Re: [ccp4bb] high purity imidazole

2014-02-12 Thread Bernhard Rupp
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1308&L=ccp4bb&P=R255275&1=ccp4bb&9=A&J=on&d=No+Match%3BMatch%3BMatches&z=4 Includes updated table. BR -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Oganesyan, Vaheh Sent: Dienstag, 11. Februar 2

Re: [ccp4bb] off-topic Electron density map rendering..

2014-02-12 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Appalling if the program name is not mentioned in the manuscript. Best, Tim On 02/12/2014 03:08 AM, Francis Reyes wrote: > Anyone know the program used to render the electron density maps > for the fungal FAS in Figure 3c-3h from the paper "Mueller,

[ccp4bb] / or

2014-02-12 Thread Cai Qixu
Dear all, Does the I/sigmaI in “Table 1” mean for / or ? Thanks for your answer. Best wishes, Qixu Cai

Re: [ccp4bb] / or

2014-02-12 Thread Phil Evans
On 12 Feb 2014, at 11:43, Cai Qixu wrote: > Dear all, > > Does the I/sigmaI in “Table 1” mean for / or ? > > Thanks for your answer. > > Best wishes, > > Qixu Cai

Re: [ccp4bb] off-topic Electron density map rendering..

2014-02-12 Thread Boaz Shaanan
You're absolutely right Tim, but unfortunately that's very common these days not to mention the rendering program and ignore the efforts of those who developed it. Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel E-mail: bshaa...@bgu

Re: [ccp4bb] off-topic Electron density map rendering..

2014-02-12 Thread Jon Agirre
I believe that has been rendered in O, selecting a different line drawing mode you could get by hitting 'F3' a couple of times, IIRC. On 12 February 2014 12:05, Boaz Shaanan wrote: > You're absolutely right Tim, but unfortunately that's very common these days > not to mention the rendering progr

[ccp4bb] *conference reminder* 3rd annual CCP-BioSim conference - Frontiers of Biomolecular Simulation - University of Edinburgh - 21st-23rd May 2014

2014-02-12 Thread Martyn Winn
As advertised at the Study Weekend, CCPBioSim is the sister CCP in biomolecular simulation. The annual conference will take place in Edinburgh in May, see details below. Cheers Martyn Dear Colleagues, The third annual CCP-BioSim conference will be held at the John McIntyre conference centre,

Re: [ccp4bb] high purity imidazole

2014-02-12 Thread Oganesyan, Vaheh
Thanks to Debanu Das, Pedro J. B. Pereira and Bernhard Rupp for pointing me in the right direction. https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1308&L=ccp4bb&P=R255275&1=ccp4bb&9=A&J=on&d=No+Match%3BMatch%3BMatches&z=4 Regards, Vaheh Oganesyan www.medimmune.com To the extent th

Re: [ccp4bb] Sister CCPs

2014-02-12 Thread George Sheldrick
It would be so nice to have a 'sister CCP' for questions aboud wet-lab problems that have nothing to do with CCP4 or crystallographic computing, The is clearly a big need for it, and those of us who try to keep out of wet-labs would not have to wade though it all. George On 02/12/2014 03:05 P

[ccp4bb] Workshop - Biocrystallography for the high-throughput era -July 1-5, 2014, Bialystok, Poland

2014-02-12 Thread Krzysztof Brzezinski
Dear Colleagues, I would like to announce a workshop on "Biocrystallography for the high-throughput era". The workshop is addressed to students, postdocs and young researchers, who are engaged in structural studies of macromolecules. The aim is to familiarize the participants with modern methods o

Re: [ccp4bb] / or

2014-02-12 Thread Ronald E Stenkamp
How did people get when using HKL2000? Ron On Wed, 12 Feb 2014, Phil Evans wrote: On 12 Feb 2014, at 11:43, Cai Qixu wrote: Dear all, Does the I/sigmaI in “Table 1” mean for / or ? Thanks for your answer. Best wishes, Qixu Cai

Re: [ccp4bb] / or

2014-02-12 Thread Jacqueline Vitali
Phil Jeffrey has a small program to calculate avg. I/sig for Table 1 including for resolution ranges. Jackie Vitali On Wed, Feb 12, 2014 at 11:20 AM, Ronald E Stenkamp < stenk...@u.washington.edu> wrote: > How did people get when using HKL2000? Ron > > On Wed, 12 Feb 2014, Phil Evans wrote:

