[deal.II] some publications based on deal.II

Praveen Chandrashekar and Markus Zenk, "Well-balanced nodal discontinuous Galerkin method for Euler equations with gravity", J. Sci. Comp., Vol. 71, Issue 3, pp. 1062-1093, June 2017. http://link.springer.com/article/10.1007/s10915-016-0339-x Juan Pablo Gallego-Valencia, Christian Klingenberg,

Re: [deal.II] Building DealII fails at step-60. P4est. Linking error

On 10/10/2018 03:35 AM, Oleg Kmechak wrote: > Triend to resolve this in different ways: > >  - Installing libhdf5-dev and/or libnetcdf-dev, (not sure but probably > libphdf5-dev, libhdf5-mpi-dev and/or libpnetcdf-dev tried too). >  - Building parallel version of *hdf5* >

Re: [deal.II] Compilation problems on RHEL7

> I believe that you can *force* the cmake script to use the bundled > version of TBB over the one on your system. I forgot the flag, but you > may be able to find it in the doc/readme.html file. Correct, -DDEAL_II_FORCE_BUNDLED_THREADS=TRUE does the trick. Best, Matthias [1] https://deal

Re: [deal.II] Compilation problems on RHEL7

On 10/10/2018 06:52 AM, Hans Peter Verne wrote: > > /usr/include/tbb/concurrent_vector.h: In member function > ‘tbb::concurrent_vector::iterator tbb::concurrent_vector A>::grow_by(tbb::concurrent_vector::size_type)’: > /usr/include/tbb/concurrent_vector.h:667:38: error: operands to ?: have > dif

Re: [deal.II] Re: Boost serialization check fails for boost 1.68.0

On 10/10/2018 07:34 AM, 'Maxi Miller' via deal.II User Group wrote: > Hmm, difficult to apply here, I installed boost via the package manager, > thus I am not sure how I can apply the patch there... You don't have to. If the deal.II cmake mechanism detects that the boost you have on your system

Re: [deal.II] Re: Compilation problems on RHEL7

Hans, Everything looks fine. I have a question, when you configured deal.II did you load a Trilinos module but then when you compiled Trilinos was not loaded? The other thing to try is to update cmake. cmake 2.8.12 is very old maybe that's the cause of the problem. Bruno Le mer. 10 oct. 2018 à 1

[deal.II] Re: Compilation problems on RHEL7

On Wednesday, 10 October 2018 15:28:42 UTC+2, Bruno Turcksin wrote: > > Hans, > > Can you send the detailed.log file that was generated when you configured > deal.II. > > Sure! Attached. Regards, Hans Peter Verne IT staff - Dept. of Geosciences University of Oslo -- The deal.II project is l

[deal.II] Re: Boost serialization check fails for boost 1.68.0

Hmm, difficult to apply here, I installed boost via the package manager, thus I am not sure how I can apply the patch there... Am Mittwoch, 10. Oktober 2018 14:18:12 UTC+2 schrieb Bruno Turcksin: > > Hi, > > On Wednesday, October 10, 2018 at 4:03:01 AM UTC-4, Maxi Miller wrote: >> >> >> Is that a

[deal.II] Re: Compilation problems on RHEL7

Hans, Can you send the detailed.log file that was generated when you configured deal.II. Best, Bruno On Wednesday, October 10, 2018 at 8:52:03 AM UTC-4, Hans Peter Verne wrote: > > I have compiled deal.II 8.4.1 earlier, but version 9.0.0 gets me in a > pickle. > > My system is RedHat Enterpri

[deal.II] Compilation problems on RHEL7

I have compiled deal.II 8.4.1 earlier, but version 9.0.0 gets me in a pickle. My system is RedHat Enterprise Linux, version 7.5 I think I meet all the requirements: $ cmake --version cmake version 2.8.12.2 $ make --version GNU Make 3.82 $ gcc --version gcc (GCC) 7.2.0 I unpack the archive, c

[deal.II] Re: Boost serialization check fails for boost 1.68.0

Hi, On Wednesday, October 10, 2018 at 4:03:01 AM UTC-4, Maxi Miller wrote: > > > Is that a general problem, or a problem just for my system? Or is that a > boost-related error, and thus not related to deal.II? > It's a problem with boost 1.68.0. See https://github.com/boostorg/serialization/pull

Re: [deal.II] Building DealII fails at step-60. P4est. Linking error

Thanks for watching out, I already chanched setup of whole system and can't check how would behave *make quick_test* in this situation. Also I missed, while clonning p4est from git, that it has submodule "cl" and forget to call git submodule init & git submodule update. DealII setup and it de

[deal.II] Boost serialization check fails for boost 1.68.0

When trying to configure deal.II with the system version of Boost (1.68.0) I get the error "Performing Test BOOST_SERIALIZATION_USABLE - Failed". Thus I tried running the test separately, which resulted in a memory access error (double free). I used the following code from the test folder: