Bug#1094346: ITP: r-cran-dharma -- Residual Diagnostics for Hierarchical (Multi-Level / Mixed)

2025-01-27 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-dharma -- Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-dharma Version

Bug#1094342: ITP: r-cran-gap -- Genetic Analysis Package

2025-01-27 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-gap -- Genetic Analysis Package Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-gap Version : 1.6 Upstream Author : Jing Hua Zhao

Bug#1094340: ITP: r-cran-gap.datasets -- Datasets for 'gap'

2025-01-27 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-gap.datasets -- Datasets for 'gap' Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-gap.datasets Version : 0.0.6 Upstr

Bug#1094338: ITP: r-cran-qgam -- Smooth Additive Quantile Regression Models

2025-01-27 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-qgam -- Smooth Additive Quantile Regression Models Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-qgam Version : 1.3.4 Upstream

Bug#1067249: r-cran-bayestestr: autopkgtest timeouts on i386

2025-01-26 Thread Michael R. Crusoe
Since version 0.13.2-1of r-cran-bayesestr, the autopkgtest rely on r-cran-glmmtmb , which is not available for 32-bit architectures. Testing locally by softening the dependency on r-cran-gmmtmb to ignore i386, the tests time hang for me as well. So I've added a skip for autopkgtests if any dep

Bug#1093869: pybuild setuptools: enable parallel building of extensions via DIST_EXTRA_CONFIG

2025-01-23 Thread Michael R. Crusoe
Package: dh-python Version: 6.20240603 Severity: wishlist File: /usr/share/dh-python/pybuild X-Debbugs-Cc: debian-pyt...@lists.debian.org, cru...@debian.org Dear Maintainers, Please enhance pybuild (when using setuptools via the default plugin, or when using the pyproject plugin and the build b

Bug#1093834: ITP: r-cran-cards -- Analysis Results Data

2025-01-23 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-cards -- Analysis Results Data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-cards Version : 0.4.0 Upstream Author : Daniel D

Bug#1037521: (no subject)

2025-01-20 Thread Michael R. Crusoe
On Sun, 21 Apr 2024 16:33:02 +0200 Simon Ruderich wrote: Hi, On Fri, Apr 05, 2024 at 12:48:19AM -0400, Yogeswaran Umasankar wrote: > eribe...@debian.org, Matthias Geiger > Bcc: Subject: Re: false positive NONVERBOSE BUILD for rust code in Python > modules > Reply-To: Hi, > > I am having simila

Bug#1093424: ITP: r-cran-s7 -- An Object Oriented System Successor to S3 and S4

2025-01-18 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-s7 -- An Object Oriented System Successor to S3 and S4 Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-s7 Version : 0.2.0 Upstream

Bug#1091066: r-bioc-genomicfiles: FTBFS: build-dependency not installable: r-api-bioc-3.20

2025-01-13 Thread Michael R. Crusoe
Version: 1.42.0+dfsg-1 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1091048: r-bioc-biovizbase: FTBFS: build-dependency not installable: r-api-bioc-3.20

2025-01-13 Thread Michael R. Crusoe
Version: 1.54.0-1 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1092083: mayavi2 ftbfs with Python 3.13 as the default

2025-01-12 Thread Michael R. Crusoe
On Tue, 7 Jan 2025 15:35:10 + Colin Watson wrote: On Sat, Jan 04, 2025 at 12:36:21PM +0100, Matthias Klose wrote: > mayavi2 ftbfs with Python 3.13 as the default Most of this is due to vtk9. I've attached a patch cherry-picked from upstream which fixes this. There's one remaining problem

Bug#1088701: transition: r-bioc-biocgenerics (r-api-bioc-3.20)

2025-01-09 Thread Michael R. Crusoe
Control: tags -1 - moreinfo On Sun, 1 Dec 2024 11:44:04 + Graham Inggs wrote: > Control: tags -1 + moreinfo > > Hi MIchael > > On Fri, 29 Nov 2024 at 17:54, Michael R. Crusoe wrote: > > I would like a transition slot for Bioconductor 3.20. > > > > We

Bug#1087826: r-bioc-rhdf5: FTBFS with HDF5 1.14: ‘H5I_REFERENCE’ undeclared (first use in this function)

