On Mon, Jan 25, 2016 at 09:30:29PM +, David Stacey wrote:
> On 25/01/16 21:00, Robert May wrote:
> >many warnings are given in the following text - see end for error message
> >
> >echo '#define BCFTOOLS_VERSION "1.3"'> version.h
> >gcc -g -Wall -Wc++-compat -O2 -std=c99 -I. -Ihtslib-1.3
> >-
Marco
The choice of using usr/local/bin was the way to go according to the INSTALL
instructions with most of the programs.
some use ./confire - make - make install
some use make make install
I think one used just make and one used Build.
If I remember the wording correc
On 25/01/16 21:00, Robert May wrote:
many warnings are given in the following text - see end for error message
echo '#define BCFTOOLS_VERSION "1.3"'> version.h
gcc -g -Wall -Wc++-compat -O2 -std=c99 -I. -Ihtslib-1.3
-DPLUGINPATH=\"/usr/local/libexec/bcftools\" -c -o main.o main.c
gcc -g -Wall
Robert@DESKTOP-14EL82S /usr/local/bin/tree-puzzle-5.3.rc16-windows
$ ./configure
checking build system type... ./config.guess: unable to guess system type
This script, last modified 2004-08-11, has failed to recognize
the operating system you are using. It is advised that you
download the most up
obert@DESKTOP-14EL82S /cygdrive/c/cygwin64/usr/local/bin/stampy-1.0.28
$ make
makefile:1: *** missing separator. Stop.
Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname
and ISOGG YTree
--
Problem reports: http://cygw
Robert@DESKTOP-14EL82S /usr/local/bin/Platypus_0.8.1
$ ./buildPlatypus.sh
Building Platypus
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running
Robert@DESKTOP-14EL82S /usr/local/bin/bwa-0.7.12
$ ./configure
-bash: ./configure: No such file or directory
Robert@DESKTOP-14EL82S /usr/local/bin/bwa-0.7.12
$ make
make: Nothing to be done for 'all'.
Robert@DESKTOP-14EL82S /usr/local/bin/bwa-0.7.12
$ make install
make: *** No rule to make targe
error running Make after installing update 2.4.1.1 to Cygwin64
Robert@DESKTOP-14EL82S /usr/local/bin/bcftools-1.3
$ make
many warnings are given in the following text - see end for error message
echo '#define BCFTOOLS_VERSION "1.3"'> version.h
gcc -g -Wall -Wc++-compat -O2 -std=c99 -I. -Ihtsl
htslib configure - make - make install ok
samtools configure ok
then when it came ro running Main samtools i get
Robert@DESKTOP-14EL82S /usr/local/bin/samtools-1.3
$ make
make: *** No rule to make target 'kfunc.c', needed by 'kfunc.o'. Stop.
Bob May
DNA Projects I2b L415, I2c L596 HG, Sprig
Instalation error
-/unknown package
x3270.sh exit code 1
this is an issue completely unrelated to the rest of your mail
This he error message that was displasyed at the end of the install of 2.4.1.1
I have not idea of its importance to cygwin or any other programs I am
installing
So I guess th
On Jan 25 11:02, Achim Gratz wrote:
> Corinna Vinschen cygwin.com> writes:
> > In the noacl case, Cygwin tries to find out if files are scripts. It
> > opens the file and checks the first two bytes in the file for a shebang
> > (and other stuff).
>
> acl > time ls --file-type > /dev/null
> 0.015
Hi Larry,
My apologies - I now see the email that indicates the package was updated to
address this specific issue!
Problem's solved.
Thanks,
Maarten
> Subject: Re: Error installing/updating Cygwin on Windows 10
> To: cygwin@cygwin.com
> From: reply-to
Corinna Vinschen cygwin.com> writes:
> In the noacl case, Cygwin tries to find out if files are scripts. It
> opens the file and checks the first two bytes in the file for a shebang
> (and other stuff).
acl > time ls --file-type > /dev/null
0.015u 0.015s 0:00.42 4.7% 0+0k 0+0io 2473pf+0w
ac
On 25/01/2016 00:39, Robert May wrote:
Hi Robert,
The mail subject is not very useful
Instalation error
-/unknown package
x3270.sh exit code 1
this is an issue completely unrelated to the rest of your mail
htslib configure - make - make install ok
samtools configure ok
Robert@DESKTOP-14E
I just want to add an observation and stay out of this
conversation otherwise: ls -F is comparably slow on a
network drive here but as noted by someone else in this
thread ls --file-type is fast. However, the combination
ls --file-type --color is as slow as ls -F here. Maybe
a hint for you to fin
On Jan 24 22:06, Ken Brown wrote:
> On 1/24/2016 5:57 PM, Corinna Vinschen wrote:
> >Does it fail to create ACLs? Do the created ACLs make sense? If you
> >have a file created with Cygwin >= 2.4.0 and change the file content
> >with Emacs, does the ACL change or stay the same? Stuff like that.
>
On Jan 25 07:41, Thorsten Kampe wrote:
> * Corinna Vinschen (Sun, 24 Jan 2016 12:56:54 +0100)
> > Please give this new POSIX.1e ACL implementation a test. If you
> > have
> > a project or maintain a package utilizing ACLs, please make sure that
> > your project picks up the new POSIX.1e API and th
On Jan 25 08:04, Markus Hansmair wrote:
> Hello,
>
> I think there is a word missing in
>
> https://cygwin.com/cygwin-ug-net/using.html#usertemp
>
> > In contrast to /tmp/, it is by default a different folder for every
> > Windows.
>
> should be (IMHO)
>
> > In contrast to /tmp/, it is by defa
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