Dear community,
Is it possible to conveniently search the PDB for specific geometrical shapes,
disregarding the input residues and specifically focusing on finding similar
topologies?
Thanks in advance
To unsubscribe fro
Dear Community,
There is this nice web server, ZipperDB
(https://services.mbi.ucla.edu/zipperdb/intro), that predicts the fibrillogenic
propensity of a given peptide segment. However, it seems to have been down for
a couple of months now. I have emailed them a few times but have not received a
Sorry. Kaspar. Misspelt your name.
From: Das, Abhinaba
Date: Wednesday, February 19, 2025 at 8:50 PM
To: Kaspar Hollenstein
Cc: CCP4BB@jiscmail.ac.uk
Subject: Re: [ccp4bb] [External] Re: [ccp4bb] Low atom inclusion score error
while depositing to PDB
Hi Kasper,
Yes, you are correct. There
unrealistic length. Somehow
the program thinks that the ideal value for the terminal C-N linkage should be
2.329A but it’s an amide bond.
Best,
Abhi
From: Kaspar Hollenstein
Date: Wednesday, February 19, 2025 at 7:47 PM
To: Das, Abhinaba
Cc: CCP4BB@jiscmail.ac.uk
Subject: Re: [ccp4bb] [External] Re
