Dear Bing Wang,
To solve your problem, you may try to take a eme ligand directly from a
PDB that contains it, e.g. 1HRC.
You should download the PDB file and to copy and paste the ligand
coordinates in a new file and then use this new pdb file to refine your
structure.
It could be a good s
1. what is the 3-letter code (residue type) of your heme? Ligand Explorer shows
maybe half a dozen ligands for heme. Most notable HEM (protoporphrin 9 with Fe),
HEC (same but with the double bonds in the vinyl substituents saturated) and
HEA (heme a). There is even an entry for the trypanosomal/Eu
On 12/09/14 23:28, Wang, Bing wrote:
Hi guys,
Hello.
A quick question about pdb deposition! My protein has a common ligand
'heme' which mismatches with the ligand in pdb CCD (/Chemical
Component Dictionary/).
What makes you think so?
However i didn't find any differences in it. Is that
