20 Thread Rebecca N. Palmer
I don't think this is a moderation-specific problem, as I've had it on -backports: see below, "From cmake information". Forwarded Message Subject: DMARC fail on non-spam - is this a lists.d.o bug? Date: Sat, 22 Feb 2020 17:36:58 +0000 From: Rebecca N.

Bug#958531: pandas: broken by NaT/isnan changes in numpy 1.18

2020-04-23 Thread Rebecca N. Palmer
Package: python3-pandas Version: 0.25.3+dfsg-9 Severity: serious Tags: fixed-upstream patch numpy 1.18 includes two behaviour changes that affect pandas, causing a CI fail / presumed FTBFS. Both are fixed in pandas 1.0 (in experimental, but moving that to unstable causes other issues, see #95

Bug#956882: statsmodels: FTBFS on armel

2020-04-23 Thread Rebecca N. Palmer
Control: tags -1 patch The failed tests are expecting an 0/0 warning from numpy, which it produces on amd64 but not armel: amd64$ python3 Python 3.8.2 (default, Apr 1 2020, 15:52:55) [GCC 9.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import numpy a

Bug#958666: known bad addresses Re: lintian

2020-04-24 Thread Rebecca N. Palmer
gregor herrmann wrote: This link and the whole check would be helpful only for not-migrated alioth lists which don't work anymore but I guess lintian has no chance to make this discrimination. Lintian already has a list of individual known-bad addresses (data/fields/bounce-addresses, tags *-ca

Bug#958700: pocl: nested(?) dlopen fails

2020-04-26 Thread Rebecca N. Palmer
Control: retitle -1 pocl: nested(?) dlopen fails Control: reassign -1 libpocl2 1.5-2 Control: affects -1 src:libgpuarray python3-pyopencl ocl-icd-libopencl1 dlopen()s ICDs (at https://sources.debian.org/src/ocl-icd/2.2.12-4/ocl_icd_loader.c/#L184). With pocl 1.5, this dlopen() fails in some co

Bug#926416: licensing Re: ITP: conda

2020-04-29 Thread Rebecca N. Palmer
Note that these are distinct: - conda, the package manager itself; BSD-3 licensed - Anaconda Individual Edition, a bundle of conda + some commonly-used packages; non-DFSG-free as it includes intel-mkl and cudnn (https://docs.anaconda.com/anaconda/eula/) - Anaconda repository, the server conda us

Bug#826095: python-pandas: please provide backport of pandas

2020-04-29 Thread Rebecca N. Palmer
A potential problem is that upgrading pandas breaks some of its reverse dependencies: whether this is a blocker for backports is being discussed at https://lists.debian.org/debian-backports/2020/04/threads.html#00062 Packages thought to break are cnvkit influxdb-python snakemake statsmodels tqd

Bug#959165: udd vcswatch: 429 "Retry later" or "could not read Username" from Salsa

2020-04-30 Thread Rebecca N. Palmer
Package: qa.debian.org User: qa.debian@packages.debian.org Usertags: udd Some packages' vcswatch pages have the error fatal: could not read Username for 'https://salsa.debian.org': No such device or address (e.g. apertium-bel, python-asteval) or remote: Retry later fatal: unable to acces

Bug#959165: udd vcswatch: 429 "Retry later" or "could not read Username" from Salsa

2020-04-30 Thread Rebecca N. Palmer
Control: clone -1 Control: reassign -1 qa.debian.org Control: retitle -2 apertium-bel: stray cgit in Vcs-Git spyder, python-asteval and beignet don't have a cgit in Vcs-Git. Hence, while I agree it's a bug that apertium-bel does, this alone doesn't explain either of the above messages.

Bug#959167: stray cgit in Vcs-Git

2020-04-30 Thread Rebecca N. Palmer
The packages below have cgit in Vcs-Git and a vcswatch error. Maybe Lintian should check for this (vcs-field-bitrotted?). However, libvmime also has cgit in the address, but its vcswatch reports success. apertium-bel arduino-mighty-1284p astrodendro casacore-data-igrf casacore-data-lines casa

Bug#888733: RM: hyantesite

2020-12-18 Thread Rebecca N. Palmer
Control: retitle -1 RM: hyantesite -- RoM; behaviour does not match documentation, upstream/uploader inactive The patches above and regenerating the test references would probably fix the FTBFS, but that still leaves the code for amortized_disk and pareto not matching the documentation. It wou

Bug#977743: packages.debian.org: "list of files" fails on sid/testing arch:all packages - not processing Contents-all.gz ?

2020-12-19 Thread Rebecca N. Palmer
Package: www.debian.org On the packages.d.o pages of arch:all packages from sid, bullseye or experimental, the "list of files" link gives the error message "No such package in this suite on this architecture." This does not affect arch:any packages, or packages from stable. e.g. fails - http

Bug#975931: [Pkg-opencl-devel] Bug#975931: pocl breaks libgpuarray autopkgtest on armhf: segmentation fault

2020-11-27 Thread Rebecca N. Palmer
Existing discussion (in what was originally a different bug): https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=974797#28 This bug might also be in llvm or clblas.

Bug#976620: xlrd: if defusedxml installed, AttributeError: 'ElementTree' object has no attribute 'getiterator'

2020-12-05 Thread Rebecca N. Palmer
Package: python3-xlrd Version: 1.2.0-1 Tags: patch xlrd 1.2.0 started using defusedxml if available. As defusedxml.cElementTree does not have a top-level ElementTree attribute, Element_has_iter gets set to False (https://sources.debian.org/src/python-xlrd/1.2.0-1/xlrd/xlsx.py/#L59). However,

Bug#976573: pandas: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.8 3.9" returned exit code 13

2020-12-06 Thread Rebecca N. Palmer
On 05/12/20 at 13:47 +0100, Lucas Nussbaum wrote: Tags: bullseye sid ftbfs Usertags: ftbfs-20201205 ftbfs-bullseye Does this imply that it was also tested and failed in bullseye? The log is marked unstable, and the test failures in it are #976620, which is probably unstable-only.

Bug#976620: xlrd: if defusedxml installed, AttributeError: 'ElementTree' object has no attribute 'getiterator'

2020-12-06 Thread Rebecca N. Palmer
Control: severity -1 serious Control: affects -1 pandas This breaks the default form of pandas.read_excel(). A workaround for this is to use pandas.read_excel(engine='openpyxl'), and pandas upstream have made this the default: https://github.com/pandas-dev/pandas/pull/35029/files I intend to

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