2024-12-11 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/grimbough/rhdf5/issues/147 I've confirmed that the latest release of rhdf5 still FTBFS with libhdf4 1.14 and I've informed upstream about the issue. I uploaded the patch, and while it did work for amd64, mips64el, and ppc64el; the build failed for arm64

Bug#1089546: [Debian-med-packaging] Bug#1089546: RM: khmer -- ROM; abandoned upstream, RC buggy, no redpends

2024-12-09 Thread Michael R. Crusoe
Control: block -1 by 919681 We need to wait until the replacement package "sourmash" is in the archive. OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1089150: ITP: python-rich-argparse -- Rich help formatters for argparse and optparse

2024-12-06 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debian-pyt...@lists.debian.org, cru...@debian.org Subject: ITP: python-rich-argparse -- Rich help formatters for argparse and optparse Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-rich-argparse Version

Bug#1088701: Accidental upload of newer r-bioc-biocstyle to unstable ahead of BioConductor 3.20 transition

2024-11-30 Thread Michael R. Crusoe
Dear Release Team, While preparing uploads of the BioConductor 3.20 r-bioc-* packages to the experimental distribution, I accidentally uploaded a newer version of r-bioc-biocstyle (2.34.0+dfsg-1) to unstable. Shall I fix this by rolling back the change with an upload of a r-bioc-biocstyle sour

Bug#1088701: transition: r-bioc-biocgenerics (r-api-bioc-3.20)

2024-11-29 Thread Michael R. Crusoe
Package: release.debian.org Severity: normal X-Debbugs-Cc: r-bioc-biocgener...@packages.debian.org, debia...@lists.debian.org, cru...@debian.org Control: affects -1 + src:r-bioc-biocgenerics Control: block -1 by 1086904 Control: block -1 by 1088299 User: release.debian@packages.debian.org Use

Bug#1088671: lintian: New check requested: 'nproc' used in debian/rules instead of DEB_BUILD_OPTION_PARALLEL

2024-11-29 Thread Michael R. Crusoe
On 29/11/2024 14.14, Andrius Merkys wrote: Hi Michael, On 2024-11-29 12:30, Michael R. Crusoe wrote: It would be great if there was a check for calling `nproc` from debian/rules. Fair point. I looked at codesearch.debian.net for regex 'path:debian/rules \bnproc\b', all hits

Bug#1088671: lintian: New check requested: 'nproc' used in debian/rules instead of DEB_BUILD_OPTION_PARALLEL

2024-11-29 Thread Michael R. Crusoe
Package: lintian Version: 2.120.0 Severity: wishlist X-Debbugs-Cc: cru...@debian.org Hello Lintian people, It would be great if there was a check for calling `nproc` from debian/rules. As per Debian Policy 4.9.1 [0], packages should respect `parallel` in `DEB_BUILD_OPTIONS`. Using `nproc` wit

Bug#1086904: reverse dependencies

2024-11-28 Thread Michael R. Crusoe
Control: tags -1 - moreinfo On Mon, 25 Nov 2024 18:32:43 + (UTC) Thorsten Alteholz wrote:> Hi Michael, Hey Thorsten, there are reverse dependencies that need to be taken care of: Checking reverse dependencies... # Broken Depends: r-bioc-alabaster.ranges: r-bioc-alabaster.ranges r-bioc-

Bug#1088299: ITP: r-bioc-assorthead -- Assorted Header-Only C++ Libraries

2024-11-26 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-assorthead -- Assorted Header-Only C++ Libraries Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-assorthead Version : 1.0.0+ds

Bug#1079674: dipy: test_fss_single_point_slines fails with scipy 1.14

2024-11-25 Thread Michael R. Crusoe
Version: 1.10.0~rc1-2 The new upstream snapshot of dipy passes its tests using scipy 1.14: https://ci.debian.net/packages/d/dipy/testing/amd64/54650601/ OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1088226: RM: mariadb-connector-python [s390x] -- ROM; Tests show that big-endian systems aren't supported

2024-11-25 Thread Michael R. Crusoe
owing packages from unstable: python3-mariadb-connector | 1.1.10-2 | s390x Maintainer: Debian Python Team --- Reason --- -------------- --- Cheers, -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1088101: python3-pyqtgraph: Different QLocale.decimalPoint values, little-endian (amd64,arm64,etc) vs big-endian (s390x)

