Re: [ccp4bb] Crystallography on BBC Radio 4 next week

2012-11-23 Thread Gohlke, Ulrich
Dear Peter, Thanks for the hint. Another possibility to listen to Radio 4 is for people that have an internet streamer (e.g. Squeezebox) to subscribe (free) to Orange Liveradio. This allows one to receive all BBC channels even outside the UK. Thanks to that, I wake up every morning with the Shi

[ccp4bb] about coot

2012-11-23 Thread Qixu Cai
Dear all, I have some problems about coot. 1, How to run the "Extensions --> All molecule --> Stepped refine" at "no-graphic" mode of coot? 2, Are all of the extensions in coot the scheme/python scripts? If yes, where the script files store at? 2, And is there any option to prevent coot auto-l

Re: [ccp4bb] about coot

2012-11-23 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Q. Cai, ad 1) maybe Paul knows better, but 'stepped refine' sounds to me like "coot refines step by step and displays the steps inbetween", which means that the combination with "no-graphic" mode makes little sense, doesn't it? You can run refmac5

Re: [ccp4bb] about coot

2012-11-23 Thread Paul Emsley
On 23/11/12 08:54, Qixu Cai wrote: I have some problems about coot. 1, How to run the "Extensions --> All molecule --> Stepped refine" at "no-graphic" mode of coot? (let ((imol (read-pdb "coot-download/3rso.pdb")) (imol-map (make-and-draw-map "coot-download/r3rso-refmac.mtz" "FWT" "PH

Re: [ccp4bb] about coot

2012-11-23 Thread Armando Albert
Dear Paul, >> 2, And is there any option to prevent coot auto-loading ~/.coot file? > > No. Why would you want to do that? You may want to open a different session in the same directory and not spoil the one you are using for refinement Armando I am out of the lab El 23/11/2012, a las 12:32

[ccp4bb] PhD studentship

2012-11-23 Thread Laura Spagnolo
Dear Colleagues, I would like to draw the attention of interested students to this opportunity to perform a PhD in my laboratory: http://www.findaphd.com/search/ProjectDetails.aspx?PJID=41839&LID=456 The deadline for applications is 18.01.2013. Best regards, Laura Dr Laura Spagnolo Institute

Re: [ccp4bb] Hgen ccp4i gui is broken

2012-11-23 Thread Petr Leiman
I have to follow up on my own thread because Hgen GUI does not start on my Mac (10.6.8) either. The same error message, which tells me that the tcl/tk code is broken. CCP4 is up-to-date. It would be great if at least one person tries pressing the Hgen button in ccp4i and gives a feedback to me

Re: [ccp4bb] CCP4 - Coot in Applications

2012-11-23 Thread Antony Oliver
Forgive what may be a very simple question… I have recently installed coot using the very nice CCP4 .dmg (0.7.0-i386) - which now puts coot into /Applications I now need to set a $PATH to coot, such that various home-made scripts now 'know' where it is Here I have hit a hurdle. Which binary f

Re: [ccp4bb] Hgen ccp4i gui is broken

2012-11-23 Thread Martin Montgomery
Hello, I get the same error message that you are seeing on either my mac (10.8.2 with a fink installed 64 bit ccp4 6.3.0) or our main linux server, again running the latest ccp4 with all the latest patches. Regards MGM Martin G Montgomery ATP Synthase Group MRC Mitochondrial Biology Unit Wel

Re: [ccp4bb] Hgen ccp4i gui is broken

2012-11-23 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi, the error message (which I also can reproduce) says, that the expression $task_setup typedef $arrayname does not evaluate to a number - it's a coding error, something that the HGen tcl-code passes incorrectly to the function RunTask. Shoul

[ccp4bb] Post-doc position in human ion channel structure/function studies at the SGC in Oxford

2012-11-23 Thread Liz Carpenter
We are seeking an enthusiastic and experienced membrane protein structural biologist with a strong interest in ion channel structure and function, to join the integral membrane proteins group at the Structural Genomics Consortium in Oxford. This post-doc position will involve purification, cryst

Re: [ccp4bb] Equilibrium Relative Humidity matching

2012-11-23 Thread Boaz Shaanan
    Boaz Shaanan, Ph.D. Dept. of Life Sciences  Ben-Gurion University of the Negev  Beer-Sheva 84105    Israel   

Re: [ccp4bb] Equilibrium Relative Humidity matching

2012-11-23 Thread Patrick Shaw Stewart
Matt, how well does it work in practice? Did you check the colligative predictions against the measurements that you originally made? I agree that the PEG has virtually no effect on the drop equilibration. This can be seen in comparisons of batch and v.d. e.g. http://www.douglas.co.uk/convert.htm