Bug#734037: Annual ping for Johannes Ring

2014-01-03 Thread Johannes Ring
Package: debian-maintainers Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello, This is my annual ping. Thanks for your attention, Johannes -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.15 (GNU/Linux) iQIcBAEBAgAGBQJSxn6JAAoJEIsTRN6fgH8U8SkP/2g1/f+5DcBjHi2CU1MPM8c6 FotCW

Bug#739697: src:dolfin: FTBFS on armhf and mips: virtual memory exhausted: Cannot allocate memory

2014-02-26 Thread Johannes Ring
On Mon, Feb 24, 2014 at 12:35 AM, peter green wrote: > peter green wrote: >> >> I've been doing some tests on this interestingly it failed for me much >> earlier than on the buildd, maybe different systems give slightly different >> ammounts of usable address space or something. Anyway reducing op

Bug#697590: Annual ping for Johannes Ring

2013-01-07 Thread Johannes Ring
Package: debian-maintainers Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello, This is my annual ping. Thanks for your attention, Johannes -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.12 (GNU/Linux) iQIcBAEBAgAGBQJQ6pc0AAoJEIsTRN6fgH8UOPkQAI59V/ciku+VcdMzestMAE8p UhHp7

Bug#679762: Please give back dolfin (hurd-i386 and i386)

2012-08-23 Thread Johannes Ring
Ping? Johannes On Mon, Aug 6, 2012 at 10:28 AM, Johannes Ring wrote: > Hi, > > dolfin 1.0.0-7 failed to build on hurd-i386 and i386 due to a bug in > gcc-4.7. This bug was fixed in gcc-4.7 4.7.1-6, so please rebuild > dolfin on those architectures: > > gb dolfin_1.0

Bug#675207: [Dolfin] Please binNMU python-ufc against latest swig

2012-06-21 Thread Johannes Ring
On Sat, Jun 16, 2012 at 10:40 AM, Julien Cristau wrote: > On Fri, Jun 15, 2012 at 10:32:56 +0200, Johannes Ring wrote: >> On Thu, Jun 14, 2012 at 4:46 PM, Julien Cristau >> wrote: >> > If dolfin only works with the version of swig it was built against, that >>

Bug#679762: dolfin: FTBFS: Armadillo could not be found. Be sure to set ARMADILLO_DIR. (missing: ARMADILLO_TEST_RUNS)

2012-07-31 Thread Johannes Ring
On Sun, Jul 1, 2012 at 1:09 PM, Christoph Egger wrote: > Your package failed to build on the buildds: > > -- Performing Test ARMADILLO_BLAS_TEST_RUNS - Failed > -- Performing Test ARMADILLO_GFORTRAN_TEST_RUNS > -- Performing Test ARMADILLO_GFORTRAN_TEST_RUNS - Failed > CMake Error at > /usr/share

Bug#679762: dolfin: FTBFS: Armadillo could not be found. Be sure to set ARMADILLO_DIR. (missing: ARMADILLO_TEST_RUNS)

2012-08-02 Thread Johannes Ring
On Thu, Aug 2, 2012 at 1:30 AM, Kumar Appaiah wrote: > #680931 has been fixed by the latest gcc download, so I don't believe > that the workaround upload for Armadillo is necessary. Thanks Kumar. The latest gcc-4.7 package (version 4.7.1-6) fixed the problem. I guess a binNMU for DOLFIN is needed

Bug#679762: Please give back dolfin (hurd-i386 and i386)

2012-08-06 Thread Johannes Ring
Hi, dolfin 1.0.0-7 failed to build on hurd-i386 and i386 due to a bug in gcc-4.7. This bug was fixed in gcc-4.7 4.7.1-6, so please rebuild dolfin on those architectures: gb dolfin_1.0.0-7 . hurd-i386 i386 This would clear the FTBFS bug #679762 (CCed). Thanks, Johannes -- To UNSUBSCRIBE, e

Bug#571780: [Pkg-scicomp-devel] Bug#571780: python-pydolfin0: Cannot import dolfin from python.

2010-02-28 Thread Johannes Ring
Hi, Thanks for your report. On Sun, Feb 28, 2010 at 12:25 AM, Guillaume Yziquel wrote: > Package: python-pydolfin0 > Version: 0.9.7-1 > Severity: grave > Justification: renders package unusable > > > Recently upgraded to the newest packaging of dolfin. I cannot import dolfin > from python: > >

Bug#629564: fenics: not installable in sid

2011-06-08 Thread Johannes Ring
Hi Ralf, Thanks for your report. On Tue, Jun 7, 2011 at 8:40 PM, Ralf Treinen wrote: > fenics is not installable in sid on any architecture. On amd64 (I didn't > check the other architectures) this is the case since May 19. Explanation: > > fenics (= 11.5-1) depends on syfi-doc (= 0.6.2.dfsg-1)

Bug#628243: syfi: FTBFS: syfi/swig/SyFi_wrap.cc:3109:50: error: 'const class GiNaC::basic' has no member named 'tinfo'

2011-08-16 Thread Johannes Ring
Hi Luca, On Sun, Aug 14, 2011 at 10:33 PM, Luca Falavigna wrote: > I uploaded swig2.0 2.0.4-2.1 which provides the fix in order to let syfi > to build again. Could you please look whether it's OK now? Yes, the problem with swig2.0 is resolved with the 2.0.4-2.1 upload. Thank you. > Having syfi

