Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2017-02-07 Thread Andreas Tille
severity 848903 serious thanks Hi Graham, On Tue, Feb 07, 2017 at 02:17:52PM +0200, Graham Inggs wrote: > On 07/02/2017 04:23, merlettaia wrote: > >I assume that this patch makes metastudent work with blast+ correctly. > > FWIW, your patch made metastudent pass its autopkgtests against ncbi-blas

Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2017-02-07 Thread Graham Inggs
Hi Tanya, Andreas On 07/02/2017 04:23, merlettaia wrote: I assume that this patch makes metastudent work with blast+ correctly. FWIW, your patch made metastudent pass its autopkgtests against ncbi-blast+ 2.6.0-1 in Ubuntu [1]. Andreas, I notice you marked this bug 'pending'. Do you plan to

Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2017-02-06 Thread merlettaia
Hi Andreas, I've managed to finish patch for metastudent (I've checked it several times and tried to make it to be compatible with old version of blast as well, although I didn't checked "studentC" part with legacy blast, only with latest version). Some details on how I checked: I've run metastud

Bug#848903: Bug#848394: Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2016-12-23 Thread merlettaia
Hi Andreas, This bug slightly differs from #848394.It relates to newer version of blast2 packages, for now it seems that it appeared because blast2 output has changed. For now it is clear that this error message in metastudent run log: Error: number of fastas and blasts dont match: 3 1 - appe

Bug#848903: Bug#848394: Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2016-12-23 Thread Andreas Tille
On Tue, Dec 20, 2016 at 08:15:48PM +0100, Andreas Tille wrote: > I just notice a commit from Tanya so according to the commit log > the issue seems to be solved. :-) (Well done! ;-) ) Hmm, I notice that while #848394 is really done bug #848903 with the failed tests was not addressed. Tanya, I th

Bug#848394: Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2016-12-20 Thread Andreas Tille
I just notice a commit from Tanya so according to the commit log the issue seems to be solved. :-) (Well done! ;-) ) On Tue, Dec 20, 2016 at 08:14:05PM +0100, Andreas Tille wrote: > Hi Graham, > > thanks for the bug reports. > > On Tue, Dec 20, 2016 at 06:58:23PM +0200, Graham Inggs wrote: > >

Bug#848394: Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2016-12-20 Thread Andreas Tille
Hi Graham, thanks for the bug reports. On Tue, Dec 20, 2016 at 06:58:23PM +0200, Graham Inggs wrote: > Metastudent 2.0.1-3 has been consistently failing its autopkgtests > since 2016-12-05 [1]. > > This corresponds to the upload of ncbi-tools6 6.1.20160908-1. > Previous tests were successful wit

Bug#848903: metastudent: autopkgtests fail since 2016-12-05

2016-12-20 Thread Graham Inggs
Source: metastudent Version: 2.0.1-3 Severity: normal Hi maintainer Metastudent 2.0.1-3 has been consistently failing its autopkgtests since 2016-12-05 [1]. This corresponds to the upload of ncbi-tools6 6.1.20160908-1. Previous tests were successful with ncbi-tools6 6.1.20120620-12. I'm not sure