[ccp4bb] השב: Re: [ccp4bb] Sister CCPs

2014-02-12 Thread Boaz Shaanan
Dear George, I'm not sure it's a good idea since the wet work and coputational work are quite often linked. For example preparation of heavy atom derivatives and handling the data, to which bb would you send questions related to this subject? To both bb's? Wouldn't that make life even more comp

Re: [ccp4bb] / or

2014-02-12 Thread Edward A. Berry
phenix.merging_statistics gives it also. And I think a recent post by Z.O. indicated the current version of the HKL suite gives I/sig(I) and new statistics including CC1/2 or CC*. Jacqueline Vitali wrote: Phil Jeffrey has a small program to calculate avg. I/sig for Table 1 including for resolu

Re: [ccp4bb] השב: Re: [ccp4bb] Sister CCPs

2014-02-12 Thread Enrico Stura
George, Crystallization, cryoprotection are wet but important steps before data collection. Which topics would you like to exclude? Enrico. On Wed, 12 Feb 2014 17:32:47 +0100, Boaz Shaanan wrote: Dear George, I'm not sure it's a good idea since the wet work and coputational work are

Re: [ccp4bb] Sister CCPs

2014-02-12 Thread Frank von Delft
Don't know... I'm quite happy to wade through the wet stuff, keeps me in touch with the stuff that people actually struggle with. On 12/02/2014 15:59, George Sheldrick wrote: It would be so nice to have a 'sister CCP' for questions aboud wet-lab problems that have nothing to do with CCP4 or c

Re: [ccp4bb] Sister CCPs

2014-02-12 Thread Paul Emsley
On 12/02/14 15:59, George Sheldrick wrote: It would be so nice to have a 'sister CCP' for questions aboud wet-lab problems that have nothing to do with CCP4 or crystallographic computing, The is clearly a big need for it, and those of us who try to keep out of wet-labs would not have to wade th

[ccp4bb] Postdoc Position on Structural Biology of Membrane Proteins in Brazil

2014-02-12 Thread Andre Luis Berteli Ambrosio
Dear colleagues, I intend to implement work on structural biology (by X-ray crystallography) of membrane proteins in my lab, more specifically on the subset of inner mitochondrial membrane carriers. For this, I would like to take this opportunity and invite anybody who is prospecting a postdoc

Re: [ccp4bb] Sister CCPs

2014-02-12 Thread Kolar, Carol
>From the point of view of one of the wet lab personnel, picking the brains of >the experienced keeps us from reinventing the wheel at intervals. We really >appreciate the insight you can offer when we venture into unknown territories, >and we are grateful when you take the time to share. I do

Re: [ccp4bb] Sister CCPs

2014-02-12 Thread Robbie Joosten
It's not an e-mail bulletin board, but Researchgate seems to be quite popular for wet lab questions. IMO the Q&A section of the social network is a bit messy. That said, the quality seems to improve gradually. Cheers, Robbie Sent from my Windows Phone Van: Paul

[ccp4bb] השב: Re: [ccp4bb] Sister CCPs

2014-02-12 Thread Boaz Shaanan
The wet lab questions on ccp4bb are crystallography related in most if not all cases, aren't they? I'm  quite sure that people send more general wet lab questions to other bb's. Boaz הודעה מקורית מאת Robbie Joosten תאריך: 12/02/2014 21:22 (GMT+02:00) אל CCP4BB@JISCMAIL.AC

[ccp4bb] Postdoc position in chromosome cryo-ET at the National University of Singapore

2014-02-12 Thread Lu Gan
Dear Colleagues, A postdoctoral research fellow position is available in the Centre for BioImaging Sciences at the National University of Singapore, Singapore. The candidate will work with my team to study chromatin in eukaryotic cells using electron cryotomography (cryo-ET). The goal is to determ

[ccp4bb] Rmerge of Images

2014-02-12 Thread Keller, Jacob
Dear Crystallographers, Where can I find the definition of the R vs batch reported in scaling? Specifically I am wondering whether it is cumulative (each new frame versus all previous ones pooled together) or something else, and also how this metric can have any meaning on early frames when one

Re: [ccp4bb] Rmerge of Images

2014-02-12 Thread Ethan Merritt
On Thursday, 13 February 2014 04:46:51 AM Keller, Jacob wrote: > Dear Crystallographers, > > Where can I find the definition of the R vs batch reported in scaling? > Specifically I am wondering whether it is cumulative (each new frame versus > all previous ones pooled together) or something else