Re: [ccp4bb] binary compatibility with old Linux distributions (at synchrotrons?)

2025-03-27 Thread Yves Muller
Dear Kay, we haven't been updating our Ubuntu workstations beyond 18.04 since our stereo setup (Asus VG monitors with built-in emitters) would stop working. We basically now have to decide whether to continue using stereo or XDS (or we would have to use dedicated workstations for stereo or xd

Re: [ccp4bb] Issue with Ligand Builder in Coot

2025-03-27 Thread Paul Emsley
On 27/03/2025 18:14, Mohamed Gamal Hassan wrote: Dear CCP4 Community, I recently installed Coot version 0.9.8.92 (coot-0.9.8.92-binary-Linux-x86_64-scientific-linux-7.6-python-gtk2) on Ubuntu 22.04.4 LTS. However, I am experiencing an issue with the Ligand Builder feature. When I select

Re: [ccp4bb] binary compatibility with old Linux distributions (at synchrotrons?)

2025-03-27 Thread Kay Diederichs
Dear Yves, and all respondents on the list and privately, thank you for your answers! I've understood the message that we need to keep compiling XDS (and XDSGUI) on CentOS7 for a while. Maybe I'll ask again in one year from now. Best wishes, Kay P.S. Those of you running an operating system wi

Re: [ccp4bb] Unidentified Electron Density in Crystallization Data?

2025-03-27 Thread Jon Cooper
I will start with glucaric acid. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Sent from Proton Mail Android Original Message On 27/03/2025 19:36, Mintu Chandra wrote: > Hi everyone, > > I’m curious about the electron density shown in the attached screenshot. The > cr

Re: [ccp4bb] microfluidizer

2025-03-27 Thread Diogo V.M. Melo
I highly recommend you double check the buffer, some ingredients might be dissolved but crash out and clog during the procedure, no matter how viscous or not the sample ends up being. If one of the buffer ingredients behaves as such, you might delay using it or lower the concentration until after t

Re: [ccp4bb] Unidentified Electron Density in Crystallization Data?

2025-03-27 Thread Jon Cooper
Gluconic acid is a common fermentation product, so it is more likely to be gluconic acid rather than my previous suggestion. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Sent from Proton Mail Android Original Message On 27/03/2025 19:36, Mintu Chandra wrote: > Hi eve

[ccp4bb] In person registration closing soon for 11th CCP-EM Spring Symposium 23-25th April 2025

2025-03-27 Thread Lauren Giles - STFC UKRI
Dear all, In person registration for the 11th Annual CCP-EM Spring Symposium closes on the 1st April! The conference aims to provide a forum to highlight state-of-the-art developments in computational cryoEM and related themes, as well as showcasing outstanding recent biological applications.