Bug#631589: python-dolfin: python -c "import dolfin" fails with MPI error

2011-08-16 Thread Johannes Ring
Hi Luk, thanks for the report and sorry for the late reply. On Sat, Jun 25, 2011 at 7:57 AM, LUK ShunTim wrote: > $ python -c "import dolfin" > *** The MPI_comm_size() function was called before MPI_INIT was invoked. > *** This is disallowed by the MPI standard. > *** Your MPI job will now abort

Bug#631589: python-dolfin: python -c "import dolfin" fails with MPI error

2011-08-16 Thread Johannes Ring
On Tue, Aug 16, 2011 at 1:00 PM, LUK ShunTim wrote: > Yes, it does. Good. I will add "import PyTrilinos" at the top of dolfin/__init__.py to make sure that it will be imported before dolfin. > Now an OT bug. :-) > > I added the "import PyTrilinos" to demo_poisson.py and got a ufl.Form error. > >

Bug#636869: vmtk: FTBFS on all plateforms: No rule to make target `/usr/lib/libpng.so'

2011-09-05 Thread Johannes Ring
Hi! This is no longer a problem with the latest CMake and VTK packages in Debian. What is the correct way to close this bug? Thanks, Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#641304: ITP: ptex2tex -- easy generation of (possibly complex) LaTeX environments

2011-09-12 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org Package name: ptex2tex Version: 0.4 Upstream authors: Hans Petter Langtangen and Ilmar Wilbers URL: http://ptex2tex.googlecode.com/ License: BSD-3-clause Description: easy generation of (possibly complex) LaTeX environmen

Bug#636869: vmtk: FTBFS on all plateforms: No rule to make target `/usr/lib/libpng.so'

2011-08-08 Thread Johannes Ring
Hi Sylvestre, Thanks for your report. On Sat, Aug 6, 2011 at 5:39 PM, Sylvestre Ledru wrote: > Your patckage FTNFS on all plateforms: :) [snip] > make[3]: *** No rule to make target `/usr/lib/libpng.so', needed by > `bin/libvtkvmtkComputationalGeometry.so.0.9.0'.  Stop. > make[3]: Leaving di

Bug#643600: libsyfi1.0: Please update the description

2011-09-28 Thread Johannes Ring
Hi Sylvestre, Thanks for your suggestion. This is fixed in SVN now. Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#642712: dolfin: FTBFS: g++: error: =format-security: No such file or directory

2011-09-30 Thread Johannes Ring
Mònica, Thanks for the report. This issue has been fixed upstream: http://bazaar.launchpad.net/~dolfin-core/dolfin/main/revision/6306 Upstream plans to do a new release soon so I will hold on a few more days before I patch and upload. Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-r

Bug#722234: fenics: can't install fenics on unstable

2013-09-10 Thread Johannes Ring
On Mon, Sep 9, 2013 at 12:08 PM, Michael Strobel wrote: > i tried to install fenics on unstable. It failed due to a conflict. This is not a bug in in the fenics package but rather a problem as a result of the ongoing transition to openmpi 1.6: http://release.debian.org/transitions/html/openmpi1.

Bug#529807: [Pkg-scicomp-devel] Bug#529807: libtrilinos: Missing library links

2012-02-21 Thread Johannes Ring
Hi Adam, Trilinos 10.8.5 has been packaged in svn: svn://svn.debian.org/svn/debian-science/packages/trilinos/trunk Please check if this bug is still present there. Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Cont

Bug#654313: Annual ping for Johannes Ring

2012-01-02 Thread Johannes Ring
Package: debian-maintainers Severity: normal Hello, This is my annual ping. Thanks for your attention, Johannes signature.asc Description: OpenPGP digital signature

Bug#651502: ImportError: No module named Scientific_numerics_package_id

2011-12-09 Thread Johannes Ring
Package: python-scientific Version: 2.8-3 When importing Scientific.Functions.Derivatives I get the following error: $ python -c "import Scientific.Functions.Derivatives" Traceback (most recent call last): File "", line 1, in File "/usr/lib/python2.7/dist-packages/Scientific/Functions/Deriva

Bug#651997: python-dolfin: unknown symbol: wrapper_dgesv_

2011-12-19 Thread Johannes Ring
Hi Andreas, Thank you for your report, but I couldn't reproduce your bug. On Tue, Dec 13, 2011 at 11:34 PM, Andreas Kloeckner wrote: > When I run any one of the simple fenics demos, I get this error message: > > ImportError: /usr/lib/libdolfin.so.1.0: undefined symbol: wrapper_dgesv_ This symbo

Bug#651997: python-dolfin: unknown symbol: wrapper_dgesv_

2011-12-19 Thread Johannes Ring
On Mon, Dec 19, 2011 at 10:37 AM, Andreas Kloeckner wrote: > Did, and it helped. Thanks very much! Good! > This being as it is, could you upload a new package with tightened > dependencies? The dependency on libarmadillo2 is added automatically by ${shlibs:Depends}. I guess I could add a versio

Bug#651997: python-dolfin: unknown symbol: wrapper_dgesv_

2011-12-19 Thread Johannes Ring
On Mon, Dec 19, 2011 at 3:50 PM, Andreas Kloeckner wrote: > Hmm, I feel like automatic shared library dependencies should have been > able to catch this, i.e. someone is supposed to have done something with > the soname at some point--I'm just not sure what... :) Yes, I agree. It is most likely a