2024-11-23 Thread Michael R. Crusoe
Package: python3-pyqtgraph Version: 0.13.7-5 Severity: normal X-Debbugs-Cc: cru...@debian.org Affects: python-pymeasure As seen in the autopkgtest tests for python-pymeasure, which recently enabled Qt testing. https://qa.debian.org/excuses.php?package=python-pymeasure Here is a minimal reprod

Bug#1087832: ITP: pyvisa-sim -- Simulated backend for PyVISA implementing TCPIP, GPIB, RS232, and USB resources

2024-11-19 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: pyvisa-sim -- Simulated backend for PyVISA implementing TCPIP, GPIB, RS232, and USB resources Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: pyvisa-sim Version : 0.6.0

Bug#1081618: FTBFS with multiple supported Python 3 versions

2024-11-18 Thread Michael R. Crusoe
Control: not-found -1 indexed-gzip/1.8.7-3

Bug#1087690: [Debian-med-packaging] Bug#1087690: FTBFS with Python 3.13: FAILED skbio/util/tests/test_misc.py::TestMiniRegistry::test_everything

2024-11-17 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/scikit-bio/scikit-bio/commit/45127698e270024bacb670cdd0bd2e4850104b6f Control: tags -1 patch upstream fixed-upstream Should be easy for a team member to apply this patch. I'm away from my computers until at least Tuesday.

Bug#1086904: fix title Re: RM: r-bioc-alabaster.base r-bioc-alabaster.matrix [s390x] -- ROM; big-endian archs are not supported by upstream

2024-11-11 Thread Michael R. Crusoe
Control: retitle -1 RM: r-bioc-alabaster.base, r-bioc-alabaster.matrix [s390x] -- ROM; big-endian archs are not supported by upstream OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1086904: RM: r-bioc-alabaster.base r-bioc-alabaster.matrix [s390x] -- ROM; big-endian archs are not supported by upstream

2024-11-07 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: r-bioc-alabaster.b...@packages.debian.org, r-bioc-alabaster.mat...@packages.debian.org, debia...@lists.debian.org, cru...@debian.org Control: affects -1 + src:r-bioc-alabaster.base Control: affects -1 + src:r-bioc-alabaster.matrix User: ftp.

Bug#1072630: r-cran-dplyr: autopkgtest regression in testing

2024-10-31 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/tidyverse/dplyr/issues/7099 I have opened an issue upstream: https://github.com/tidyverse/dplyr/issues/7099 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1086171: ITP: python-html5rdf -- HTML parser based on the WHATWG HTML specification

2024-10-28 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-html5rdf -- HTML parser based on the WHATWG HTML specification Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-html5rdf Version : 1.2 Upstream Author

Bug#1086108: [Debian-med-packaging] Bug#1086108: scipy: endless loop in expm on riscv64 due to UB float to int conversion

2024-10-28 Thread Michael R. Crusoe
On 26/10/2024 21.21, Aurelien Jarno wrote: Source: scipy Version: 1.13.1-5 Severity: important Tags: ftbfs upstream X-Debbugs-Cc: debian-med-packag...@lists.alioth.debian.org, debian-ri...@lists.debian.org User: debian-ri...@lists.debian.org Usertags: riscv64 Control: affects -1 + src:nipy Contr

Bug#1086031: sqlalchemy: please remove build and test dependency on python3-mypy

2024-10-25 Thread Michael R. Crusoe
/53571095/ Many thanks, -- Michael R. Crusoe From acd15456dc4833519a8795b73bee93b8077fea5b Mon Sep 17 00:00:00 2001 From: "Michael R. Crusoe" Date: Fri, 25 Oct 2024 12:15:09 +0200 Subject: [PATCH] drop dependency on python3-mypy and instruct pytest to not even load the related tests

Bug#1085980: RM: librust-piz-dev [armel armhf i386] -- ROM; No longer built for 32-bit archs

2024-10-24 Thread Michael R. Crusoe
b.com/mrkline/piz-rs/issues/15 [1] https://bugs.debian.org/919681 -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1085983: RM: librust-histogram-dev [armel armhf i386] -- ROM; No longer built for 32-bit archs

