On 22 January 2016 at 15:13, Achim Gratz wrote:
> What I mean is this: are all the Windows versions that Cygwin supports
> looking for the hosts and other files in
>
> %windir%\system32\drivers\etc
>
> or are there some versions, situations or configurations where it looks for
> those files in
On 27/01/2016 05:24, Robert May wrote:
Marco
what I have done is in makefile
line 26CFLAGS = -g -Wall -O2 -std=gnu99
## added -std=gnu99 above
line 66
ALL_LDFLAGS = $(HTSLIB_LDFLAGS) $(LDFLAGS)
## remove -rdynamic from ALL_LDFLAGS above
and this is the result of the next make run
Robert@
On 27/01/2016 05:53, Robert May wrote:
I have had another look at Makefile and I changed c to gnu in this line 40
-std=gnu99
CFLAGS = -g -Wall -Wc++-compat -O2 -std=gnu99
I had also removed -rdynamic in line 185 so it now reads
$(CC) $(LDFLAGS) -o $@ $(OBJS) $(HTSLIB) -lpthread -lz -lm -
On 1/27/2016 15:20, Achim Gratz wrote:
> Sam Habiel gmail.com> writes:
>> That wasn't me; but I still observed the bug and did the same thing to
>> fix it. How do I report this to the maintainer of gcc?
>
> Not still, again (since the provision of the gcc-5.3.0 test version).
>
> For the record,
JonY <10walls gmail.com> writes:
> Yaakov, requesting cygport feature to inject and remove dependencies,
> without requiring the dependencies to be screened manually.
The feature to inject dependencies is already there, via
{,PKG_}REQUIRES="..." lines in the cygport file.
BTW, for x86/i686 gcc-c
MarcoYes got samtools configure make install
samtools
= samtools index appears
What I did
line 26 added -std=gnu99
line 31 added -D_CURSES_LIB=1 -Dexpl=exp -Dlogl=logline 87 removed -rdynamic
am about to try the program out
Bob
Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve
On 27/01/2016 07:45, Robert May wrote:
cyg Simple
OK replaced the two files config.guess and config.sub with a 2016 timestamp and
ran make again.
like samtools it has a couple of warning for terms like
But it does not get the job done.
the problem area seems to be in this area of make
ppuzz
On 1/27/2016 17:46, Achim Gratz wrote:
> JonY <10walls gmail.com> writes:
>> Yaakov, requesting cygport feature to inject and remove dependencies,
>> without requiring the dependencies to be screened manually.
>
> The feature to inject dependencies is already there, via
> {,PKG_}REQUIRES="..." li
David Lee gmail.com> writes:
> (1) A bug that the base-files script tries to link to files in
> C:\Windows\SysWow64\Drivers\Etc directory (should have been
> C:\Windows\System32\Drivers\Etc).
That was a regression in cygpath, which has since been fixed.
> (2) Your concern of whether the
Hi!
When I use "git clone foo bar" on a Linux host, it works as expected.
git clone foo bar
Cloning into 'bar'...
done.
When I use the same command on my Cygwin 64 installation, this used
to work, but does not work any more. I can fetch and otherwise use
Git in existing repos all right (have
On 1/27/2016 7:41 AM, Rainer Blome wrote:
Hi!
When I use "git clone foo bar" on a Linux host, it works as expected.
git clone foo bar
Cloning into 'bar'...
done.
When I use the same command on my Cygwin 64 installation, this used
to work, but does not work any more. I can fetch and othe
On Jan 27 08:30, Ken Brown wrote:
> On 1/27/2016 7:41 AM, Rainer Blome wrote:
> >Hi!
> >
> >When I use "git clone foo bar" on a Linux host, it works as expected.
> >
> > git clone foo bar
> > Cloning into 'bar'...
> > done.
> >
> >When I use the same command on my Cygwin 64 installation, this us
Brendan,
Is your Windows server running Windows 10? I had a similar issue and
installing Openssh 7.1p1-1 solved this issue.
Openssh 7.1p2-1 had no issues with Windows 7 or XP, but I could not get it
to work with Windows 10. I don't have access to a Windows 8 environment so I
can't say if it wi
JonY writes:
> vtv was removed because there is no equivalent for 4.x, release notes
> coming soon.
Jon Turney had already provided an empty libvtv0 package for those
versions so the dependecies for gcc-4 and gcc-5 could be merged. We
were just missing the fact that libcloog-isl4 and the dependen
On 12/01/2016 20:12, Jon Turney wrote:
The following packages have been updated in the Cygwin distribution:
*** xorg-server-*1.18.0-2
These packages contain XWin and the other X.Org X11 servers.
These packages are currently available as a test release, and will be
made stable in approximately
On 21/01/2016 09:10, Tim Chick wrote:
Jon TURNEY wrote
On 14/01/2016 16:02, Tim Chick wrote:
Jon TURNEY wrote
I built a 32-bit version as well, but there was a slight delay with that
getting moved into the release. It should be mirroring out now, though.