Bug#651997: python-dolfin: unknown symbol: wrapper_dgesv_

2011-12-20 Thread Johannes Ring
[Adding Kumar (maintainer of Armadillo) in Cc] On Tue, Dec 20, 2011 at 10:16 AM, Julien Cristau wrote: > On Mon, Dec 19, 2011 at 12:46:46 +0100, Johannes Ring wrote: >> On Mon, Dec 19, 2011 at 10:37 AM, Andreas Kloeckner wrote: >> > This being as it is, could you upload

Bug#675207: python-dolfin: Problem with SWIG

2012-05-31 Thread Johannes Ring
On Wed, May 30, 2012 at 4:26 PM, Torquil Macdonald Sørensen wrote: > Traceback (most recent call last): >  File "vcp2D.py", line 20, in >    V = FunctionSpace(mesh, 'Lagrange', 1) >  File "/usr/lib/python2.7/dist-packages/dolfin/functions/functionspace.py", > line 353, in __init__ >    FunctionS

Bug#675303: [Python-modules-team] Bug#675303: python-scitools: Bug in BoxField.py

2012-05-31 Thread Johannes Ring
Hi Torquil, Thanks for your bug report. I'm both Debian maintainer and upstream for this package and we plan to do a new release soon, which should fix this issue. Best regards, Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Tr

Bug#672208: python-dolfin: Extension module cpp not found/built

2012-05-09 Thread Johannes Ring
Hi ST, Thanks for the report. On Wed, May 9, 2012 at 8:22 AM, LUK ShunTim wrote: > It seems that in the current (1.0.0-4+b2) version of python-dolfin, the > extension module cpp is somehow not built. Correct. The build log [1] tells us why: CMake Warning at dolfin/CMakeLists.txt:227 (messag

Bug#667411: Another patch

2012-05-14 Thread Johannes Ring
The same fix should also be applied to Code/Algorithms/itkCurvesLevelSetFunction.h. Johannes --- insighttoolkit-3.20.1.orig/Code/Algorithms/itkCurvesLevelSetFunction.h 2012-05-14 19:55:57.353934793 +0200 +++ insighttoolkit-3.20.1/Code/Algorithms/itkCurvesLevelSetFunction.h 2012-05-14 19:

Bug#672952: FTBFS: compile errors

2012-05-16 Thread Johannes Ring
[Cc'ing debian-python] Hi LaMont, Thanks for the report but I'm wondering why python3.2 is installed on this build machine? From looking at the build log [1], it seems that it has been pre-installed? Is that intentional? DOLFIN Build-Depends on python-all-dev (>= 2.6.6-3~) and FWICT only python2.

Bug#672952: FTBFS: compile errors

2012-05-21 Thread Johannes Ring
On Wed, May 16, 2012 at 5:02 PM, Scott Kitterman wrote: > On Wednesday, May 16, 2012 12:04:05 PM Johannes Ring wrote: >> [Cc'ing debian-python] > ... >> @debian-python: Since DOLFIN does not work with Python 3 (yet) maybe a >> Build-Conflicts should be added? And what

Bug#673768: error: 'PropagationSpeed' was not declared in this scope

2012-05-21 Thread Johannes Ring
Package: libinsighttoolkit3-dev Version: 3.20.1-8 vmtk depends on itk and when trying to build the latest vmtk release, the build ends with the following error: In file included from /usr/include/InsightToolkit/Algorithms/itkCurvesLevelSetImageFilter.h:21:0, from /tmp/buildd/vmtk

Bug#674014: python-dolfin: Doesn't find python-scientific

2012-05-23 Thread Johannes Ring
Hi Torquil, Thanks for the report. On Tue, May 22, 2012 at 4:02 PM, Torquil Macdonald Sørensen wrote: > However, python-scientific is installed, and "import Scientific" works fine > when > I run it myself in the python shell. Yes, but does it work if you do "import Scientific.Functions.Derivat

Bug#675207: [Dolfin] Please binNMU python-ufc against latest swig

2012-06-13 Thread Johannes Ring
On Wed, Jun 13, 2012 at 9:15 PM, Anders Logg wrote: > Does this break because we check the SWIG version in the JIT compiler, > or because it actually breaks (with some link error)? It is the version check that makes it break. This is the error message: OSError: PyDOLFIN was not compiled with t

Bug#675207: [Dolfin] Please binNMU python-ufc against latest swig

2012-06-14 Thread Johannes Ring
On Wed, Jun 13, 2012 at 10:38 PM, Anders Logg wrote: > Does it work if you remove those checks in > >    dolfin/site-packages/dolfin/compilemodules/compilemodule.py >    dolfin/site-packages/dolfin/compilemodules/jit.py > > ? Yes, it works fine, but I also had to remove the check in ufc_utils/bui

Bug#675207: [Dolfin] Please binNMU python-ufc against latest swig

2012-06-14 Thread Johannes Ring
On Thu, Jun 14, 2012 at 1:45 PM, Johan Hake wrote: > On 06/14/2012 09:46 AM, Johannes Ring wrote: >> On Wed, Jun 13, 2012 at 10:38 PM, Anders Logg  wrote: >>> Does it work if you remove those checks in >>> >>>    dolfin/site-packages/dolfin/compilemodules