2024-10-24 Thread Michael R. Crusoe
rchive. Thank you! [0] https://github.com/pelikan-io/rustcommon/issues/123 [1] https://bugs.debian.org/919681 -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1085443: RM: rust-murmurhash3 [s390x] -- ROM; big-endian isn't working

2024-10-19 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: rust-murmurha...@packages.debian.org, cru...@debian.org Control: affects -1 + src:rust-murmurhash3 User: ftp.debian@packages.debian.org Usertags: remove Please remove the s390x packages from rust-murmurhash3; the scientific software that

Bug#1081929: Proceeding with removal of vg

2024-10-17 Thread Michael R. Crusoe
As per https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1081347#10 , do not remove vg from the archive at this time On Thu, 17 Oct 2024 09:43:40 - Helmut Grohne wrote: Control: severity 1081929 normal Control: retitle 1081929 RM: vg -- RoQA; rc-buggy Control: reassign 1081929 ftp.debian.

Bug#1081694: dipy python3.13

2024-10-14 Thread Michael R. Crusoe
On Fri, 11 Oct 2024 10:18:53 -0700 Stefano Rivera wrote: Control: reopen -1 Control: notfixed -1 1.9.0-6 Looks like there are still more issues to fix: https://github.com/dipy/dipy/pull/3293 https://debusine.debian.net/artifact/847307/ Thank you for the notification. Where can I get a py

Bug#1084681: [Debian-med-packaging] Bug#1084681: toil: removal of Python standard libraries in Python 3.13

2024-10-08 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/DataBiosphere/toil/issues/5119 On 07/10/2024 18.23, Louis-Philippe Véronneau wrote: Dear maintainer(s), Python 3.13 removes a large amount of so called 'dead battery' libraries from the standard library. As such, code that imports these libraries will n

Bug#1081857: arcp: FTBFS: FAIL: test_parse_ni_uri (tests.test_parse.TestParse.test_parse_ni_uri)

2024-10-06 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/stain/arcp-py/issues/3 I've notified upstream. My guess is that https://github.com/python/cpython/issues/67693 which became https://github.com/python/cpython/commit/387ff96e95b9f8a8cc7e646523ba3175b1350669 in Python 3.12.4 is to blame OpenPGP_signatur

Bug#1081998: FTBFS with Python 3.13

2024-10-04 Thread Michael R. Crusoe
Control: tags -1 + pending This will be fixed with the upcoming mypy 1.12 release which is due in a week or so. Worse case we can turn off the mypyc compilation by NOT setting HATCH_BUILD_HOOKS_ENABLE=1 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#878875: [Pkg-javascript-devel] Bug#878875: Packaging twemoji

2024-10-04 Thread Michael R. Crusoe
On Thu, 28 Jan 2021 21:39:27 +0100 Felix Natter wrote: hello Jonas, Jonas Smedegaard writes: > Quoting Felix Natter (2021-01-24 16:12:39) >> >> Control: retitle -1 RFP: twemoji -- Open-sourced Twitter emoji images >> >> hello Debian developers, >> >> twemoji contains SVGs for twitter emojis as

Bug#1082295: r-bioc-dropletutils: autopkgtest failure on riscv64

2024-10-04 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/MarioniLab/DropletUtils/issues/113 I have asked upstream how they feel about the patch. OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1043532: Dropping big-endian (s390x) support for some r-bioc-* packages

2024-10-02 Thread Michael R. Crusoe
Hello all, Most of bioconductor 3.19 has migrated to testing, but some legitimate bugs shown by running the r-bioc-rhdf5 tests on s390x are holding up 20+ packages. I have communicated the issue to upstream, providing them with a reproducer, and helping them reproduce it on their CI. https://

Bug#1082721: [Debian-med-packaging] Bug#1082721: khmer: FTBFS: failing tests

2024-09-25 Thread Michael R. Crusoe
The "khmer" bioinformatics tool is abandoned upstream: https://github.com/dib-lab/khmer/issues/1928 Since no packages in Debian depend on this "khmer" tool, I propose to remove it. Unless there are objections and a fix. On 25/09/2024 00.30, Santiago Vila wrote: Package: src:khmer Version: 3.0

