[ccp4bb] Searching Sequence Motif

Hi all, I want to search NCBI/PDB for all E.coli proteins with a specific sequence motif. Is there any server/software in which I can search and display all the proteins in E.coli with this specific sequence motif? Suggestions are highly appreciated. Thanks! #

[ccp4bb] Coot RNA bases Mutate

Hi everyone, I am trying to mutate modified RNA nucleotide to standard nucleotide by coot using "Simple Mutate" button. But it is not working despite selecting the correct residue from the standard base list that pop up on clicking "simple mutate button". Does anyone and an idea what could be the

[ccp4bb] Making bonds

Hi everyone, In one my PDBs, I see that there is a linkage break in ribonucleotides. Specifically one of the phospodiester bond seems to be broken and thus O3' needs to be bonded to P atom of next nucleotide. What is the easiest way to do this in coot ? Or any other software? I tried "make link" o

[ccp4bb] mRNA secondary structure prediction in 3D

Hi all, I have a mRNA which forms a putative secondary structure. Is there any Webserver which takes the primary sequence of mRNA and can give me the predicted PDB file with the secondary structure formed? Regards and Thanks ##

[ccp4bb] MTZ to ccp4/MRC map

Hi all, I was wondering what would be the best way to convert a MTZ file to MRC or CCP4 map? I have a corresponding PDB file with me. Thanks To unsubscribe from the CCP4BB list, click the following link: https://www.jiscma