Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Lev Karatun
Hi Bruno, that's what I was doing... Best regards, Lev Karatun. 2017-04-26 19:48 GMT-04:00 Bruno Turcksin : > 2017-04-26 18:10 GMT-04:00 Lev Karatun : > > all tests passed. > OK Then can you try to configure deal in a new empty directory. > > Best > > Bruno > > -- > The deal.II project is locat

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Bruno Turcksin
2017-04-26 18:10 GMT-04:00 Lev Karatun : > all tests passed. OK Then can you try to configure deal in a new empty directory. Best Bruno -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You receiv

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Lev Karatun
Hi Bruno, all tests passed. Best regards, Lev Karatun. 2017-04-26 17:16 GMT-04:00 Bruno Turcksin : > 2017-04-26 17:10 GMT-04:00 Lev Karatun : > > [lev@titan FAST]$ make tests > > make: *** No rule to make target `tests'. Stop." > Sorry it was `make check` > > Bruno > > -- > The deal.II project

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Bruno Turcksin
2017-04-26 17:10 GMT-04:00 Lev Karatun : > [lev@titan FAST]$ make tests > make: *** No rule to make target `tests'. Stop." Sorry it was `make check` Bruno -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Lev Karatun
Doesn't work =( "[lev@titan FAST]$ pwd /home/lev/distrib/p4est-build/FAST [lev@titan FAST]$ l total 1M -rw-rw-r-- 1 lev lev 1M Apr 26 11:35 config.log -rw-rw-r-- 1 lev lev 1M Apr 26 11:35 config.output -rw-rw-r-- 1 lev lev 1M Apr 26 11:34 _configs.sed -rwxrwxr-x 1 lev lev 1M Apr 26 11:34 confi

Re: [deal.II] Refining a hyper_ball with a spherical_manifold produces nan values

2017-04-26 Thread Wolfgang Bangerth
On 04/26/2017 02:35 AM, Alexander Gary Zimmerman wrote: As for the documentation: I indeed missed that detail from SphericalManifold; but*there is a very misleading statement in the hyper_ball documentation:*"You should attach a SphericalManifold

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Bruno Turcksin
Very strange. Can you go in the build directory of p4est (DEBUG or FAST it doesn't matter) and run the tests (make tests). Do all the tests pass? Bruno 2017-04-26 11:43 GMT-04:00 Lev Karatun : > Hi Bruno, > > I don't remember installing zlib, maybe it was installed with the OS? Or > maybe it was

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Lev Karatun
Hi Bruno, I don't remember installing zlib, maybe it was installed with the OS? Or maybe it was part of some other packages I installed in the past? I'm not sure. Again, I installed p4est on this machine 2 years ago and haven't done anything to it, that's why it seems strange it's not accepted by

[deal.II] Re: How to provide the VectorMemory > for the class SchurMatrix?

2017-04-26 Thread Jesse
Dear Jean-Paul, Thank you very much for your help. This is exactly what I needed. My compiler support c++11 features, I will also try the new schur_complement operator. With best wishes, Jesse 在 2017年4月26日星期三 UTC+2下午4:22:26,Jean-Paul Pelteret写道: > > Dear Jesse, > > You can probably just provide

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Bruno Turcksin
Lev, 2017-04-26 10:16 GMT-04:00 Lev Karatun : > it's installed too =( > > "Package zlib-devel-1.2.3-29.el6.x86_64 already installed and latest version > Nothing to do" Maybe it's not in your LD_LIBRARY_PATH? How did you install it? Best Bruno -- The deal.II project is located at http://www.de

[deal.II] Re: How to provide the VectorMemory > for the class SchurMatrix?

2017-04-26 Thread Jean-Paul Pelteret
Dear Jesse, You can probably just provide an instance of the GrowingVectorMemory class templated on BlockVector< double >. So this would look something like: GrowingVectorMemory< BlockVector > memory; const SchurMatrix

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Lev Karatun
Hi Timo, it's installed too =( "Package zlib-devel-1.2.3-29.el6.x86_64 already installed and latest version Nothing to do" Best regards, Lev Karatun. 2017-04-26 10:09 GMT-04:00 Timo Heister : > You need the "dev" package too. On my machine it is called zlib1g-dev > > On Wed, Apr 26, 2017 at 10

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Timo Heister
You need the "dev" package too. On my machine it is called zlib1g-dev On Wed, Apr 26, 2017 at 10:03 AM, Lev Karatun wrote: > Hi Bruno, > > I reinstalled p4est, but zlib didn't get picked up unfortunately. I made > sure it is installed on the machine: > "Installed Packages > Name: zlib > A

Re: [deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Lev Karatun
Hi Bruno, I reinstalled p4est, but zlib didn't get picked up unfortunately. I made sure it is installed on the machine: "Installed Packages Name: zlib Arch: x86_64 Version : 1.2.3 Release : 29.el6 Size: 149 k Repo: installed >From repo : anaconda-CentOS-20

[deal.II] How to provide the VectorMemory > for the class SchurMatrix?

2017-04-26 Thread Jesse
Deal all, I'm using the mixed finite element to solve a Cahn-HIlliard type equation, after discretization I obtain a block matrix system. I plan to use the class SchurMatrix in deal.ii to obtain the Schur Complement. The block matrix system is * / \ / \ / \ * | A Dt | | u | - | f | * | -B C |

[deal.II] Re: p4est has to be configured with enabled zlib support

2017-04-26 Thread Bruno Turcksin
Lev, you need to make sure that zlib is installed on your machine and then reinstall p4est. zlib should be picked up automatically. Best, Bruno On Tuesday, April 25, 2017 at 7:06:21 PM UTC-4, Lev Karatun wrote: > > Hi everyone, > > I was updating dealII to the latest version and received the e

Re: [deal.II] Refining a hyper_ball with a spherical_manifold produces nan values

2017-04-26 Thread Alexander Gary Zimmerman
Thanks, Luca. The behavior is obvious to me now. As for the documentation: I indeed missed that detail from SphericalManifold; but* there is a very misleading statement in the hyper_ball documentation:* "You should attach a SphericalManifold

Re: [deal.II] Refining a hyper_ball with a spherical_manifold produces nan values

2017-04-26 Thread luca.heltai
This is actually not a bug. A spherical manifold is undefined on the center of the sphere/ball. You cannot attach set_all_manifold_ids of the spherical manifold and attach a spherical manifold to it, since the central cell (the one where the cell->center() coincides with the ball center) would n