Bug#675207: [Dolfin] Please binNMU python-ufc against latest swig

2012-06-15 Thread Johannes Ring
On Thu, Jun 14, 2012 at 4:46 PM, Julien Cristau wrote: > If dolfin only works with the version of swig it was built against, that > needs to be reflected in the package dependencies. Okay, but I'm unsure how to do that. Currently I have "Build-Depends: swig2.0" in the source package and "Depends:

Bug#667599: dolfin-dev: fails to upgrade from squeeze - apt does not find an upgrade path

2012-06-15 Thread Johannes Ring
On Sat, Apr 7, 2012 at 3:10 AM, David Kalnischkies wrote: > In bug #667599 we have a report from piuparts that APT is unable to > upgrade delfin-dev from squeeze to wheezy. > > The problem is that APT has to decide in this process if it wants to > have libhdf5-1.8 (= libhdf5-openmpi-1.8.4) or libh

Bug#675207: Please binNMU python-ufc against latest swig

2012-06-03 Thread Johannes Ring
On Mon, Jun 4, 2012 at 2:05 AM, Cyril Brulebois wrote: > Johannes Ring (31/05/2012): >> python-ufc needs to be rebuilt against the latest swig (2.0.7). Please >> binNMU it. >> >>   nmu python-ufc_2.0.5-2 . ALL . -m 'Rebuild against swig 2.0.7, see >>

Bug#675207: Please binNMU python-ufc against latest swig

2012-06-03 Thread Johannes Ring
On Mon, Jun 4, 2012 at 7:49 AM, Mathieu Malaterre wrote: > If I may, I believe this is due to: http://bugs.debian.org/674263 > Any binary build with swig 2.0.5 or 2.0.6 should be rebuild IMHO. I agree, considering the regressions in SWIG 2.0.5 and 2.0.6, however, the problem in #675207 is not rel

Bug#675207: Please binNMU python-ufc against latest swig

2012-06-05 Thread Johannes Ring
On Mon, Jun 4, 2012 at 7:30 PM, Julien Cristau wrote: > On Mon, Jun  4, 2012 at 08:43:54 +0200, Johannes Ring wrote: > >> On Mon, Jun 4, 2012 at 2:05 AM, Cyril Brulebois wrote: >> > Johannes Ring (31/05/2012): >> >> python-ufc needs to be rebuilt agains

Bug#676596: vmtk: builds against vtk 5.6, not 5.8

2012-06-07 Thread Johannes Ring
Thanks Jeremy. This has already been fixed in the svn repository and I am waiting for it to be uploaded to unstable. Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#780359: Options w.r.t. libcgal11 transition

2015-05-12 Thread Johannes Ring
On Mon, May 11, 2015 at 11:35 PM, Joachim Reichel wrote: > Hi, > > dolfin is now the only reverse dependency holding up the libcgal11 transition. > > What are the options? > (1) Fix dolfin without causing another transition > (2) Remove dolfin from testing > (3) Upload 1.5.0-1 from experimental to

Bug#780359: Options w.r.t. libcgal11 transition

2015-05-12 Thread Johannes Ring
On Tue, May 12, 2015 at 10:07 AM, Johannes Ring wrote: > On Mon, May 11, 2015 at 11:35 PM, Joachim Reichel > wrote: >> Hi, >> >> dolfin is now the only reverse dependency holding up the libcgal11 >> transition. >> >> What are the options? >> (

Bug#780359: Options w.r.t. libcgal11 transition

2015-05-12 Thread Johannes Ring
On Tue, May 12, 2015 at 10:29 AM, Jonathan Wiltshire wrote: > On 2015-05-12 09:07, Johannes Ring wrote: >> >> On Mon, May 11, 2015 at 11:35 PM, Joachim Reichel >> wrote: >>> >>> Hi, >>> >>> dolfin is now the only reverse dependency hold

Bug#780359: Options w.r.t. libcgal11 transition

2015-05-13 Thread Johannes Ring
On Wed, May 13, 2015 at 12:19 AM, Jonathan Wiltshire wrote: > Ok, please go ahead now. To upload to unstable from experimental, just add a > changelog entry with "Upload to unstable" and an incremented version. Thank you, I have uploaded dolfin to unstable now. > Your only r-dep is fenics, which

Bug#787796: fenics fresh installation is broken

2015-06-05 Thread Johannes Ring
On Fri, Jun 5, 2015 at 9:03 AM Massimiliano Leoni < leoni.massimilia...@gmail.com> wrote: > Versions of packages fenics depends on: > ii dolfin-bin 1.5.0-2 > ii dolfin-doc 1.5.0-2 > ii libdolfin-dev 1.5.0-2 > ii python-dolfin 1.5.0-2 > I can't reproduce this with the latest dolf

Bug#774575: Annual ping for Johannes Ring

2015-01-04 Thread Johannes Ring
Package: debian-maintainers Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi, This is my annual ping. Thanks for your attention, Johannes -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBAgAGBQJUqWIJAAoJEIsTRN6fgH8UOFsQANh6RTof48pbLh9iJ7iL95Si 1Oiu60uN0doUFKokPMWRTiMsA