Hi Jon,
I've just tried the 7.10.1
I'm running windows server 2008 R2 so basically windows 7.
Brendan,
Is your Windows server running Windows 10? I had a similar issue and installing
Openssh 7.1p1-1 solved this issue.
Openssh 7.1p2-1 had no issues with Windows 7 or XP, but I could not get it to
work with Windows 10. I don't ha
It's running Server 2008 RC2 so basically windows 7.
Brendan Maloney
Texas A&M University at Galveston
IS - Programmer Analyst
(409)741-7174
Please provide feedback on our services.
-Original Message-
From: cygwin-ow...@cygwin.com [mailto:cygwin-ow...@cygwin.com] On Behalf Of Bob
Coho
S
Ok I fixed the problem with not being able to connect from my mac systems. I
had to change a bunch of permissions that I found in a different setup guide
and it started working. I can use ssh and sftp from command line as well as
Filezilla although it doesn't seem to recognize my default path
I'm using ssh--copy-id which should do the same thing but I keep getting a
"permission denied" error after I enter my password. I read up on this a
little and did a chmod 0700 /home/user/.ssh to make sure permissions on that
folder were right but it still didn't work. Would doing it using the
On Tue, Jan 26, 2016 at 11:10 PM, Robert May wrote:
>
> I still can.t make sense of it
> below is the contents of makefile
>
> the end of running make is still the same
> $ make
> makefile:1: *** missing separator. Stop.
>
I didn't get that line but I got several others. I extracted a
makefile f
On 1/28/2016 00:33, Achim Gratz wrote:
> JonY writes:
>> vtv was removed because there is no equivalent for 4.x, release notes
>> coming soon.
>
> Jon Turney had already provided an empty libvtv0 package for those
> versions so the dependecies for gcc-4 and gcc-5 could be merged. We
> were just m
Or maybe chmod is broken, like it is on my machine:
$ touch x
$ chmod 777 x
chmod: changing permissions of ‘x’: Invalid argument
> Sent: Wednesday, January 27, 2016 at 9:53 AM
> From: "Corinna Vinschen"
> To: cygwin@cygwin.com
> Subject: Re: git clone fails with: error: chmod on config.lock fail
The following packages have been uploaded to the Cygwin distribution:
* tzcode-2016a-1
The Time Zone Database (often called tz or zoneinfo) contains code and
data that represent the history of local time for many representative
locations around the globe. It is updated periodically to reflect
Sorry I missed that - will try the new version today or tomorrow.
On 27 January 2016 at 19:52, Achim Gratz wrote:
> David Lee gmail.com> writes:
>> (1) A bug that the base-files script tries to link to files in
>> C:\Windows\SysWow64\Drivers\Etc directory (should have been
>> C:\Windows\
The following packages have been uploaded to the Cygwin distribution:
* curl-7.47.0-1
* libcurl4-7.47.0-1
* libcurl-devel-7.47.0-1
* libcurl-doc-7.47.0-1
curl is a command line tool and library for transferring files
with URL syntax, supporting FTP, FTPS, HTTP, HTTPS, SCP, SFTP, TFTP,
TELNET, DIC
The following packages have been uploaded to the Cygwin distribution:
* krb5-workstation-1.13.2-4
* krb5-server-1.13.2-4
* krb5-server-ldap-1.13.2-4
* krb5-pkinit-1.13.2-4
* krb5-k5tls-1.13.2-4
* krb5-samples-1.13.2-4
* krb5-doc-1.13.2-4
* libgssapi_krb5_2-1.13.2-4
* libgssrpc4-1.13.2-4
* libk5cry
The following packages have been uploaded to the Cygwin distribution:
* imlib2-1.4.7-1
* libImlib2_1-1.4.7-1
* libImlib2-devel-1.4.7-1
This is the Imlib 2 library - a library that does image file loading and
saving as well as rendering, manipulation, arbitrary polygon support,
etc. It does ALL
The following package has been added to the Cygwin distribution:
* meld-1.8.6-1
Meld is a GUI tool for analyzing two- and three-way diffs between files or
directories, as well as several version control systems.
--
Yaakov
--
Problem reports: http://cygwin.com/problems.html
FAQ:
The following packages have been uploaded to the Cygwin distribution:
* php-5.6.17-1
* php-devel-5.6.17-1
* httpd-mod_php5-5.6.17-1
* php-bcmath-5.6.17-1
* php-bz2-5.6.17-1
* php-calendar-5.6.17-1
* php-ctype-5.6.17-1
* php-curl-5.6.17-1
* php-dba-5.6.17-1
* php-enchant-5.6.17-1
* php-exif-5.6.17-
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