Bug#1082005: RM: r-cran-wgcna [armel armhf i386] -- ROM; 32-bit build-deps are no longer available

2024-09-17 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: r-cran-wg...@packages.debian.org, debia...@lists.debian.org, cru...@debian.org Control: affects -1 + src:r-cran-wgcna User: ftp.debian@packages.debian.org Usertags: remove Dear FTP Team, Due to some transitive build-deps no longer suppo

Bug#731435: warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations]

2024-09-14 Thread Michael R. Crusoe
Control: tags -1 - patch On Mon, 6 Apr 2020 11:07:35 +0200 Alberto Garcia wrote: On Mon, Apr 06, 2020 at 10:29:35AM +0200, Mathieu Malaterre wrote: > http://git.dcmtk.org/?p=dcmtk.git;a=commit;h=180d9b9 I have to say that I don't see how the changes to jccolor.c solve the problem ... the warn

Bug#1076843: transition: r-bioc-biocgenerics (r-api-bioc-3.19)

2024-09-11 Thread Michael R. Crusoe
On 11/09/2024 14.46, Graham Inggs wrote: Closing this bug now. Would it be useful to keep the tracker running a bit longer? Yes, please. Thanks again for your assistance! OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1061214: Please upgrade to llvm-toolchain-17

2024-09-11 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/numba/llvmlite/pull/1042 Upstream merged llvm-16 support (https://github.com/numba/llvmlite/pull/1067 ­— not yet released) and are now working on llvm-17 support. OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1081347: [Debian-med-packaging] Bug#1081347: vg: intent to file removal bug

2024-09-10 Thread Michael R. Crusoe
I'd like to upload a version to experimental first, and then it can be removed from unstable/testing. Is that okay? OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1081273: meryl: Meryl should be packaged separately from new upstream location

2024-09-10 Thread Michael R. Crusoe
Package: meryl Severity: wishlist X-Debbugs-Cc: debian-...@lists.debian.org There is a rewrite of meryl that is actively maintained at https://github.com/marbl/meryl We should make a new package using that upstream and then drop meryl from the kmer package. Bioconda switched to this new upstr

Bug#1076843: transition: r-bioc-biocgenerics (r-api-bioc-3.19)

2024-09-09 Thread Michael R. Crusoe
migrations, a second wave of about 70 migrations happened after autopkgtests were retried. These can already be seen on the tracker. On Mon, 9 Sept 2024 at 09:44, Michael R. Crusoe wrote: We have a question about https://qa.debian.org/excuses.php?package=r-bioc-tcgabiolinks ; the CI for this

Bug#1076843: transition: r-bioc-biocgenerics (r-api-bioc-3.19)

2024-09-09 Thread Michael R. Crusoe
Dear Graham, Thank you very much! We have a question about https://qa.debian.org/excuses.php?package=r-bioc-tcgabiolinks ; the CI for this package has never passed on ppc64el, so we are confused as to why this is now holding up migration. Likewise for https://qa.debian.org/excuses.php?packag

Bug#1076843: transition: r-bioc-biocgenerics (r-api-bioc-3.19)

2024-08-28 Thread Michael R. Crusoe
While we are waiting for the last of the 32-bit package removals to be finished, I need to flag an issue. https://qa.debian.org/excuses.php?package=r-bioc-biocgenerics All of these test failures are for architecture independent packages from testing that depend on architecture specific package

Bug#1079678: ITP: r-bioc-golubesets -- exprSets for golub leukemia data

2024-08-26 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-golubesets -- exprSets for golub leukemia data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-golubesets Version : 1.46.0 Upstream

Bug#1079201: RM: openfoam [armel armhf i386] -- ROM; MPI issues have broken the rarely used 32-bit builds