Bug#804465: dolfin: FTBFS: wants ufc 1.5.0

2015-11-09 Thread Johannes Ring
dolfin version 1.6.0 will fix this problem. It is currently sitting in the new queue. Johannes On Sun, Nov 8, 2015 at 8:09 PM Chris West (Faux) < solo-debianb...@goeswhere.com> wrote: > Source: dolfin > Version: 1.5.0-4 > Severity: serious > Justification: fails to build from source > Tags: sid

Bug#766584: fenics: Fenics to be removed with recent dist-upgrade

2014-10-28 Thread Johannes Ring
Hi Massimiliano, Do you still have this problem? If so, can you please give us some more information? For instance, what do you get when you run the following command? # apt-get -s dist-upgrade Johannes On Fri, Oct 24, 2014 at 8:29 AM, Massimiliano Leoni wrote: > Package: fenics > Version: 1:1

Bug#809820: Annual ping for Johannes Ring

2016-01-04 Thread Johannes Ring
Package: debian-maintainers Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello, This is my annual ping. Cheers, Johannes -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBAgAGBQJWil0mAAoJEIsTRN6fgH8U2twP/0N8gADMlOGttkebIKd8mtZb IMLcAwnYnUy7XcpzUPkc1D/7jpv+1gkDUWE29mlRp

Bug#863828: python3-instant: undefined symbol: PyClass_Type during interpolate

2017-06-01 Thread Johannes Ring
On Wed, May 31, 2017 at 6:26 PM, Drew Parsons wrote: > $ instant-clean-3 > $ ipython3 > Python 3.5.3 (default, Jan 19 2017, 14:11:04) > In [1]: from fenics import * # dolfin module behaves the same > In [2]: mesh = UnitSquareMesh(2, 2) > In [3]: V = FunctionSpace(mesh, 'P', 1) > In [4]: u = inter

Bug#863829: python2: dolfin 'module' object has no attribute 'cpp'

2017-06-01 Thread Johannes Ring
On Wed, May 31, 2017 at 6:37 PM, Drew Parsons wrote: > Weird, the new python3 module seems to have broken the python2 dolfin > module. That's not good. > > Importing dolfin gives the error: > AttributeError: 'module' object has no attribute 'cpp' The problem is that the Python 2 modules for dolf

Bug#863828: python3-instant: undefined symbol: PyClass_Type during interpolate

2017-06-01 Thread Johannes Ring
On Thu, Jun 1, 2017 at 10:24 AM, Drew Parsons wrote: > Should the vtk section in UseDOLFIN.cmake be controlled with some > python3 test, so VTK is still pulled in for python2? Yes, we can do that, although I believe the vtk section in UseDOLFIN.cmake is not important. I will make a patch. Johann

Bug#863828: python3-instant: undefined symbol: PyClass_Type during interpolate

2017-06-06 Thread Johannes Ring
On Fri, Jun 2, 2017 at 7:34 PM, Drew Parsons wrote: > It's still failing, with python-ffc 2016.2.0-3 and libdolfin-dev > 2016.2.0-4 (with UseDOLFIN.cmake patched). Oh, sorry I forgot that this patch is needed for instant: https://bitbucket.org/fenics-project/instant/commits/67be09da6e9cd8907bddba

Bug#846512: ITP: dijitso -- distributed just-in-time building of shared libraries

2016-12-01 Thread Johannes Ring
Package: wnpp Severity: wishlist Owner: Johannes Ring X-Debbugs-Cc: debian-de...@lists.debian.org,debian-science-maintain...@lists.alioth.debian.org * Package name: dijitso Version: 2016.2.0 Upstream Author: Martin Sandve Alnæs * URL: https://fenicsproject.org * License: LGPL-3

Bug#851183: fenics: Misses important 'mshr' module

2017-01-13 Thread Johannes Ring
On Thu, Jan 12, 2017 at 8:35 PM, Hagen Fuchs wrote: > Fenics/Dolfin contains the core module 'mshr' which deals in meshes. > All current examples seem to be employing 'mshr', eg. > https://fenicsproject.org/qa/9414/fenics-mesh-generation-mark-inner-region No, not really - none of the demo program

Bug#850020: Annual ping for Johannes Ring

2017-01-03 Thread Johannes Ring
Package: debian-maintainers Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello, This is my annual ping. Cheers, Johannes -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBAgAGBQJWil0mAAoJEIsTRN6fgH8U2twP/0N8gADMlOGttkebIKd8mtZb IMLcAwnYnUy7XcpzUPkc1D/7jpv+1gkDUWE29mlRp

Bug#502980: ITP: ffc -- compiler for finite element variational forms

2008-10-21 Thread Johannes Ring
C++) for the evaluation of a multilinear form given in mathematical notation. This new approach to form evaluation makes it possible to combine generality with efficiency; the form can be given in mathematical notation and the generated code is as efficient as hand-optimized code. Johannes Ring

Bug#503072: ITP: ufc -- unified code generation interface for form-compilers

2008-10-22 Thread Johannes Ring
already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#503074: ITP: ferari -- optimizations for evaluation of variational forms

2008-10-22 Thread Johannes Ring
automatically reduce instructions) generates optimized code for evaluation of the element tensor (element stiffness matrix) and functions as an optimizing backend for FFC. A version of the Debian files is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE

Bug#503077: ITP: fiat -- tabulation of finite element function spaces

2008-10-22 Thread Johannes Ring
Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#503082: ITP: dolfin -- C++/Python library for solving differential equations

