Hi,
When I use the superpose program for SSM alignment with these two structures in
the following command line:
superpose 3BT1.pdb -s B 1OC0.pdb -s B superposed.pdb
The screen output reads:
PDB file 3BT1.pdb has been read in.
... 312 atoms selected using CID 'B'
PDB file 1OC0.pdb has been rea
In line with Kay's message this sounds like pdb2ins having being linked
statically with glibc.
AFAIK this can be problematic since glibc in reality can never be
completely statically linked. This may cause version conflicts if the
same version of glibc is not present on the users system. To avoi
Hi,
I would like to get mtz files via a script from the PDB_REDO server. The
documentation on http://www.cmbi.ru.nl/pdb_redo/downloads.html suggests
that the way to get the refined file, 1xhb_final.mtz, for the structure
1XHB is to run the command:
wget www.cmbi.ru.nl/pdb_redo/xh/1xhb/1xhb_f
Hi Jan,
There were some postings on the bulletin board about this in the latter
half of August last year. I also recall problems with the parallel
version of XDS but I think this was fixed by Microsoft in a patch that I
believe is included in the recent Creators update to Windows 10. Can't
ver
Hi James
If you have access to a Phenix installation then
phenix.find_alt_orig_sym_mate does what you want in one go. It tries to
position the two MR structures on the same origin and symmetry site like
Csymmatch. Besides computing a score value indicating the quality of the
match it also comp