2024-08-21 Thread Michael R. Crusoe
--- Reason --- -- Checking reverse dependencies... No dependency problem found. --- Thank you! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079200: RM: r-bioc-biocparallel [armel, armhf, i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-21 Thread Michael R. Crusoe
.38.0 >=) r-bioc-shortread: r-bioc-biocparallel (1.38.0 >=) r-bioc-singler: r-bioc-biocparallel (1.38.0 >=) r-bioc-sva: r-bioc-biocparallel (1.38.0 >=) r-bioc-tfbstools: r-bioc-biocparallel (1.38.0 >=) Dependency problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079198: RM: r-bioc-genefilter [armel, armhf, i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-21 Thread Michael R. Crusoe
ncy problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079197: RM: mayavi2 sfepy [armel, armhf, i386] -- ROM; 32-bit builds no longer make sense for scientific packages

2024-08-21 Thread Michael R. Crusoe
ency problem found. $ apt-cache rdepends --no-recommends --no-suggests python3-sfepy python3-sfepy Reverse Depends: $ --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079196: RM: r-bioc-chemminer [armel, armhf, i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-21 Thread Michael R. Crusoe
-- Reason --- -- Checking reverse dependencies... # Broken Depends: r-bioc-eir: r-bioc-eir r-bioc-fmcsr: r-bioc-fmcsr # Broken Build-Depends: r-bioc-eir: r-bioc-chemminer (3.56.0 >=) r-bioc-fmcsr: r-bioc-chemminer Dependency problem found. --- Thanks! -- Michael R. Cr

Bug#1079195: RM: r-bioc-dnacopy [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-21 Thread Michael R. Crusoe
ends --no-recommends --no-suggests --no-breaks r-bioc-purecn r-bioc-purecn Reverse Depends: $ apt-cache rdepends --no-recommends --no-suggests --no-breaks r-cran-pscbs r-cran-pscbs Reverse Depends: --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079156: RM: r-bioc-graph [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
(1.82.0 >=) r-cran-ggm: r-bioc-graph Dependency problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079155: RM: r-bioc-limma [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
ma (3.60.4 >=) r-bioc-monocle: r-bioc-limma r-bioc-qusage: r-bioc-limma r-bioc-saturn: r-bioc-limma (3.60.4 >=) r-bioc-scran: r-bioc-limma (3.60.3 >=) r-bioc-sva: r-bioc-limma (3.60.3 >=) r-bioc-wrench: r-bioc-limma (3.60.4 >=) Dependency problem found. --- Thanks! -- Michael R. C

Bug#1079154: RM: r-bioc-lpsymphony [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
encies... # Broken Build-Depends: r-bioc-ihw: r-bioc-lpsymphony (1.32.0 >=) Dependency problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079151: RM: r-bioc-metapod [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
dependencies... # Broken Depends: r-bioc-scran: r-bioc-scran # Broken Build-Depends: r-bioc-scran: r-bioc-metapod (1.12.0 >=) Dependency problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079149: RM: r-bioc-rhdf5lib [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
s # Broken Build-Depends: r-bioc-alabaster.base: r-bioc-rhdf5lib (1.26.0 >=) r-bioc-dropletutils: r-bioc-rhdf5lib (1.26.0 >=) r-bioc-hdf5array: r-bioc-rhdf5lib (1.26.0 >=) r-bioc-rhdf5: r-bioc-rhdf5lib (1.26.0 >=) r-bioc-rhdf5filters: r-bioc-rhdf5lib (1.26.0 >=) Dependency pr

Bug#1079148: RM: r-bioc-affyio [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
yio (1.74.0 >=) r-bioc-oligo: r-bioc-affyio (1.74.0 >=) r-bioc-oligoclasses: r-bioc-affyio (1.74.0 >=) Dependency problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079147: RM: r-bioc-biocneighbors [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
1.22.0 >=) r-bioc-singler: r-bioc-biocneighbors (1.22.0 >=) Dependency problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079146: RM: r-bioc-edger [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
r-bioc-dropletutils: r-bioc-edger (4.2.1 >=) r-bioc-htsfilter: r-bioc-edger r-bioc-isoformswitchanalyzer: r-bioc-edger (4.2.0 >=) r-bioc-scran: r-bioc-edger (4.2.0 >=) r-bioc-sva: r-bioc-edger (4.2.0 >=) Dependency problem found. --- Thanks! -- Michael R. Crusoe OpenPGP_si