2008-10-22 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: [EMAIL PROTECTED] Package name: dolfin Version: 0.8.1 Upstream authors: Anders Logg and Garth N. Wells URL: http://www.fenics.org/wiki/DOLFIN License: LGPL Description: C++/Python library for solving differential equations DOLFIN is the C++/Python in

Bug#503079: ITP: instant -- simple inlining of C / C++ code in Python

2008-10-22 Thread Johannes Ring
a Python module that allows for instant inlining of C and C++ code in Python. It is a small Python module built on top of SWIG and Distutils. A version of the Debian files is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL

Bug#503264: ITP: viper -- minimalistic scientific plotter and run-time visualization module

2008-10-23 Thread Johannes Ring
formats o Can be used as standalone plotting application, or used as part of PyDOLFIN A version of the Debian files is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Cont

Bug#503265: ITP: fenics -- automation of computational mathematical modeling

2008-10-23 Thread Johannes Ring
, FErari, FFC, FIAT, Instant, Ko, Puffin, SyFi, UFC and Viper. A version of the Debian files is already available in the pkg-scicomp Subversion repository. Johannes Ring -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#511117: libpetsc2.3.3: unmet dependencies

2009-01-07 Thread Johannes Ring
Package: libpetsc2.3.3 Version: 2.3.3-15 When trying to install libpetsc2.3.3 on Debian unstable I got the following error: # apt-get install libpetsc2.3.3 Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean

Bug#524009: ITP: ufl -- unified language for form-compilers

2009-04-14 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org Package name: ufl Version: 0.2.0 Upstream authors: Anders Logg and Martin Sandve Alnæs URL: http://www.fenics.org/wiki/UFL License: GPL Description: unified language for form-compilers UFL (Unified Form Language) is a un

Bug#522287: [Pkg-scicomp-devel] Bug#522287: Bug#522287: [petsc] fail to execute code linked with petsc

2009-05-13 Thread Johannes Ring
Hi, I have the same problem as Christophe. I created a makefile for Christophe's simple code (t.cpp) by adapting one of the makefiles from the PETSc examples. My makefile looks like this: include ${PETSC_DIR}/conf/base t: t.o chkopts -${CLINKER} -o t t.o ${PETSC_LIB} ${RM} -f t.o

Bug#528633: ITP: syfi -- finite element engine based on symbolic mathematics

2009-05-14 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org Package name: syfi Version: 0.6.0 Upstream authors: Martin Sandve Alnæs and Kent-Andre Mardal URL: http://www.fenics.org/wiki/SyFi License: GPL Description: finite element engine based on symbolic mathematics The finite

Bug#538853: ITP: scitools -- Python library for scientific computing

2009-07-27 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org Package name: scitools Version: 0.6 Upstream authors: Hans Petter Langtangen, Johannes H. Ring, Ilmar Wilbers, and Rolv E. Bredesen URL: http://scitools.googlecode.com/ License: BSD Description: Python library for scienti

Bug#538854: ITP: swiginac -- Python interface to GiNaC

2009-07-27 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org Package name: swiginac Version: 1.5.1 Upstream authors: Ola Skavhaug and Ondrej Certik URL: http://swiginac.berlios.de/ License: GPL Description: Python interface to GiNaC Swiginac is a Python interface to GiNaC, built w

Bug#538853: ITP: scitools -- Python library for scientific computing

2009-07-28 Thread Johannes Ring
Hi Guillaume, On Tue, July 28, 2009 16:47, Guillaume Pellerin wrote: > Johannes Ring wrote: >> Package: wnpp >> Severity: wishlist >> X-Debbugs-CC: debian-de...@lists.debian.org >> >> Package name: scitools > > You need to name your package as descri

Bug#538854: ITP: swiginac -- Python interface to GiNaC

2009-07-28 Thread Johannes Ring
On Tue, July 28, 2009 16:48, Guillaume Pellerin wrote: > Johannes Ring wrote: >> Package: wnpp >> Severity: wishlist >> X-Debbugs-CC: debian-de...@lists.debian.org >> >> Package name: swiginac >> Version: 1.5.1 >> Upstream authors: Ola Skavhaug and Ond

Bug#538853: ITP: scitools -- Python library for scientific computing

2009-07-29 Thread Johannes Ring
Hi Sandro, On Wed, July 29, 2009 09:12, Sandro Tosi wrote: > On Wed, Jul 29, 2009 at 08:25, Johannes Ring wrote: >> Hi Guillaume, >> >> On Tue, July 28, 2009 16:47, Guillaume Pellerin wrote: >>> Johannes Ring wrote: >>>> Package: wnpp >>&g

Bug#530625: [Pkg-scicomp-devel] Bug#530625: libslepc3.0.0-dev: Paths broken so petsc is unable to find slepc

2009-07-30 Thread Johannes Ring
I am unable to reproduce this error. Could you please provide a simple test case where you get this error? Also please read the README.Debian file for instructions on how to build programs against SLEPc. Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a su

Bug#528122: [Pkg-scicomp-devel] Bug#528122: libslepc3.0.0: missing link to parpack

2009-07-30 Thread Johannes Ring
Hi Adam, On Sun, May 10, 2009 17:47, Adam C Powell IV wrote: > The slepc shared lib needs to be linked with -lparpack . Without that > link, building against it results in: > > /usr/lib/slepc/linux-gnu-c-opt/lib/libslepc.so: undefined reference to > `pdneupd_' > /usr/lib/slepc/linux-gnu-c-opt/lib

Bug#543097: [Pkg-scicomp-devel] Bug#543097: dolfin: FTBFS: Please install SWIG version 1.3.36 or recompile UFC with present SWIG.

