[ccp4bb] Protein crystallization images recognition service, https://xtal.online/

2020-03-14 Thread Michal Jamroz
Hi, Using MARCO database we trained DNN model for crystals image classification. It works a bit worse than MARCO (93% vs. 94%) but from other hand - it is easier to use by normal user (just need a web browser) and should be faster in general. Maybe somebody would be interested: https://xtal.onlin

[ccp4bb] KnotProt: a database of proteins with knots and slipknots

2014-09-23 Thread Michal Jamroz
Dear all, maybe you would be interested in our (slip)knotted protein structures database: http://knotprot.cent.uw.edu.pl/ If you have any improvements suggestions - let me know, please. It will be published in '15 NAR Database Issue (Jamroz et al. : KnotProt: a database of proteins with knots an

Re: [ccp4bb] "modeling" flexible ends on proteins

2014-10-24 Thread Michal Jamroz
Dnia 2014-10-22, o godz. 15:43:18 Tommi Kajander napisał(a): > Would anyone know a software to model (just with some kind of random > coil) the amino acid chain for the assumed flexible disorderd regions > between domains, or at one end of protein? just for illustrative > purposes. Hi Tommi, ch

Re: [ccp4bb] Analysis of NMR ensembles

2021-05-26 Thread Michal Jamroz
Dnia 2021-05-26, o godz. 16:04:59 Harry Powell - CCP4BB <193323b1e616-dmarc-requ...@jiscmail.ac.uk> napisał(a): > is there a tool available that will > give me some idea about the bits of the structure that do not vary > much (“rigid”) and the bits that are all over the place (“flexible”)? hav