Re: [ccp4bb] configuration or install issue with tk

2009-12-14 Thread Stuart Endo-Streeter
g is that I can launch ccp4i just fine as a > regular user, but then of course I get the message about the > first time ccp4i has been run and the need to configure it, > which requires administrator level access. > > > Anyone have any ideas? > > >

[ccp4bb] anomalous phase extension to native data

2010-03-07 Thread Stuart Endo-Streeter
o the 1.8 native data? Thanks, Stuart Endo-Streeter

Re: [ccp4bb] Graphics for notebook

2010-09-19 Thread Stuart Endo-Streeter
tuart ___ Stuart Endo-Streeter, Ph.D Dept. Computer Science 3245 French Family Science Center Duke University Medical Center 919-660-4068 stuart.endostree...@duke.edu -Original Message- From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of Sent: Sunday, September 19, 20

Re: [ccp4bb] .cv to .mtz conversion

2010-09-28 Thread Stuart Endo-Streeter
; Free-R flags intact. > > If you aren't to the model building stage yet, this won't work however. -- ______ Stuart Endo-Streeter, Ph.D Dept. Computer Science 3245 French Family Science Center Duke University Durham, NC 27710 919-660-4018 stuart.endostree...@duke.edu

Re: [ccp4bb] need help for viewing hardware stereo

2007-07-16 Thread Stuart Endo-Streeter
Are you using the NVidia drivers and if so, how have you configured your xorg.conf file? It may be a hardware or a configuration issue. A fellow lab here was having a problem with no OpenGL programs running properly and odd resolution issues after installing the NVidia drivers, turned out the

Re: [ccp4bb] Problem converting CNS cv file to mtz using f2mtz

2007-07-27 Thread Stuart Endo-Streeter
ection message" when the format was not set correctly. Stuart Endo-Streeter On Friday 27 July 2007 20:29, Ryan Watkins wrote: > Hello Colleagues, > > I'm trying to convert a cns cv file to a CCP4 mtz file. I have only > Fobs and SigFs. Unfortunately, I cannot get f2mtz to

Re: [ccp4bb] Seeking Linux experts' adivice

2007-09-19 Thread Stuart Endo-Streeter
Sounds like an OpenGL graphics driver misconfiguration to me. What is the graphics card and driver, and like Kay asked, how was the driver configured? A friend's computer at one of the lab's here had similar issues, turns out the NVidia driver was severly misconfigured. Fixed following the re

Re: [ccp4bb] Archiving onto DVD with RH linux

2007-09-19 Thread Stuart Endo-Streeter
Acording to the product specs from NEC that drive model is only designed to write up to 8X speed, it was never intended to write any faster. Nothing wrong with the drive, it just is not designed to burn any faster. For burning 16X discs at 8X speed, maybe a firmware update, or maybe it is a s

Re: [ccp4bb] How to generate two molecules of proteins and two chains of RNA in CNS 1.2

2008-05-09 Thread Stuart Endo-Streeter
Does the log from generate show it reading in both RNA chains and do you have enough loading statements? Stuart Endo-Streeter On Thursday 08 May 2008 22:38, Sun Tang wrote: > Dear All, > > When I used CNS 1.2 to generate the pdb file for two molecules of > proteins and two chains

Re: [ccp4bb] How to generate two molecules of proteins and two chains of RNA in CNS 1.2

2008-05-09 Thread Stuart Endo-Streeter
te.inp > generate.log and attaching both. Stuart Endo-Streeter On Friday 09 May 2008 10:49, you wrote: > Hi Stuart, > > Thank you very much for your reply. Here are parts of the input files and > input pdb files for protein and RNA. > > {===

Re: [ccp4bb] 27.5% R/29% Rfree for 1.75A structure (details updated)

2008-07-29 Thread Stuart Endo-Streeter
How are you deciding your resolution limit? I/sigma, Rmrgd-F, Rmeas, etc. etc.? We recently had a person in a fellow lab that couldn't figure why their R/Rfree was mid- to high-twenties for their 1.8 angstrom structure. Turned out the data stopped at 2.1. Stuart On Tuesday 29 July 2008 17:3

[ccp4bb] install issue on win vista - where is the ccp4i executable?

2009-07-27 Thread Stuart Endo-Streeter
lowing the instructions ccp4 is not working. Thanks for any help, Stuart Endo-Streeter __ Stuart T. Endo-Streeter Structural Biology and Biophysics Dept. Biochemistry LSRC C266 Duke University 919-681-1668 stuart.endostree...@duke.edu

Re: [ccp4bb] install issue on win vista - where is the ccp4i executable?

2009-07-27 Thread Stuart Endo-Streeter
%* in its entirety. Adding the entire line to the end of the shortcut gives the same error message. -Original Message- From: Dima Klenchin [mailto:klenc...@facstaff.wisc.edu] Sent: Monday, July 27, 2009 17:49 To: Stuart Endo-Streeter Subject: Re: [ccp4bb] install issue on win vista - whe

Re: [ccp4bb] install issue on win vista - where is the ccp4i executable? RESOLVED

2009-07-29 Thread Stuart Endo-Streeter
to why the single-user installer does not seem to work. Thanks to Dima Klenchin for suggestions and analysis of the error messages I got from the single-user install, Stuart Endo-Streeter On Monday 27 July 2009 20:00, you wrote: > >I get the following error when trying to run ccp4i.tc