2009-08-24 Thread Johannes Ring
Hi Lucas, Thanks for the report. The problem is that both UFC and DOLFIN has to be built with the same version of SWIG. In this case, UFC has been built with SWIG 1.3.36 while DOLFIN was rebuilt with SWIG 1.3.39. The proper fix in this situation would be to rebuild UFC with the current SWIG and th

Bug#608472: Annual ping for Johannes Ring

2010-12-31 Thread Johannes Ring
Package: debian-maintainers Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hello, This is my annual ping. Thanks for your attention, Johannes -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.10 (GNU/Linux) iQIcBAEBCAAGBQJNHZf5AAoJEIsTRN6fgH8UrKkQAK+MJYHmlFZJG1uTSPTjetuf bF3

Bug#612606: SCOTCH_PTSCOTCH not defined in ptscotch.h

2011-03-18 Thread Johannes Ring
This bug was introduced in 5.1.11.dfsg-3 by the patch "no-extra-clean.patch". I don't see what benefits this patch adds (other than a somewhat reduced build time) so please remove it in the next upload. Thanks, Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org wit

Bug#612621: ERROR: SCOTCH_dgraphInit: linking with both libScotch and libPTScotch is not allowed

2011-03-18 Thread Johannes Ring
Hi! The attached patch fixes this issue. Please apply and reupload such that we can get PT-SCOTCH working again in Debian. Thank you very much! Best regards, Johannes diff --git a/debian/Makefile.inc b/debian/Makefile.inc index 45dfab8..dbdc97c 100644 --- a/debian/Makefile.inc +++ b/debian/Make

Bug#612621: ERROR: SCOTCH_dgraphInit: linking with both libScotch and libPTScotch is not allowed

2011-03-28 Thread Johannes Ring
Hi Pierre, On Mon, Mar 28, 2011 at 12:56 PM, Pierre Saramito wrote: > Hello ! > > Despite the recent patch applied in version 5.1.11.dfgs-4, > the bug seems to be still present on sid/amd64 : Yes, I also noticed that. I have reopened the bug now. >    uname -a >        Linux mobydick 2.6.32-5-a

Bug#612621: ERROR: SCOTCH_dgraphInit: linking with both libScotch and libPTScotch is not allowed

2011-03-28 Thread Johannes Ring
On Mon, Mar 28, 2011 at 2:07 PM, trophime wrote: > On Mon, 2011-03-28 at 12:56 +0200, Pierre Saramito wrote: >>     mpic++ -o ptscotch_test ptscotch_test.cpp -DSCOTCH_PTSCOTCH >> -I/usr/include/scotch -lptscotch -lptscotcherr >>     ./ptscotch_test >>         (0): ERROR: SCOTCH_dgraphInit: linkin

Bug#612606: SCOTCH_PTSCOTCH not defined in ptscotch.h

2011-02-09 Thread Johannes Ring
Package: libptscotch-dev Version: 5.1.11.dfsg-3 Hi, The file /usr/include/scotch/ptscotch.h does not define SCOTCH_PTSCOTCH as it should. When I build SCOTCH and PT-SCOTCH manually I see the following in ptscotch.h: #ifndef SCOTCH_PTSCOTCH #define SCOTCH_PTSCOTCH #endif /* SCOTCH_PTSCOTCH

Bug#612602: dolfin: FTBFS: error: 'SCOTCH_Dgraph' was not declared in this scope

2011-02-09 Thread Johannes Ring
Jakub, Thanks for your report. This error is because ptscotch.h in libptscotch-dev does not define SCOTCH_PTSCOTCH as it did before. I have filed a bug report for that package (#612606). Thanks again, Johannes On Wed, Feb 9, 2011 at 2:58 PM, Jakub Wilk wrote: > Source: dolfin > Version: 0.9.9-

Bug#612606: SCOTCH_PTSCOTCH not defined in ptscotch.h

2011-02-09 Thread Johannes Ring
On Wed, Feb 9, 2011 at 4:28 PM, trophime wrote: > On Wed, 2011-02-09 at 15:56 +0100, Johannes Ring wrote: >> Package: libptscotch-dev >> Version: 5.1.11.dfsg-3 >> >> Hi, >> >> The file /usr/include/scotch/ptscotch.h does not define >> SCOTCH_PTSC

Bug#612621: ERROR: SCOTCH_dgraphInit: linking with both libScotch and libPTScotch is not allowed

2011-02-09 Thread Johannes Ring
Package: libptscotch-dev Version: 5.1.11.dfsg-3 Hi, Compiling and running a simple program (see below) for testing PT-SCOTCH results in the following error: $ mpic++ -o ptscotch_test ptscotch_test.cpp -DSCOTCH_PTSCOTCH -I/usr/include/scotch -lptscotch -lptscotcherr $ ./ptscotch_test ERROR:

