Bug#868073: bioperl-run: FTBFS: t/Bowtie.t failure

2017-09-16 Thread Andreas Tille
control: forwarded -1 https://github.com/bioperl/bioperl-run/issues/52 control: tags -1 upstream I have forwarded the issue upstream. I think the issue occures since there is no such executable bowtie-align any more. The executables that are shipped with bowtie are named bowtie-align-l or bowtie-

Bug#868073: bioperl-run: FTBFS: t/Bowtie.t failure

2017-07-11 Thread Niko Tyni
Package: bioperl-run Version: 1.7.1-3 Severity: serious This package falis to build on current sid/amd64. >From the build log: - EXCEPTION - MSG: /usr/bin/bowtie call crashed: There was a problem running /usr/bin/bowtie : Encountered a space parsing the quality strin