Bug#1079145: RM: r-bioc-iranges [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
c-variantannotation: r-bioc-iranges (2.38.1 >=) r-bioc-xvector: r-bioc-iranges (2.38.1 >=) r-cran-alakazam: r-bioc-iranges r-other-ascat: r-bioc-iranges Dependency problem found. -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079137: RM: r-bioc-multtest [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
xp0 | experimental | source, all -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079136: RM: r-bioc-pcamethods [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
-- Reason --- -- Checking reverse dependencies... # Broken Depends: r-bioc-destiny: r-bioc-destiny # Broken Build-Depends: r-bioc-destiny: r-bioc-pcamethods r-cran-multidimbio: r-bioc-pcamethods (1.76.0 >=) Dependency problem found. -- Michael R. Crusoe OpenPGP_signature.asc

Bug#1079135: RM: r-bioc-rhdf5filters [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
gt;=) Dependency problem found. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079134: RM: r-bioc-dirichletmultinomial [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
/lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079131: RM: r-bioc-rhdf5 [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
-bioc-rhdf5 (2.48.0 >=) r-other-wasabi: r-bioc-rhdf5 Dependency problem found. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe O

Bug#1079129: RM: r-bioc-s4arrays [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
rg/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079128: RM: r-bioc-xvector [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
.0 >=) r-bioc-tfbstools: r-bioc-xvector (0.44.0 >=) r-bioc-variantannotation: r-bioc-xvector (0.44.0 >=) Dependency problem found. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://li

Bug#1079127: RM: r-bioc-biostrings [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
ioc-biostrings (2.72.1 >=) r-bioc-tximeta: r-bioc-biostrings (2.72.1 >=) r-bioc-variantannotation: r-bioc-biostrings (2.72.1 >=) r-cran-alakazam: r-bioc-biostrings Dependency problem found. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian

Bug#1079126: RM: r-bioc-genomicranges [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
;=) r-other-ascat: r-bioc-genomicranges Dependency problem found. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079122: RM: r-bioc-sparsearray [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079121: RM: r-bioc-delayedarray [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079117: RM: r-bioc-beachmat [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-20 Thread Michael R. Crusoe
.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079063: RM: r-bioc-hdf5array [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-19 Thread Michael R. Crusoe
nks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079062: RM: r-bioc-deseq2 [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-19 Thread Michael R. Crusoe
t;=) r-bioc-htsfilter: r-bioc-deseq2 r-bioc-rgsepd: r-bioc-deseq2 (1.44.0 >=) Dependency problem found. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.h

Bug#1079061: RM: r-bioc-gosemsim [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-19 Thread Michael R. Crusoe
tml https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1079060: RM: r-bioc-biocsingular [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-19 Thread Michael R. Crusoe
-biocsingular (1.20.0 >=) r-bioc-singler: r-bioc-biocsingular (1.20.0 >=) Dependency problem found. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Mic

Bug#1079056: RM: r-bioc-scuttle [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-19 Thread Michael R. Crusoe
d-depends in unstable/non-free-firmware: No reverse build-depends found for r-bioc-scater. --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Mi

Bug#1079057: RM: r-bioc-bluster [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-19 Thread Michael R. Crusoe
2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1076843: transition: r-bioc-biocgenerics (r-api-bioc-3.19)

2024-08-19 Thread Michael R. Crusoe
1076843 by 1078969 Control: block 1076843 by 1078972 Control: block 1076843 by 1078974 Control: block 1076843 by 1078985 Control: block 1076843 by 1078986 On 16/08/2024 11.49, Graham Inggs wrote: Control: tags -1 confirmed Hi Michael On Fri, 16 Aug 2024 at 06:38, Michael R. Crusoe wrote: Thank you

Bug#1078986: RM: r-bioc-sva [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
s://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078985: RM: r-bioc-singler [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078974: RM: r-bioc-affxparser [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078972: RM: r-bioc-oligo [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
sg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078969: RM: r-bioc-sparsematrixstats [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078967: RM: r-bioc-affy [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078966: RM: r-bioc-rbgl [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
ioc-structuralvariantannotation --- Thanks! [0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078965: RM: r-bioc-gsva [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
an.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078964: RM: r-bioc-makecdfenv [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1078963: RM: r-bioc-deseq [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

2024-08-18 Thread Michael R. Crusoe
an.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

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