Bug#619935: src:scotch: FTBFS on several arches due to lex issue

2011-03-28 Thread Johannes Ring
Hi Adam, On Mon, Mar 28, 2011 at 3:46 PM, Adam C Powell IV wrote: > Package: src:scotch > Version: 5.1.11.dfsg-4 > Severity: serious > > Scotch FTBFS on i386, ia64, kfreebsd-i386, mips[el] and sparc: > > (flex parser_ll.l &&                    \ >                                         mv lex.yy

Bug#612621: ERROR: SCOTCH_dgraphInit: linking with both libScotch and libPTScotch is not allowed

2011-03-28 Thread Johannes Ring
Hi Adam, On Mon, Mar 28, 2011 at 3:55 PM, Adam C Powell IV wrote: > Hi Johannes, > > On Mon, 2011-03-28 at 13:44 +0200, Johannes Ring wrote: >> On Mon, Mar 28, 2011 at 12:56 PM, Pierre Saramito >> wrote: >> > Hello ! >> > >> > Despite the recent

Bug#619935: src:scotch: FTBFS on several arches due to lex issue

2011-03-30 Thread Johannes Ring
Hi Pierre, On Wed, Mar 30, 2011 at 2:24 PM, Pierre Saramito wrote: > Hi Adam and Johannes, > >> > From Adam: >> > parser_ll.l:123:31: error: 'yylval' undeclared (first use in this function) > >> From Johannes: >> I couldn't (for some unknown reason) reproduce this in a pbuilder > > > I get the la

Bug#612621: Bugs #619935 & #612621 : most debian/* files rewritten + patches

2011-04-01 Thread Johannes Ring
Hi Adam and Pierre, On Fri, Apr 1, 2011 at 1:38 PM, Adam C Powell IV wrote: > * I noticed that you removed -I/usr/include/lam from the CCS and >CCD commands. I don't remember the exact reasons, but those >were required for the LAM architectures. /usr/include/mpi >sh

Bug#620701: ITP: preprocess -- a portable multi-language file preprocessor

2011-04-03 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org, python-modules-t...@lists.alioth.debian.org Package name: preprocess Version: 1.1.0 Upstream authors: Trent Mick URL: http://preprocess.googlecode.com/ License: MIT Description: a portable multi-language file preprocess

Bug#621037: scotch: missing inter-library links

2011-04-06 Thread Johannes Ring
Hi Adam, On Wed, Apr 6, 2011 at 1:47 PM, Adam C Powell IV wrote: > Just put a fix in alioth, let me know if it gives you trouble.  I plan > to upload within 4-5 hours. Sorry, I tried your fix but it gives me trouble because libptscotch is linked against libscotch. This is the same problem as rep

Bug#621037: scotch: missing inter-library links

2011-04-06 Thread Johannes Ring
On Wed, Apr 6, 2011 at 4:29 PM, Adam C Powell IV wrote: > Thanks very much Johannes. > > On Wed, 2011-04-06 at 16:11 +0200, Johannes Ring wrote: >> On Wed, Apr 6, 2011 at 3:12 PM, Adam C Powell IV wrote: >> > Hi Johannes, >> > >> > On Wed, 2011-04-06 at

Bug#621037: scotch: missing inter-library links

2011-04-06 Thread Johannes Ring
On Wed, Apr 6, 2011 at 3:12 PM, Adam C Powell IV wrote: > Hi Johannes, > > On Wed, 2011-04-06 at 14:37 +0200, Johannes Ring wrote: >> Hi Adam, >> >> On Wed, Apr 6, 2011 at 1:47 PM, Adam C Powell IV wrote: >> > Just put a fix in alioth, let me know if it gives

Bug#576865: [Pkg-scicomp-devel] Bug#576865: python-pytrilinos: PyTrilinos modules not linking to correct libraries.

2010-04-08 Thread Johannes Ring
Hi, This bug does not affect this package in Debian since version 9.0.3.dfsg-1 is no longer in Debian. Johannes On Wed, Apr 7, 2010 at 10:05 PM, Nuno Sucena Almeida wrote: > Package: python-pytrilinos > Version: 9.0.3.dfsg-1 > Severity: grave > Justification: renders package unusable > > > Two

Bug#584222: ITP: vmtk -- the Vascular Modeling Toolkit

2010-06-02 Thread Johannes Ring
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org, Package name: vmtk Version: 0.9 Upstream authors: Luca Antiga, David Steinman URL: http://www.vmtk.org License: BSD, Modified MIT Description: the Vascular Modeling Toolkit The Vascular Modeling Toolkit is a collection

Bug#584551: libpetsc3.1 empty on non-amd64 architectures

2010-06-04 Thread Johannes Ring
Package: libpetsc3.1 Version: 3.1.dfsg-3 The package libpetsc3.1 is empty on all architectures except on amd64. $ dpkg -L libpetsc3.1 /. /usr /usr/lib /usr/share /usr/share/doc /usr/share/doc/libpetsc3.1 /usr/share/doc/libpetsc3.1/changelog.Debian.gz /usr/share/doc/libpetsc3.1/copyright -- To

Bug#581897: python-ffc: ffc -l dolfin gives an error

2010-05-19 Thread Johannes Ring
Hi Francis, Thanks for your report. You need to install python-dolfin when using the '-l dolfin' option. I will add python-dolfin to Suggests in python-ffc. Johannes On Mon, May 17, 2010 at 4:09 AM, Francis Russell wrote: > Package: python-ffc > Version: 0.9.2-2 > Severity: important > > > Atte

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