Bug#802867: [Debian-med-packaging] Bug#802867: pyqi not running in python-biom-format build

2015-10-27 Thread Tim Booth
Hi Andreas, > Well, "is not used" is interesting - but why is it called then and leads > to an error? It is called explicitly in debian/rules. It may even have been me who originally added the line. It works for 2.1.4. All it does is generate the BASH completions so I wouldn't call it critical

Bug#802867: pyqi not running in python-biom-format build

2015-10-27 Thread Tim Booth
s a very significant change from 2.1.4 to 2.1.5 with other things aside from PyQi. The minor change in version number is misleading! TIM -- Tim Booth Centre for Ecology and Hydrology Maclean Bldg, Benson Lane Crowmarsh Gifford Wallingford, England OX10 8BB http://environmentalomics.org/b

Bug#794334: [Pkg-amule-devel] Bug#794334: ea-utils: /usr/bin/alc already used by amule-utils-gui

2015-08-10 Thread Tim Booth
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=794334 Hi, If I were the overlord of Debian I'd say that GUI-only commands should not take up any "precious" 3-letter command names, but as I'm not I agree that we need to respect the principle of first-come-first-served. Andreas' fix should work

Bug#776812: usage of -mtune=core2 ? (Was: Bug#776812: vsearch: FTBFS on non-x86: uses non-portable flags)

2015-02-02 Thread Tim Booth
Hi All, Sure, I can do some performance tests. The tests supplied with the software are specifically to test performance so I can run those with various build flags and see what we get. Maybe also enabling link-time optimisation would help here - I've not really played with that myself yet. The

Bug#776663: zsh-common: Wish for /etc/zsh/zprofile.d or equivalent

2015-01-30 Thread Tim Booth
Package: zsh-common Version: 5.0.2-3ubuntu6 Severity: wishlist This is a request on behalf of Bio-Linux and the Debian Med developers. The attached file shows the zshrc used on Bio-Linux, and the part we'd really like to see in the standard zsh-common package is support for a zprofile.d configura

Bug#742691: New version of python-biom-format (Was: Bug#742691: please make robust against ad-hoc (pre/post released) versions of cython)

2014-03-31 Thread Tim Booth
latest version installed it does not *build* > any more with this new version as (Build-)Depends. > > Any idea? > > Kind regards > >Andreas. > -- Tim Booth NERC Environmental Bioinformatics Centre Centre for Ecology and Hydrology Maclean Bldg, Benson Lane Crowmarsh G

Bug#742691: New version of python-biom-format (Was: Bug#742691: please make robust against ad-hoc (pre/post released) versions of cython)

2014-03-27 Thread Tim Booth
/pypi.python.org/pypi/pyqi/). Did you already do that? Also, can this now be arch=all or is there still something being compiled that I missed? Cheers, TIM -- Tim Booth NERC Environmental Bioinformatics Centre Centre for Ecology and Hydrology Maclean Bldg, Benson Lane Crowmarsh Gifford Wal

Bug#729476: php5-cli: Unexpected behaviour of empty() function

2013-11-13 Thread Tim Booth
Package: php5-cli Version: 5.4.4-14+deb7u5 Severity: important The documented behaviour of the empty() function is to be a shorthand for "!isset($var) || var == false". The below example shows a case where this fails, and was triggering a subtle bug in my code after upgrade of production server t

Bug#617425: Working on this package

2013-04-09 Thread Tim Booth
javacc_5.0-5fix1ubuntu2.dsc TIM -- Tim Booth NERC Environmental Bioinformatics Centre Centre for Ecology and Hydrology Maclean Bldg, Benson Lane Crowmarsh Gifford Wallingford, England OX10 8BB http://nebc.nerc.ac.uk +44 1491 69 2705 -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.

Bug#617425: Working on this package

2013-02-24 Thread Tim Booth
Hi, Just to let people know I've committed my initial work to get this building. This is not complete and will not yet produce binary debs you can use, but I'm progressing. I'm trying to make a drop-in replacement for the sun-javadb-* packages in Ubuntu multiverse. I believe there is no longer

Bug#662513: RM: emboss/6.3.1-6

2012-03-05 Thread Tim Booth
Hi Charles, I'll be up at the EBI in a couple of weeks. Is there anything I can do to try and persuade them to grant an acceptable license or has this already been tried? EMBOSS is a software package that I still consider to be very important, even though development is currently stalled due to

Bug#639996: [Debian-med-packaging] Bug#639996: Bug#639996: fastdnaml is not able to start in GNOME

2011-09-01 Thread Tim Booth
There is an icon for fastDNAml in BL6, but it serves absolutely no useful function whatsoever, since all it does is to bring up a terminal and show the version of fastDNAml which is installed. So I've made a note to remove the icon in BL6, unless I can be bothered to add a wrapper script that does

Bug#451245: gtk2-engines: Warning seen: /usr/share/themes/Mist/gtk-2.0/gtkrc:6: Invalid symbolic color 'fg_color'

2007-11-15 Thread Tim Booth
set. TIM On Thu, 2007-11-15 at 10:19 +0100, Josselin Mouette wrote: > Hi, > > Le mercredi 14 novembre 2007 à 14:48 +0000, Tim Booth a écrit : > > [EMAIL PROTECTED] /usr/share/themes/Mist/gtk-2.0/gtkrc > > /usr/share/themes/Mist/gtk-2.0/gtkrc:6: Invalid symbolic color 

Bug#451245: gtk2-engines: Warning seen: /usr/share/themes/Mist/gtk-2.0/gtkrc:6: Invalid symbolic color 'fg_color'

2007-11-14 Thread Tim Booth
Hi, > Can you try with gnome-appearance-properties instead? This might need > the unstable version of control-center. I don't want to tinker with unstable packages on this particular machine as it's my work laptop. I'll try and reproduce the problem on another box that I can more easily play

Bug#451245: gtk2-engines: Warning seen: /usr/share/themes/Mist/gtk-2.0/gtkrc:6: Invalid symbolic color 'fg_color'

2007-11-14 Thread Tim Booth
Hi Loïc, > Could you please mention the exact error message? I don't get any > error when using hte Mist theme here. I would also be curious to know > with which application you get this. I originally noticed the error running gvim, but I also see it with gnome-theme-manager (I use KDE as my

Bug#451245: gtk2-engines: Warning seen: /usr/share/themes/Mist/gtk-2.0/gtkrc:6: Invalid symbolic color 'fg_color'

2007-11-14 Thread Tim Booth
Package: gtk2-engines Version: 1:2.10.2-2 Severity: normal Tags: patch When using the Mist theme I see the error above on starting any GTK application. The cause is pretty obvious and easily rectified - the first line of the file defines "gtk-color-scheme" but it should be "gtk_color_scheme" - i

Bug#417587: chbg: -windowid argument is incompatible with xscreensaver

2007-04-03 Thread Tim Booth
Package: chbg Version: 1.5-9 Severity: normal The program supports an -xscreensaver mode, which seems to work fine, but no preview is available. The only reason for the preview failing seems to be that xscreensaver uses -window-id to draw to the preview window but chbg spells this without the hyp

Bug#397337: libxml-libxslt-perl: New upstream version 1.61 available with significant bug fixes

2006-11-06 Thread Tim Booth
Package: libxml-libxslt-perl Version: 1.59-1 Severity: normal The newer version of this module comes with the comments: - fix a huge memory leak in transform_file - fixed error reporting - fix segfault with registered functions returning nodes And several other updates, but these are the ones th